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Bug 716172 - sci-biology/rmblast-1.2-r1 : /.../ncbi_stack_linux.cpp: fatal error: execinfo.h: No such file or directory
Summary: sci-biology/rmblast-1.2-r1 : /.../ncbi_stack_linux.cpp: fatal error: execinfo...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo musl team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: missing-musl-includes 716422
  Show dependency tree
 
Reported: 2020-04-04 13:03 UTC by Toralf Förster
Modified: 2020-04-06 08:42 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.53 KB, text/plain)
2020-04-04 13:03 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,311.25 KB, text/plain)
2020-04-04 13:03 UTC, Toralf Förster
Details
environment (environment,87.43 KB, text/plain)
2020-04-04 13:03 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,25.38 KB, application/x-bzip)
2020-04-04 13:03 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,37.24 KB, application/x-bzip)
2020-04-04 13:03 UTC, Toralf Förster
Details
sci-biology:rmblast-1.2-r1:20200404-113853.log (sci-biology:rmblast-1.2-r1:20200404-113853.log,143.39 KB, text/plain)
2020-04-04 13:03 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-04-04 13:03:19 UTC
Updating dependency information for /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp.
In file included from /var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp:45:
/var/tmp/portage/sci-biology/rmblast-1.2-r1/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack_linux.cpp:33:10: fatal error: execinfo.h: No such file or directory
   33 | #include <execinfo.h>
      |          ^~~~~~~~~~~~
compilation terminated.

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl-20200328-141627

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.3.0 *
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.42.0 *
The following VMs are available for generation-2:

timestamp of HEAD at this tinderbox image:
/var/db/repos/gentoo	Sat Apr  4 10:37:53 UTC 2020
/var/db/repos/musl	Sat Apr  4 03:02:24 UTC 2020

emerge -qpvO sci-biology/rmblast
[ebuild  N    ] sci-biology/rmblast-1.2-r1
Comment 1 Toralf Förster gentoo-dev 2020-04-04 13:03:22 UTC
Created attachment 629894 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-04-04 13:03:24 UTC
Created attachment 629896 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-04-04 13:03:27 UTC
Created attachment 629898 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-04-04 13:03:30 UTC
Created attachment 629900 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-04-04 13:03:32 UTC
Created attachment 629902 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-04-04 13:03:35 UTC
Created attachment 629904 [details]
sci-biology:rmblast-1.2-r1:20200404-113853.log