I'm currently testing builds against vtk-9.1. The package fails with FAILED: avogadro/vtk/CMakeFiles/AvogadroVtk.dir/AvogadroVtk_autogen/mocs_compilation.cpp.o /usr/bin/x86_64-pc-linux-gnu-g++ -DAvogadroVtk_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_L IB -I/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/vtk/AvogadroVtk_aut ogen/include -I/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build -I/var/tmp/portage /sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 -I/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/av ogadrolibs-1.93.0_build/avogadro/core -I/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 _build/avogadro/io -I/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/qua ntumio -I/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/rendering -I/va r/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/qtgui -I/var/tmp/portage/sc i-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/qtopengl -I/var/tmp/portage/sci-libs/avogad rolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/molequeue -I/var/tmp/portage/sci-libs/avogadrolibs-1.93. 0/work/avogadrolibs-1.93.0_build/avogadro/vtk -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib6 4/qt5/mkspecs/linux-g++ -DH5_USE_110_API -DNDEBUG -O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-prote ctor-strong -fstack-check -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avoga dro/vtk/CMakeFiles/AvogadroVtk.dir/AvogadroVtk_autogen/mocs_compilation.cpp.o -MF avogadro/vtk/CMakeFiles/Avog adroVtk.dir/AvogadroVtk_autogen/mocs_compilation.cpp.o.d -o avogadro/vtk/CMakeFiles/AvogadroVtk.dir/AvogadroVt k_autogen/mocs_compilation.cpp.o -c /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_bui ld/avogadro/vtk/AvogadroVtk_autogen/mocs_compilation.cpp In file included from /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/vt k/AvogadroVtk_autogen/EWIEGA46WW/moc_vtkglwidget.cpp:10, from /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/vt k/AvogadroVtk_autogen/mocs_compilation.cpp:2: /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/vtk/AvogadroVtk_autogen/ EWIEGA46WW/../../../../../avogadrolibs-1.93.0/avogadro/vtk/vtkglwidget.h:22:10: fatal error: QVTKOpenGLWidget. h: No such file or directory 22 | #include <QVTKOpenGLWidget.h> | ^~~~~~~~~~~~~~~~~~~~ compilation terminated. Reproducible: Always This build is from a chroot test environment. Portage 3.0.30 (python 3.9.10-final-0, default/linux/amd64/17.1/systemd, gcc-11.2.1, glibc-2.34-r7, 5.15.17-gentoo-0 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.15.17-gentoo-0-x86_64-AMD_Ryzen_7_3800X_8-Core_Processor-with-glibc2.34 KiB Mem: 32824732 total, 7151480 free KiB Swap: 33554428 total, 31137596 free Head commit of repository gentoo-git: f36f069e888843369d525b0e67bf7c76f9a80cde Head commit of repository waebbl: 7fdece0c0c77413afbb0817ba3397a9147830bbc Timestamp of repository gentoo: Tue, 01 Feb 2022 11:07:12 +0000 Head commit of repository gentoo: fa958dad0484c811e65b8565bfce6a353a749d51 sh bash 5.1_p16 ld GNU ld (Gentoo 2.37_p1 p2) 2.37 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-lang/perl: 5.34.0-r6::gentoo dev-lang/python: 3.8.12_p1-r2::gentoo, 3.9.10-r1::gentoo-git, 3.10.2-r1::gentoo-git dev-util/cmake: 3.21.4::gentoo dev-util/meson: 0.60.3::gentoo sys-apps/baselayout: 2.8::gentoo sys-apps/sandbox: 2.29::gentoo sys-apps/systemd: 250.3::gentoo sys-devel/autoconf: 2.71-r1::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.37_p1-r2::gentoo-git sys-devel/binutils-config: 5.4::gentoo sys-devel/gcc: 11.2.1_p20220115::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/llvm: 13.0.0::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.16::gentoo (virtual/os-headers) sys-libs/glibc: 2.34-r7::gentoo-git Repositories: gentoo-git location: /var/db/repos/gentoo-git sync-type: git sync-uri: https://github.com/waebbl/gentoo.git masters: gentoo priority: 99 waebbl location: /var/db/repos/waebbl sync-type: git sync-uri: https://github.com/waebbl/waebbl-gentoo.git masters: gentoo priority: 99 gentoo location: /var/db/repos/gentoo sync-type: git sync-uri: https://github.com/gentoo-mirror/gentoo.git priority: 100 Installed sets: @tools ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--complete-graph --keep-going --fail-clean --usepkg --buildpkg --buildpkg-exclude='x11-drivers/nvidia-drivers virtual/* acct-group/* acct-user/* app-eselect/* dev-util/nvidia-cuda-toolkit' --autounmask=n --binpkg-respect-use=y --binpkg-changed-deps=y" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg buildpkg-live buildsyspkg cgroup clean-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-elog split-log strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" GENTOO_MIRRORS="https://ftp.fau.de/gentoo/ https://ftp-stud.hs-esslingen.de/pub/Mirrors/Gentoo/" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j4" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp/portage-ondisk" SHELL="/bin/bash" USE="X acl amd64 bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc multilib ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl systemd udev unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Created attachment 764165 [details] avogadrolibs-1.93.0:20220201-160130.log IMO not related to bug #712962. It looks like this is related to line 20 of ${S}/avogadro/vtk/CMakeLists.txt include_directories(SYSTEM ${VTK_INCLUDE_DIRS}) With config mode, this variable is usually no longer exported into the cache. The line should be prepended by a get_property call to retrieve the variable from the INTERFACE_INCLUDE_DIRECTORIES property.
Created attachment 764166 [details] CMakeCache.txt The cache only has variables for VTK_DIR and VTKm_DIR which point to the respective cmake locations.
Same error on sci-libs/avogadrolibs-1.95.1 btw.
Version 1.97.0 compiles just fine with USE="vtk" for me, can you confirm the problem is fixed on your end as well?
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9e97c03aece8465ab60bf30fc1807267e2238d21 commit 9e97c03aece8465ab60bf30fc1807267e2238d21 Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org> AuthorDate: 2022-09-07 09:33:34 +0000 Commit: Andrew Ammerlaan <andrewammerlaan@gentoo.org> CommitDate: 2022-09-07 09:54:52 +0000 sci-libs/avogadrolibs: add 1.97.0 Bug: https://bugs.gentoo.org/832528 Bug: https://bugs.gentoo.org/712962 Bug: https://bugs.gentoo.org/868132 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> sci-libs/avogadrolibs/Manifest | 2 + sci-libs/avogadrolibs/avogadrolibs-1.97.0.ebuild | 93 ++++++++++++++++++++++++ 2 files changed, 95 insertions(+)
