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Bug 814776 - sci-libs/hypre-2.21.0 - /.../ld: /.../libmpich.a(initthread.o): relocation R_X86_64_TPOFF32 against symbol MPIR_Thread can not be
Summary: sci-libs/hypre-2.21.0 - /.../ld: /.../libmpich.a(initthread.o): relocation R_...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-09-25 08:41 UTC by Toralf Förster
Modified: 2021-10-17 08:34 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.78 KB, text/plain)
2021-09-25 08:41 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,90.57 KB, text/plain)
2021-09-25 08:41 UTC, Toralf Förster
Details
environment (environment,75.00 KB, text/plain)
2021-09-25 08:41 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,22.57 KB, application/x-bzip)
2021-09-25 08:41 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,7.69 KB, application/x-bzip)
2021-09-25 08:41 UTC, Toralf Förster
Details
sci-libs:hypre-2.21.0:20210925-060041.log (sci-libs:hypre-2.21.0:20210925-060041.log,26.51 KB, text/plain)
2021-09-25 08:41 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,20.99 KB, application/x-bzip)
2021-09-25 08:41 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-09-25 08:41:10 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(initthread.o): relocation R_X86_64_TPOFF32 against symbol `MPIR_Thread' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(attrutil.o): warning: relocation against `MPIR_ThreadInfo' in read-only section `.text'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(allreduce.o): relocation R_X86_64_PC32 against symbol `MPIR_ThreadInfo' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib_systemd-j4-20210924-151653

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
clang version 12.0.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.1
Python 3.9.7
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.55.0 *
The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:

  HEAD of ::gentoo
commit bb274b080f7802b79f58ed9aeffd6bf9832bcdf0
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Sep 24 22:21:31 2021 +0000

    2021-09-24 22:21:30 UTC

emerge -qpvO sci-libs/hypre
[ebuild   R   ] sci-libs/hypre-2.21.0  USE="fortran mpi openmp -debug -examples -int64"
Comment 1 Toralf Förster gentoo-dev 2021-09-25 08:41:11 UTC
Created attachment 741192 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-09-25 08:41:13 UTC
Created attachment 741195 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-09-25 08:41:15 UTC
Created attachment 741198 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-09-25 08:41:16 UTC
Created attachment 741201 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-09-25 08:41:17 UTC
Created attachment 741204 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-09-25 08:41:18 UTC
Created attachment 741207 [details]
sci-libs:hypre-2.21.0:20210925-060041.log
Comment 7 Toralf Förster gentoo-dev 2021-09-25 08:41:19 UTC
Created attachment 741210 [details]
temp.tar.bz2
Comment 8 Larry the Git Cow gentoo-dev 2021-10-15 21:43:32 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=19b02b8468d4c21a109ff76ed84b0f933b797560

commit 19b02b8468d4c21a109ff76ed84b0f933b797560
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2021-10-15 21:41:14 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-10-15 21:43:17 +0000

    sys-cluster/mpich: restore missing configure option
    
    Bug: https://bugs.gentoo.org/815427
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=815424
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=815166
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814776
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814587
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814584
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814581
    Closes: https://bugs.gentoo.org/show_bug.cgi?id=814548
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-cluster/mpich/{mpich-3.0.4.ebuild => mpich-3.0.4-r1.ebuild} | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
Comment 9 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-10-17 08:32:18 UTC
Should be resolved by the mpich fix.