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Bug 711246 - sci-biology/rmblast-1.2-r1 : ebuild uses colon (:) as a sed delimiter
Summary: sci-biology/rmblast-1.2-r1 : ebuild uses colon (:) as a sed delimiter
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks: colon-in-CFLAGS
  Show dependency tree
 
Reported: 2020-03-01 22:15 UTC by Toralf Förster
Modified: 2022-02-10 09:18 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.56 KB, text/plain)
2020-03-01 22:15 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,226.83 KB, text/plain)
2020-03-01 22:15 UTC, Toralf Förster
Details
environment (environment,87.82 KB, text/plain)
2020-03-01 22:15 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,18.33 KB, application/x-bzip)
2020-03-01 22:15 UTC, Toralf Förster
Details
sci-biology:rmblast-1.2-r1:20200301-211351.log (sci-biology:rmblast-1.2-r1:20200301-211351.log,1.90 KB, text/plain)
2020-03-01 22:15 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-03-01 22:15:07 UTC
>>> Unpacking rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz to /var/tmp/portage/sci-biology/rmblast-1.2-r1/work
>>> Unpacking rmblast-1.2-gcc47.patch.bz2 to /var/tmp/portage/sci-biology/rmblast-1.2-r1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/rmblast-1.2-r1/work
>>> Preparing source in /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++ ...
sed: -e expression #3, char 87: unknown option to `s'
 * ERROR: sci-biology/rmblast-1.2-r1::gentoo failed (prepare phase):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-20200226-021723

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.6
  [3]   python3.7 (fallback)
  [4]   python2.7 (fallback)
  [5]   pypy3 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.41.0 *
java-config:
The following VMs are available for generation-2:
*)	AdoptOpenJDK JRE 8.242_p08 [openjdk-jre-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-jre-bin-8  system-vm
ghc:
The Glorious Glasgow Haskell Compilation System, version 8.0.2

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Sun, 01 Mar 2020 20:37:27 +0000

emerge -qpvO sci-biology/rmblast
[ebuild  N    ] sci-biology/rmblast-1.2-r1
Comment 1 Toralf Förster gentoo-dev 2020-03-01 22:15:10 UTC
Created attachment 616742 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-03-01 22:15:13 UTC
Created attachment 616744 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-03-01 22:15:16 UTC
Created attachment 616746 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-03-01 22:15:18 UTC
Created attachment 616748 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-03-01 22:15:21 UTC
Created attachment 616750 [details]
sci-biology:rmblast-1.2-r1:20200301-211351.log
Comment 6 Larry the Git Cow gentoo-dev 2022-02-10 09:18:24 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d5c451e59a806404de4c3a9428a10c04a4f77dfc

commit d5c451e59a806404de4c3a9428a10c04a4f77dfc
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2022-02-10 09:16:27 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2022-02-10 09:17:33 +0000

    sci-biology/rmblast: treeclean
    
    Closes: https://bugs.gentoo.org/515962
    Closes: https://bugs.gentoo.org/579248
    Closes: https://bugs.gentoo.org/664518
    Closes: https://bugs.gentoo.org/711246
    Closes: https://bugs.gentoo.org/716172
    Closes: https://bugs.gentoo.org/457972
    Closes: https://bugs.gentoo.org/724466
    Closes: https://bugs.gentoo.org/828706
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/package.mask                     |  1 -
 sci-biology/rmblast/Manifest              |  2 --
 sci-biology/rmblast/metadata.xml          |  8 ------
 sci-biology/rmblast/rmblast-1.2-r1.ebuild | 47 -------------------------------
 4 files changed, 58 deletions(-)