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Bug 815427 - dev-python/mpi4py-3.0.3 - /.../ld: .../libmpich.a(initthread.o): relocation R_X86_64_TPOFF32 against symbol MPIR_Thread can not be
Summary: dev-python/mpi4py-3.0.3 - /.../ld: .../libmpich.a(initthread.o): relocation R...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: No maintainer - Look at https://wiki.gentoo.org/wiki/Project:Proxy_Maintainers if you want to take care of it
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-09-30 09:04 UTC by Toralf Förster
Modified: 2021-10-17 08:34 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.42 KB, text/plain)
2021-09-30 09:04 UTC, Toralf Förster
Details
dev-python:mpi4py-3.0.3:20210930-084611.log (dev-python:mpi4py-3.0.3:20210930-084611.log,30.24 KB, text/plain)
2021-09-30 09:04 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,351.23 KB, text/plain)
2021-09-30 09:04 UTC, Toralf Förster
Details
environment (environment,115.06 KB, text/plain)
2021-09-30 09:04 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,38.91 KB, application/x-bzip)
2021-09-30 09:04 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,28.50 KB, application/x-bzip)
2021-09-30 09:04 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-09-30 09:04:32 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(initthread.o): relocation R_X86_64_TPOFF32 against symbol `MPIR_Thread' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(type_hvector.o): warning: relocation against `MPIR_ThreadInfo' in read-only section `.text'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpich.a(comm_free_keyval.o): relocation R_X86_64_PC32 against symbol `MPIR_ThreadInfo' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-j4-20210926-150526

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
/usr/lib/llvm/12
12.0.1
Python 3.9.7
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:
  [1]   php7.3
  [2]   php7.4
  [3]   php8.0 *

  HEAD of ::gentoo
commit 7111db3bc6b9b3ef0fae58021ac1604b668de670
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Sep 30 07:27:53 2021 +0000

    2021-09-30 07:27:40 UTC

emerge -qpvO dev-python/mpi4py
[ebuild   R   ] dev-python/mpi4py-3.0.3  USE="-doc -examples -test" PYTHON_TARGETS="python3_9 -python3_8"
Comment 1 Toralf Förster gentoo-dev 2021-09-30 09:04:33 UTC
Created attachment 742149 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-09-30 09:04:34 UTC
Created attachment 742152 [details]
dev-python:mpi4py-3.0.3:20210930-084611.log
Comment 3 Toralf Förster gentoo-dev 2021-09-30 09:04:36 UTC
Created attachment 742155 [details]
emerge-history.txt
Comment 4 Toralf Förster gentoo-dev 2021-09-30 09:04:38 UTC
Created attachment 742158 [details]
environment
Comment 5 Toralf Förster gentoo-dev 2021-09-30 09:04:39 UTC
Created attachment 742161 [details]
etc.portage.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-09-30 09:04:40 UTC
Created attachment 742164 [details]
temp.tar.bz2
Comment 7 Larry the Git Cow gentoo-dev 2021-10-15 21:43:38 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=19b02b8468d4c21a109ff76ed84b0f933b797560

commit 19b02b8468d4c21a109ff76ed84b0f933b797560
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2021-10-15 21:41:14 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-10-15 21:43:17 +0000

    sys-cluster/mpich: restore missing configure option
    
    Bug: https://bugs.gentoo.org/815427
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=815424
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=815166
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814776
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814587
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814584
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=814581
    Closes: https://bugs.gentoo.org/show_bug.cgi?id=814548
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-cluster/mpich/{mpich-3.0.4.ebuild => mpich-3.0.4-r1.ebuild} | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
Comment 8 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-10-17 08:32:18 UTC
Should be resolved by the mpich fix.