266 | fprintf(stderr, "a_hang "F_S64" b_hang "F_S64" flipped "F_U64"\n", olap.dat.ovl.a_hang, olap.dat.ovl.b_hang, olap.dat.ovl.flipped); | ^ AS_BAT_OverlapCache.C:28:10: fatal error: sys/sysctl.h: No such file or directory 28 | #include <sys/sysctl.h> | ^~~~~~~~~~~~~~ compilation terminated. ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_systemd-libressl_abi32+64-20200821-231953 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-7.3.1 [2] x86_64-pc-linux-gnu-10.2.0 * clang version 10.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/10/bin /usr/lib/llvm/10 10.0.1 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.9 (fallback) [3] python3.8 (fallback) [4] python3.6 (fallback) [5] python2.7 (fallback) [6] pypy3 (fallback) Available Ruby profiles: [1] ruby25 (with Rubygems) * Available Rust versions: [1] rust-bin-1.46.0 * The following VMs are available for generation-2: *) AdoptOpenJDK JRE 8.265_p01 [openjdk-jre-bin-8] Available Java Virtual Machines: [1] openjdk-jre-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.8.4 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Sat Aug 29 01:05:34 AM UTC 2020 /var/db/repos/libressl Mon Aug 10 09:13:35 AM UTC 2020 emerge -qpvO sci-biology/wgs-assembler [ebuild N ] sci-biology/wgs-assembler-7.0-r2
Created attachment 657354 [details] emerge-info.txt
Created attachment 657356 [details] emerge-history.txt
Created attachment 657358 [details] environment
Created attachment 657360 [details] etc.portage.tbz2
Created attachment 657362 [details] sci-biology:wgs-assembler-7.0-r2:20200829-015024.log.bz2
Created attachment 657364 [details] temp.tbz2
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3bb969235bd365889ce11029fabbf20b50baed7c commit 3bb969235bd365889ce11029fabbf20b50baed7c Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-08-05 08:33:24 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-08-05 08:33:24 +0000 profiles: last-rite sci-biology/wgs-assembler Bug: https://bugs.gentoo.org/610094 Bug: https://bugs.gentoo.org/715874 Bug: https://bugs.gentoo.org/731860 Bug: https://bugs.gentoo.org/739486 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 7 +++++++ 1 file changed, 7 insertions(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=646bf3998bdd7dce3da0f3ad2bd03e201361a391 commit 646bf3998bdd7dce3da0f3ad2bd03e201361a391 Author: Jakov Smolić <jsmolic@gentoo.org> AuthorDate: 2021-09-04 06:56:40 +0000 Commit: Jakov Smolić <jsmolic@gentoo.org> CommitDate: 2021-09-04 07:01:52 +0000 sci-biology/wgs-assembler: Remove last-rited package Closes: https://bugs.gentoo.org/610094 Closes: https://bugs.gentoo.org/715874 Closes: https://bugs.gentoo.org/731860 Closes: https://bugs.gentoo.org/739486 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> profiles/package.mask | 7 - sci-biology/wgs-assembler/Manifest | 1 - .../files/wgs-assembler-7.0-build.patch | 257 --------------------- .../files/wgs-assembler-7.0-libtirpc.patch | 16 -- sci-biology/wgs-assembler/metadata.xml | 11 - .../wgs-assembler/wgs-assembler-7.0-r2.ebuild | 66 ------ 6 files changed, 358 deletions(-)
