Yesterday I emerged avogadro2 with no issues. Today, after adding USE="vtk" to avogadrolibs in package.use, avogadrolibs fails to build this way: ===== >>> Emerging (5 of 7) sci-libs/avogadrolibs-1.93.0::gentoo * avogadrolibs-1.93.0.tar.gz BLAKE2B SHA512 size ;-) ... [ ok ] * linux64-genXrdPattern BLAKE2B SHA512 size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking avogadrolibs-1.93.0.tar.gz to /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work >>> Unpacking linux64-genXrdPattern to /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work unpack linux64-genXrdPattern: file format not recognized. Ignoring. >>> Source unpacked in /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work >>> Preparing source in /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 ... * Applying avogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build" cmake -C /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_DOCDIR=/usr/share/doc/avogadrolibs-1.93.0 -DUSE_PROTOCALL=OFF -DBUILD_GPL_PLUGINS=ON -DUSE_MOLEQUEUE=ON -DUSE_MMTF=OFF -DUSE_LIBMSYM=OFF -DUSE_SPGLIB=OFF -DUSE_PYTHON=OFF -DUSE_LIBARCHIVE=no -DBUILD_DOCUMENTATION=no -DUSE_HDF5=no -DENABLE_TRANSLATIONS=yes -DUSE_OPENGL=yes -DUSE_QT=yes -DBUILD_STATIC_PLUGINS=ON -DENABLE_TESTING=no -DUSE_VTK=yes -DBUNDLED_GENXRDPATTERN=/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/genXrdPattern -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 loading initial cache file /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/gentoo_common_config.cmake -- The C compiler identification is GNU 9.2.0 -- The CXX compiler identification is GNU 9.2.0 -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Found Git: /usr/bin/git (found version "2.24.1") -- Could not use git to determine source version, using version 1.93.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenGL.cmake:275 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib64/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib64/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib64/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/rendering/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include -- Found PythonInterp: /usr/bin/python (found suitable version "3.6.10", minimum required is "2") CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenGL.cmake:275 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib64/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib64/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib64/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/vtk/CMakeLists.txt:5 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Downloading genXrdPattern executable from https://github.com/psavery/genXrdPattern/releases/download/1.0-static/linux64-genXrdPattern CMake Error at cmake/DownloadGenXrdPattern.cmake:40 (file): file DOWNLOAD HASH mismatch for file: [/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/qtplugins/plotxrd/tmp/genXrdPattern] expected hash: [e1b3c1d6b951ed83a037567490d75f1d] actual hash: [d41d8cd98f00b204e9800998ecf8427e] status: [6;"Couldn't resolve host name"] Call Stack (most recent call first): avogadro/qtplugins/plotxrd/CMakeLists.txt:4 (DownloadGenXrdPattern) Avogadro Generators not found at /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0/../avogadrogenerators! CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenGL.cmake:275 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib64/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib64/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib64/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): avogadro/qtplugins/overlayaxes/CMakeLists.txt:3 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C -march=native -O2 -pipe C++ -march=native -O2 -pipe Linker flags: Executable -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed Module -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed Shared -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed -- Configuring incomplete, errors occurred! ===== vtk has just been installed: $ eix -I vtk [I] sci-libs/vtk Available versions: (~)8.1.0-r4^t {R +X all-modules aqua boost doc examples ffmpeg gdal imaging java json mpi mysql odbc offscreen postgres python qt5 rendering tbb tcl test theora tk views web xdmf2 ELIBC="FreeBSD" PYTHON_SINGLE_TARGET="+python3_6" VIDEO_CARDS="nvidia"} Installed versions: 8.1.0-r4^t(13:25:33 17/03/20)(X ffmpeg java json qt5 rendering tcl theora tk views -R -all-modules -aqua -boost -doc -examples -gdal -imaging -mpi -mysql -odbc -offscreen -postgres -python -tbb -test -web -xdmf2 ELIBC="-FreeBSD" PYTHON_SINGLE_TARGET="python3_6" VIDEO_CARDS="-nvidia") Homepage: https://www.vtk.org/ Description: The Visualization Toolkit And this is how emerge wants to update avogadrolibs: [ebuild R ~] sci-libs/avogadrolibs-1.93.0::gentoo USE="qt5 vtk* -archive -doc -hdf5 -test" 7.305 KiB
Thank you for the report. Please recompile and *attach* the logfiles and paste the emerge info as described on https://wiki.gentoo.org/wiki/Attach_the_logs_to_the_bug_ticket We need to have all information at hand before ticket assignment, so that the maintainer can look after it in one session with minimal number of callbacks. Please reopen this ticket (Status:unconfirmed) afterwards.
Created attachment 621604 [details] build.log Here you are the build.log for avogadrolibs with USE="vtk"
Created attachment 621606 [details] ebuild environment Here you are the ebuild environment.
$ emerge --info '=sci-libs/avogadrolibs-1.93.0::gentoo' Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-9.2.0, glibc-2.29-r7, 4.19.97-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.19.97-gentoo-x86_64-AMD_Ryzen_7_2700X_Eight-Core_Processor-with-gentoo-2.6 KiB Mem: 32941060 total, 8608912 free KiB Swap: 39845884 total, 39845884 free Timestamp of repository gentoo: Tue, 17 Mar 2020 12:30:01 +0000 Head commit of repository gentoo: d9b51dbc1be613cff39149ebdaf22893d4046ff3 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.33.1 p2) 2.33.1 app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.17-r1::gentoo, 3.6.10::gentoo, 3.7.6::gentoo dev-util/cmake: 3.14.6::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.33.1-r1::gentoo sys-devel/gcc: 9.2.0-r2::gentoo sys-devel/gcc-config: 2.2.1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.19::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: local location: /usr/portage/local masters: gentoo priority: 0 4nykey location: /var/lib/layman/4nykey sync-type: laymansync sync-uri: https://github.com/4nykey/4nykey.git masters: gentoo priority: 50 flatpak-overlay location: /var/lib/layman/flatpak-overlay sync-type: laymansync sync-uri: https://github.com/fosero/flatpak-overlay.git masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O3 -march=znver1" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O3 -march=znver1" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--with-bdeps y" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" INSTALL_MASK="/usr/share/locale -/usr/share/locale/es -/usr/share/locale/es_ES -/usr/share/locale/en_US -/usr/share/locale/en /usr/share/gcc-data/x86_64-pc-linux-gnu/*/locale -/usr/share/gcc-data/x86_64-pc-linux-gnu/*/locale/es /usr/share/man/de /usr/share/man/el /usr/share/man/fr /usr/share/man/hu /usr/share/man/ja /usr/share/man/jp /usr/share/man/sk /usr/share/man/zh_TW" LANG="es_ES.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="es_ES es en_US en" MAKEOPTS="-j5" PKGDIR="/home/ramiro/usr/local/portage/pkgdir-backup/" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac aalib accessibility acl acpi activities additions adns ads alsa amd64 apbs apm apng archive arpack attica audiofile auth authfile autoipd autoreplace autotrace bash-completion bcmath bdf berkdb binary-drivers blas branding bzip2 cairo caps cdda cddb cdparanoia cdr cdrom cg chm chroot clamav cli compat contactnotes context crypt css ctype cups curl curlwrappers custom-optimization cxx dbus declarative designer-plugin desktopglobe detex dga dia directfb djvu dri dts dvd dvdr dvi dvipdfm emboss emf emovix enca encode exif expoblending extensions extra fastcgi fat fbcon ffmpeg fftw flac flatfile flickr fltk fontconfig foomaticdb fortran fpx ftp fuse gallium gd gdbm geoip geolocation gif gimp git glew gmp gphoto2 gpm gps gpssync grammar graphics graphviz grub gsl gstreamer gtk gzip hddtemp hdri history hpcups hpijs humanities icedtea7 iconv icu id3tag idn ieee1394 imagemagick imap imlib inifile inkjar ipv6 jack jadetex java java6 javafx javascript jbig jce jfs jpeg jpeg2k json justify kde kipi kwallet ladspa lame lapack latex lcms ldap lensfun libcaca libnotify libsecret libssh2 libtirpc libwww live llvm-shared-libs lm-sensors lm_sensors logrotate lqr lua lzo m17n-lib mad maildir math matroska mbox md5sum mdb mediawiki memlimit metis milter mime mjpeg mmap mmxext mng mobi modplug mono motif mozilla mp3 mp4 mpeg mplayer msms msn mtp multilib multiuser musepack music musicbrainz nas ncurses neXt net netboot network network-cron networking networkmanager new-login nis nls npp nptl nsplugin ntfs ntfsprogs numpy ofx ogg omega openal openbabel openexr opengl openmax openmp opensslcrypt openvg osc ots pam pango panorama parse-clocks pcntl pcre pdf phonon plasma plotutils plugins png policykit portaudio posix postproc postscript povray ppds profile pstricks publishers qalculate qml qt5 quicktime qwt rar raw rdesktop readline redeyes reiserfs resolvconf rss rtc rtf rtsp ruby samba sasl scanner science sdk sdl sdl-image seccomp semantic-desktop sensord shout simplexml skey skins slang slp smp snmp soap sockets socks5 solver source sox speex spell split-usr sse3 sse4 sse41 sse4_1 ssl ssse3 startup-notification subtitles subversion svg swat sync-plugin-portage syslog systemd sysvipc szip t1lib taglib tbb tcl tcpd tex4ht tga theora thesaurus threads thumbnail thunderbird tidy tiff tk truetype twolame udev udisks unicode upower usb userlocales v4l vaapi vcd vcdx vdpau vlm vmd vnc vorbis wavpack wayland wayland-compositor wddx webdav webstart widgets winbind winpopup wmf wxwidgets x264 xanim xattr xcb xcomposite xetex xface xforms xfs xft xindy xine xls xml xmlreader xmlrpc xmlwriter xmp xorgmodule xplanet xpm xsl xv xvid zip zlib zoran" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 sse4_1 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="es-ES es en-US en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" SANE_BACKENDS="epson2 hp samsung" USERLAND="GNU" VIDEO_CARDS="radeonsi amdgpu" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sci-libs/avogadrolibs-1.93.0::gentoo was built with the following: USE="archive qt5 -doc -hdf5 -test -vtk" ABI_X86="(64)" FEATURES="userfetch config-protect-if-modified network-sandbox binpkg-logs unmerge-orphans multilib-strict xattr merge-sync usersandbox strict fixlafiles distlocks unmerge-logs sfperms ipc-sandbox unknown-features-warn ebuild-locks news preserve-libs protect-owned userpriv usersync pid-sandbox binpkg-dostrip assume-digests binpkg-docompress parallel-fetch sandbox qa-unresolved-soname-deps"
$ emerge -pqv '=sci-libs/avogadrolibs-1.93.0::gentoo' [ebuild R ] sci-libs/avogadrolibs-1.93.0 USE="archive qt5 vtk* -doc -hdf5 -test"
It tries to download a binary program and fails. We need to package this https://github.com/psavery/genXrdPattern/ and this https://fox.vincefn.net/Compile/Linux
Any update on this? AFAIUI we need to build vtk with -DVTK_MODULE_ENABLE_VTK_RenderingContextOpenGL2=YES for avogadrolibs..
-- Found OpenMP: TRUE (found version "4.5") CMake Error at avogadro/vtk/CMakeLists.txt:14 (find_package): Found package configuration file: /usr/lib64/cmake/vtk-9.0/vtk-config.cmake but it set VTK_FOUND to FALSE so package "VTK" is considered to be NOT FOUND. Reason given by package: Could not find the VTK package with the following required components: RenderingContextOpenGL2.
Version 1.97.0 compiles just fine with USE="vtk" for me, can you confirm the problem is fixed on your end as well?
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9e97c03aece8465ab60bf30fc1807267e2238d21 commit 9e97c03aece8465ab60bf30fc1807267e2238d21 Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org> AuthorDate: 2022-09-07 09:33:34 +0000 Commit: Andrew Ammerlaan <andrewammerlaan@gentoo.org> CommitDate: 2022-09-07 09:54:52 +0000 sci-libs/avogadrolibs: add 1.97.0 Bug: https://bugs.gentoo.org/832528 Bug: https://bugs.gentoo.org/712962 Bug: https://bugs.gentoo.org/868132 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> sci-libs/avogadrolibs/Manifest | 2 + sci-libs/avogadrolibs/avogadrolibs-1.97.0.ebuild | 93 ++++++++++++++++++++++++ 2 files changed, 95 insertions(+)
(In reply to Andrew Ammerlaan from comment #9) > Version 1.97.0 compiles just fine with USE="vtk" for me, can you confirm the > problem is fixed on your end as well? Thanks, but to the best of my knowledge only avogadrolibs-1.95.1 is available (https://gpo.zugaina.org/sci-libs/avogadrolibs). When emerging v1.95.1, it fails at step [191/578]: ===== [191/578] /usr/bin/x86_64-pc-linux-gnu-g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1 -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/core -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/io -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/quantumio -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/rendering -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/qtgui -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/qtopengl -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/molequeue -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/vtk -I/var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1_build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -march=znver2 -O2 -pipe -Wnon-virtual-dtor -Wno-long-long -Wcast-align -Wchar-subscripts -Wall -Wpointer-arith -Wformat-security -Woverloaded-virtual -fno-check-new -fno-common -pedantic -Wshadow -Wextra -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp In file included from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.h:9, from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp:6: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtgui/sceneplugin.h:59:16: warning: ‘virtual void Avogadro::QtGui::ScenePlugin::process(const Avogadro::Core::Molecule&, Avogadro::Rendering::GroupNode&)’ was hidden [-Woverloaded-virtual] 59 | virtual void process(const Core::Molecule& molecule, | ^~~~~~~ In file included from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp:6: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.h:27:8: note: by ‘virtual void Avogadro::QtPlugins::Cartoons::process(const Avogadro::QtGui::Molecule&, Avogadro::Rendering::GroupNode&)’ 27 | void process(const QtGui::Molecule& molecule, | ^~~~~~~ In file included from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/scene.h:22, from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/bufferobject.h:23, from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:9, from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/beziergeometry.h:9, from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp:15: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()’: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h:51:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 51 | Node* node; | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h:50:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 50 | NodeType ui; | ^~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h:48:5: warning: when initialized here [-Wreorder] 48 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h: In constructor ‘Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)’: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h:51:11: warning: ‘Avogadro::Rendering::GroupNode::NodeInfo::node’ will be initialized after [-Wreorder] 51 | Node* node; | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h:50:14: warning: ‘Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui’ [-Wreorder] 50 | NodeType ui; | ^~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/groupnode.h:49:5: warning: when initialized here [-Wreorder] 49 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/beziergeometry.h:9, from /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp:15: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line()’: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:56:8: warning: ‘bool Avogadro::Rendering::Line::flat’ [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:56:8: warning: ‘Avogadro::Rendering::Line::flat’ will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h: In constructor ‘Avogadro::Rendering::Line::Line(float)’: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:57:9: warning: ‘Avogadro::Rendering::Line::radius’ will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:55:8: warning: ‘bool Avogadro::Rendering::Line::dirty’ [-Wreorder] 55 | bool dirty; | ^~~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp: In member function ‘void Avogadro::QtPlugins::LayerCartoon::setupWidget(Avogadro::QtPlugins::Cartoons*)’: /var/tmp/portage/sci-libs/avogadrolibs-1.95.1/work/avogadrolibs-1.95.1/avogadro/qtplugins/cartoons/cartoons.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 114 | for (size_t i = 0; i < boxesText.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ ninja: build stopped: subcommand failed. * ERROR: sci-libs/avogadrolibs-1.95.1::gentoo failed (compile phase): * ninja -v -j16 -l0 failed * * Call stack: * ebuild.sh, line 127: Called src_compile * environment, line 2166: Called cmake_src_compile * environment, line 944: Called cmake_build * environment, line 913: Called eninja * environment, line 1364: Called die * The specific snippet of code: * "$@" || die "${nonfatal_args[@]}" "${*} failed"
> Thanks, but to the best of my knowledge only avogadrolibs-1.95.1 is available (https://gpo.zugaina.org/sci-libs/avogadrolibs). I pushed it yesterday, you'll have to `emerge --sync` to get it. gpo.zugaina.org is usually a bit behind, packages.gentoo.org is a bit faster: https://packages.gentoo.org/packages/sci-libs/avogadrolibs
