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Bug 457972 - sci-biology/rmblast bundles half of sci-biology/ncbi-tools++
Summary: sci-biology/rmblast bundles half of sci-biology/ncbi-tools++
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
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Keywords:
Depends on:
Blocks:
 
Reported: 2013-02-17 14:45 UTC by Justin Lecher
Modified: 2015-05-01 21:43 UTC (History)
1 user (show)

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Runtime testing required: ---


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Description Justin Lecher gentoo-dev 2013-02-17 14:45:25 UTC
This should be unbundled.
Comment 1 Martin Mokrejš 2015-05-01 21:43:42 UTC
No idea what tweaks people did for repeatmasker.

Hmm, I made yet another, sci-biology/ncbi-blast+ (in sci overlay).

On a general note, ncbi-blast+ is released from NCBI at higher pace than ncbi-tools++ so while at the very moment there is only blast+-2.2.28 available through ncbi-tools++ bundle there is for a long while blast+-2.2.30 through ncbi-blast+ (smaller subset, faster release procedure). So, it makes sense to provide both, even I would say to allow the smaller subset to overwrite binaries from the huge bundle (yeah, forcing static build but that's not a problem).

But the question what is different to the version from repeatmasker ... I don't know.

First the ebuilds for ncbi-tools++ and ncbi-blast+ should get polished (by you) ;-) , moved to main tree, then I would say one could think of rmblast variant.