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Bug 815166 - sci-libs/parmetis-4.0.3-r2 - /.../ld: /.../libmpich.a(initthread.o): relocation R_X86_64_TPOFF32 against symbol MPIR_Thread can no
Summary: sci-libs/parmetis-4.0.3-r2 - /.../ld: /.../libmpich.a(initthread.o): relocati...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-09-27 17:32 UTC by Toralf Förster
Modified: 2021-10-15 21:43 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.10 KB, text/plain)
2021-09-27 17:32 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,269.10 KB, text/plain)
2021-09-27 17:32 UTC, Toralf Förster
Details
environment (environment,91.66 KB, text/plain)
2021-09-27 17:32 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,46.77 KB, application/x-bzip)
2021-09-27 17:32 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,5.75 KB, application/x-bzip)
2021-09-27 17:32 UTC, Toralf Förster
Details
sci-libs:parmetis-4.0.3-r2:20210927-170525.log (sci-libs:parmetis-4.0.3-r2:20210927-170525.log,43.47 KB, text/plain)
2021-09-27 17:32 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,25.32 KB, application/x-bzip)
2021-09-27 17:32 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-09-27 17:32:15 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(initthread.o): relocation R_X86_64_TPOFF32 against symbol `MPIR_Thread' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(scatter.o): warning: relocation against `MPIR_ThreadInfo' in read-only section `.text'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(allreduce.o): relocation R_X86_64_PC32 against symbol `MPIR_ThreadInfo' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-j4-20210922-091635

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
clang version 12.0.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.1
Python 3.9.7
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-1.55.0 *
The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:

  HEAD of ::gentoo
commit 76142fd7759a239bdab3f6fa44c67084859cf6d7
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Mon Sep 27 16:51:30 2021 +0000

    2021-09-27 16:51:29 UTC

emerge -qpvO sci-libs/parmetis
[ebuild  N    ] sci-libs/parmetis-4.0.3-r2  USE="openmp pcre -doc -examples"
Comment 1 Toralf Förster gentoo-dev 2021-09-27 17:32:16 UTC
Created attachment 741714 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-09-27 17:32:18 UTC
Created attachment 741717 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-09-27 17:32:19 UTC
Created attachment 741720 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-09-27 17:32:21 UTC
Created attachment 741723 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-09-27 17:32:22 UTC
Created attachment 741726 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-09-27 17:32:23 UTC
Created attachment 741729 [details]
sci-libs:parmetis-4.0.3-r2:20210927-170525.log
Comment 7 Toralf Förster gentoo-dev 2021-09-27 17:32:24 UTC
Created attachment 741732 [details]
temp.tar.bz2
Comment 8 Larry the Git Cow gentoo-dev 2021-10-15 21:43:32 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=19b02b8468d4c21a109ff76ed84b0f933b797560

commit 19b02b8468d4c21a109ff76ed84b0f933b797560
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2021-10-15 21:41:14 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-10-15 21:43:17 +0000

    sys-cluster/mpich: restore missing configure option
    
    Bug: https://bugs.gentoo.org/815427
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=815424
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=815166
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814776
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814587
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814584
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814581
    Closes: https://bugs.gentoo.org/show_bug.cgi?id=814548
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-cluster/mpich/{mpich-3.0.4.ebuild => mpich-3.0.4-r1.ebuild} | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)