| Summary: | sci-biology/rmblast-1.2-r1 : /.../ncbi_stack_linux.cpp: fatal error: execinfo.h: No such file or directory | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo musl team <musl> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | sci-biology |
| Priority: | Normal | Keywords: | PMASKED |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 713786, 716422 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:rmblast-1.2-r1:20200404-113853.log |
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Created attachment 629894 [details]
emerge-info.txt
Created attachment 629896 [details]
emerge-history.txt
Created attachment 629898 [details]
environment
Created attachment 629900 [details]
etc.portage.tbz2
Created attachment 629902 [details]
logs.tbz2
Created attachment 629904 [details]
sci-biology:rmblast-1.2-r1:20200404-113853.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d5c451e59a806404de4c3a9428a10c04a4f77dfc commit d5c451e59a806404de4c3a9428a10c04a4f77dfc Author: Jakov Smolić <jsmolic@gentoo.org> AuthorDate: 2022-02-10 09:16:27 +0000 Commit: Jakov Smolić <jsmolic@gentoo.org> CommitDate: 2022-02-10 09:17:33 +0000 sci-biology/rmblast: treeclean Closes: https://bugs.gentoo.org/515962 Closes: https://bugs.gentoo.org/579248 Closes: https://bugs.gentoo.org/664518 Closes: https://bugs.gentoo.org/711246 Closes: https://bugs.gentoo.org/716172 Closes: https://bugs.gentoo.org/457972 Closes: https://bugs.gentoo.org/724466 Closes: https://bugs.gentoo.org/828706 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> profiles/package.mask | 1 - sci-biology/rmblast/Manifest | 2 -- sci-biology/rmblast/metadata.xml | 8 ------ sci-biology/rmblast/rmblast-1.2-r1.ebuild | 47 ------------------------------- 4 files changed, 58 deletions(-) |
Updating dependency information for /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp. In file included from /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp:45: /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack_linux.cpp:33:10: fatal error: execinfo.h: No such file or directory 33 | #include <execinfo.h> | ^~~~~~~~~~~~ compilation terminated. ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0_musl-20200328-141627 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-gentoo-linux-musl-9.3.0 * clang version 10.0.0 Target: x86_64-gentoo-linux-musl Thread model: posix InstalledDir: /usr/lib/llvm/10/bin /usr/lib/llvm/10 10.0.0 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.42.0 * The following VMs are available for generation-2: timestamp of HEAD at this tinderbox image: /var/db/repos/gentoo Sat Apr 4 10:37:53 UTC 2020 /var/db/repos/musl Sat Apr 4 03:02:24 UTC 2020 emerge -qpvO sci-biology/rmblast [ebuild N ] sci-biology/rmblast-1.2-r1