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Bug 664518 - sci-biology/rmblast-1.2-r1 : /.../ncbistr.hpp:2826:61: error: cannot convert ncbi::AutoPtr<ncbi::IStringEncoder>::element_type*
Summary: sci-biology/rmblast-1.2-r1 : /.../ncbistr.hpp:2826:61: error: cannot convert ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2018-08-24 21:01 UTC by Toralf Förster
Modified: 2022-02-10 09:18 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.85 KB, text/plain)
2018-08-24 21:01 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,239.47 KB, text/plain)
2018-08-24 21:01 UTC, Toralf Förster
Details
environment (environment,86.13 KB, text/plain)
2018-08-24 21:01 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,17.57 KB, application/x-bzip)
2018-08-24 21:01 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,36.48 KB, application/x-bzip)
2018-08-24 21:01 UTC, Toralf Förster
Details
sci-biology:rmblast-1.2-r1:20180824-204532.log (sci-biology:rmblast-1.2-r1:20180824-204532.log,138.88 KB, text/plain)
2018-08-24 21:01 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2018-08-24 21:01:37 UTC
                 from /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/blob_storage.cpp:33:
/var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include/corelib/ncbistr.hpp: In member function ‘ncbi::IStringDecoder* ncbi::CStringPairs<TContainer>::GetEncoder()’:
/var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include/corelib/ncbistr.hpp:2826:61: error: cannot convert ‘ncbi::AutoPtr<ncbi::IStringEncoder>::element_type*’ {aka ‘ncbi::IStringEncoder*’} to ‘ncbi::IStringDecoder*’ in return
     IStringDecoder* GetEncoder(void) { return m_Encoder.get(); }
                                                             ^
/var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include/corelib/ncbistr.hpp: At global scope:

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-desktop-gnome-systemd_libressl_20180817-190408

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-8.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.6
  [3]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby23 (with Rubygems) *



emerge -qpv sci-biology/rmblast
[ebuild  N    ] sci-biology/rmblast-1.2-r1
Comment 1 Toralf Förster gentoo-dev 2018-08-24 21:01:40 UTC
Created attachment 544880 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2018-08-24 21:01:43 UTC
Created attachment 544882 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2018-08-24 21:01:46 UTC
Created attachment 544884 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2018-08-24 21:01:50 UTC
Created attachment 544886 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2018-08-24 21:01:52 UTC
Created attachment 544888 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2018-08-24 21:01:55 UTC
Created attachment 544890 [details]
sci-biology:rmblast-1.2-r1:20180824-204532.log
Comment 7 Larry the Git Cow gentoo-dev 2022-02-10 09:18:23 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d5c451e59a806404de4c3a9428a10c04a4f77dfc

commit d5c451e59a806404de4c3a9428a10c04a4f77dfc
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2022-02-10 09:16:27 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2022-02-10 09:17:33 +0000

    sci-biology/rmblast: treeclean
    
    Closes: https://bugs.gentoo.org/515962
    Closes: https://bugs.gentoo.org/579248
    Closes: https://bugs.gentoo.org/664518
    Closes: https://bugs.gentoo.org/711246
    Closes: https://bugs.gentoo.org/716172
    Closes: https://bugs.gentoo.org/457972
    Closes: https://bugs.gentoo.org/724466
    Closes: https://bugs.gentoo.org/828706
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/package.mask                     |  1 -
 sci-biology/rmblast/Manifest              |  2 --
 sci-biology/rmblast/metadata.xml          |  8 ------
 sci-biology/rmblast/rmblast-1.2-r1.ebuild | 47 -------------------------------
 4 files changed, 58 deletions(-)