Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 406279 - sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?
Summary: sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-02-29 11:16 UTC by Martin Mokrejš
Modified: 2015-08-27 13:50 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

Note You need to log in before you can comment on or make changes to this bug.
Description Martin Mokrejš 2012-02-29 11:16:03 UTC
checking for systemlib usage... checking for PLPLOT... no
configure: error: Package requirements (plplotd) were not met:

No package 'plplotd' found

Consider adjusting the PKG_CONFIG_PATH environment variable if you
installed software in a non-standard prefix.

Alternatively, you may set the environment variables PLPLOT_CFLAGS
and PLPLOT_LIBS to avoid the need to call pkg-config.
See the pkg-config man page for more details.

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-biology/emboss-6.3.1_p4-r1/work/EMBOSS-6.3.1/config.log
 * ERROR: sci-biology/emboss-6.3.1_p4-r1 failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *          ebuild.sh, line   85:  Called src_configure
 *        environment, line 2744:  Called emboss_src_configure
 *        environment, line 1291:  Called econf '--with-x' '--with-pngdriver' '--without-hpdf' '--without-mysql' '--without-postgresql' '--disable-static' '--enable-large' '--without-java' '--enable-systemlibs' '--docdir=/usr/share/doc/emboss-6.3.1_p4-r1' '--includedir=/usr/include/emboss'
 *   phase-helpers.sh, line  467:  Called die
 * The specific snippet of code:
 *                      die "econf failed"
 * 
 * If you need support, post the output of 'emerge --info =sci-biology/emboss-6.3.1_p4-r1',
 * the complete build log and the output of 'emerge -pqv =sci-biology/emboss-6.3.1_p4-r1'.
 * This ebuild used the following eclasses from overlays:
 *   /nfslarge/usr/portage/local/layman/science/eclass/emboss.eclass
 * This ebuild is from a repository named 'science'
 * The complete build log is located at '/var/tmp/portage/sci-biology/emboss-6.3.1_p4-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/emboss-6.3.1_p4-r1/temp/environment'.
 * S: '/var/tmp/portage/sci-biology/emboss-6.3.1_p4-r1/work/EMBOSS-6.3.1'
Comment 1 Jeroen Roovers gentoo-dev 2012-02-29 15:31:21 UTC
sci-biology/emboss-6.3.1_p4 does have that dependency. I don't see an -r1 here. Are you using an overlay?
Comment 2 Martin Mokrejš 2012-02-29 16:17:32 UTC
(In reply to comment #1)
> sci-biology/emboss-6.3.1_p4 does have that dependency. I don't see an -r1
> here. Are you using an overlay?

Sorry, yes, sci overlay. I see "inherit emboss" in the ebuild so maybe that could take care of the DEPS on plplot and others?
Comment 3 Justin Lecher gentoo-dev 2015-08-27 13:50:39 UTC
commit 08fae0a30263fd06fe51ac5b75301d574be9e1be
Author: Justin Lecher <jlec@gentoo.org>
Date:   Thu Aug 27 15:47:31 2015 +0200
    
    sci-biology/emboss: Drop old
    
    obsolets multiple bugs
    
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=542274
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=534418
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521604
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=514014
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=493724
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=406279
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=393311
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=382321
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=378443
    
    Package-Manager: portage-2.2.20.1
    Signed-off-by: Justin Lecher <jlec@gentoo.org>
    
    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=08fae0a30263fd06fe51ac5b75301d574be9e1be