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Bug 731860 - sci-biology/wgs-assembler fails to compile
Summary: sci-biology/wgs-assembler fails to compile
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2020-07-09 11:50 UTC by Agostino Sarubbo
Modified: 2021-09-04 07:02 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,370.11 KB, text/plain)
2020-07-09 11:50 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2020-07-09 11:50:51 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/wgs-assembler fails to compile.
Discovered on: amd64  (internal ref: tinderbox)

NOTE:
This machine uses a clang/LLVM toolchain.
If you think that this issue is strictly related to clang/LLVM please block bug 408963. If you think that this issue isstrictly related to the LLD linker, please block bug 731004.
Comment 1 Agostino Sarubbo gentoo-dev 2020-07-09 11:50:56 UTC
Created attachment 648492 [details]
build.log

build log and emerge --info
Comment 2 Larry the Git Cow gentoo-dev 2021-08-05 08:33:40 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3bb969235bd365889ce11029fabbf20b50baed7c

commit 3bb969235bd365889ce11029fabbf20b50baed7c
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-08-05 08:33:24 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-08-05 08:33:24 +0000

    profiles: last-rite sci-biology/wgs-assembler
    
    Bug: https://bugs.gentoo.org/610094
    Bug: https://bugs.gentoo.org/715874
    Bug: https://bugs.gentoo.org/731860
    Bug: https://bugs.gentoo.org/739486
    Signed-off-by: David Seifert <soap@gentoo.org>

 profiles/package.mask | 7 +++++++
 1 file changed, 7 insertions(+)
Comment 3 Larry the Git Cow gentoo-dev 2021-09-04 07:02:11 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=646bf3998bdd7dce3da0f3ad2bd03e201361a391

commit 646bf3998bdd7dce3da0f3ad2bd03e201361a391
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2021-09-04 06:56:40 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2021-09-04 07:01:52 +0000

    sci-biology/wgs-assembler: Remove last-rited package
    
    Closes: https://bugs.gentoo.org/610094
    Closes: https://bugs.gentoo.org/715874
    Closes: https://bugs.gentoo.org/731860
    Closes: https://bugs.gentoo.org/739486
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/package.mask                              |   7 -
 sci-biology/wgs-assembler/Manifest                 |   1 -
 .../files/wgs-assembler-7.0-build.patch            | 257 ---------------------
 .../files/wgs-assembler-7.0-libtirpc.patch         |  16 --
 sci-biology/wgs-assembler/metadata.xml             |  11 -
 .../wgs-assembler/wgs-assembler-7.0-r2.ebuild      |  66 ------
 6 files changed, 358 deletions(-)