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Bug 921208 - Binhost error fetching/extracting binpkgs from a file:/// local location
Summary: Binhost error fetching/extracting binpkgs from a file:/// local location
Status: RESOLVED FIXED
Alias: None
Product: Portage Development
Classification: Unclassified
Component: Binary packages support (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Portage team
URL:
Whiteboard:
Keywords: InVCS, REGRESSION
Depends on: 921177 921380
Blocks:
  Show dependency tree
 
Reported: 2024-01-02 17:21 UTC by genBTC
Modified: 2024-02-22 07:24 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Build ID is auto-incremented for no reason but it breaks everything (binpkg-id-binhost-error-1.txt,3.72 KB, text/plain)
2024-01-02 17:22 UTC, genBTC
Details
emerge --info (emergeinfo,6.52 KB, text/plain)
2024-01-02 17:28 UTC, genBTC
Details

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Description genBTC 2024-01-02 17:21:54 UTC
Binhost error during fetching/extracting stage.
Use of a file:/// local location either in make.conf PORTAGE_BINHOST or binrepos.conf sync-uri = will result in an error.

binary  N     ]  dev-python/asn1crypto-1.5.1_p20231012-1::gentoo  USE="-test" PYTHON_TARGETS="python3_11 (-pypy3) -python3_10 (-python3_12)" 333 KiB

>>> Emerging binary (1 of 2) dev-python/asn1crypto-1.5.1_p20231012::gentoo
 * /var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-2.xpak.partial

>>> Extracting info
Error reading binpkg '/var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-1.xpak': [Errno 2] No such file or directory: '/var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-1.xpak'!!! Error Extracting '/var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-1.xpak', ('dev-python/asn1crypto-1.5.1_p20231012', 1, 340016, 1703705004, 1703705004)

>>> Failed to emerge dev-python/asn1crypto-1.5.1_p20231012, Log file:


Reproducible: Always

Steps to Reproduce:
1. setting make.conf PORTAGE_BINHOST to a file:/// location And/or
similarly bugged if using binrepos.conf sync-uri = /some/path or file:///some/path
2. emerge -g (--getbinpkg) will find the ID -1 binpkg saying it will be installed
3. when it actually goes to extract the -1 id, it fails because the -1 that was fetched turned into a -2 locally.


Actual Results:  
Remote side: (normal)
# ls /mnt/crucialp1/systemd-verified-cow-1-binpkgs/dev-python/asn1crypto
asn1crypto-1.5.1_p20231012-1.xpak

Local side after the error. 
# ls /var/cache/binpkgs/dev-python/asn1crypto
asn1crypto-1.5.1_p20231012-2.xpak


Expected Results:  
Local side has no of this package and emaint binhost --fix was run on both PKGDIRs and /var/cache/edb/binhost was purged entirely. The -1 ID package from the remote SHOULD download fetch as -1 locally, and extract itself normally as -1. 
Incrementing the value should not happen in the case when the remote package lives on a file:/// type PKGDIR. 
The detection of a local file behavior is likely triggering the duplicate-ID avoidance mechanism with the host PKG by auto-incrementing to not clobber. But that cant apply here. The two PKGDIRS are not the same even though they are both local.

another user has come forward to alert me to this, named YmrDtnJu
and it seems to be a widespread issue, I was able to reproduce this and submit the bug for them.
Comment 1 genBTC 2024-01-02 17:22:35 UTC
Created attachment 881269 [details]
Build ID is auto-incremented for no reason but it breaks everything
Comment 2 genBTC 2024-01-02 17:28:08 UTC
Created attachment 881270 [details]
emerge --info

Of note they report it being broken in Portage 3.0.59 and working in 3.0.57 - to narrow it down.
Comment 3 Zac Medico gentoo-dev 2024-01-02 18:56:23 UTC
(In reply to genBTC from comment #0)
> Expected Results:  
> Local side has no of this package and emaint binhost --fix was run on both
> PKGDIRs and /var/cache/edb/binhost was purged entirely. The -1 ID package
> from the remote SHOULD download fetch as -1 locally, and extract itself
> normally as -1. 
> Incrementing the value should not happen in the case when the remote package
> lives on a file:/// type PKGDIR. 

It should increment if there is an existing file, but it seems that you don't have one, so it's odd that it incremented. Maybe it's some kind of flaw in the _allocate_filename_multi logic from https://github.com/gentoo/portage/pull/893.

> The detection of a local file behavior is likely triggering the duplicate-ID
> avoidance mechanism with the host PKG by auto-incrementing to not clobber.
> But that cant apply here. The two PKGDIRS are not the same even though they
> are both local.


Allocating a new file name should be supported if there is an existing file, however, this code in the Binpkg _unpack_metadata method uses self.settings.mycpv where it is stale:

        await self._bintree.dbapi.unpack_metadata(
            self.settings, infloc, loop=self.scheduler
        )

There's an earlier self._bintree.inject call that returns a regenerated cpv that would be valid to use instead of self.settings.mycpv:

        if self._fetched_pkg:
            pkg_path = self._bintree.getname(
                self._bintree.inject(
                    pkg.cpv,
                    current_pkg_path=self._fetched_pkg,
                    allocated_pkg_path=self._pkg_allocated_path,
                ),
                allocate_new=False,
            )
Comment 4 Zac Medico gentoo-dev 2024-01-02 19:40:14 UTC
The reason _allocate_filename_multi increments is that it calls _max_build_id which counts the remote instance.
Comment 5 Zac Medico gentoo-dev 2024-01-02 19:58:42 UTC
We can make _allocate_filename_multi simply re-use the remote build_id if the corresponding file does not exist locally. The call to _max_build_id can be skipped in this case.
Comment 6 Zac Medico gentoo-dev 2024-01-02 20:18:33 UTC
We should probably update the Package cpv attribute with the result of bintree.inject inside both BinpkgPrefetcher and Binpkg, and also in the Scheduler _run_pkg_pretend method.
Comment 7 Zac Medico gentoo-dev 2024-01-02 20:35:37 UTC
(In reply to Zac Medico from comment #6)
> We should probably update the Package cpv attribute with the result of
> bintree.inject inside both BinpkgPrefetcher and Binpkg, and also in the
> Scheduler _run_pkg_pretend method.

All of these inject calls also need error handling like EbuildBinpkg has since bug 921089.
Comment 8 Zac Medico gentoo-dev 2024-01-02 22:41:39 UTC
(In reply to genBTC from comment #0)
> >>> Emerging binary (1 of 2) dev-python/asn1crypto-1.5.1_p20231012::gentoo
>  *
> /var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-2.xpak.
> partial
> 
> >>> Extracting info
> Error reading binpkg
> '/var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-1.xpak':
> [Errno 2] No such file or directory:
> '/var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-1.xpak'!
> !! Error Extracting
> '/var/cache/binpkgs/dev-python/asn1crypto/asn1crypto-1.5.1_p20231012-1.xpak',
> ('dev-python/asn1crypto-1.5.1_p20231012', 1, 340016, 1703705004, 1703705004)

It seems like the binarytree inject failed, since the downloaded package should have had the same instance key, but the messages seem to indicate that the key is missing (which explains why the path is incorrect). Error handling around the binarytree inject call will help if there are any other bugs lurking here.
Comment 9 Zac Medico gentoo-dev 2024-01-03 05:46:22 UTC
There's a regression from bug 921089 because FileCopier does not preserve timestamps. This fixed lib/portage/tests/emerge/test_binpkg_fetch.py in https://github.com/gentoo/portage/pull/1227:


--- a/lib/_emerge/BinpkgFetcher.py
+++ b/lib/_emerge/BinpkgFetcher.py
@@ -106,7 +106,8 @@ class BinpkgFetcher(CompositeTask):
                 finally:
                     if copier.isAlive():
                         copier.cancel()
-
+                if copier.returncode == os.EX_OK:
+                    fetcher.sync_timestamp()
             else:
                 fetcher.start()
                 try:
Comment 10 Larry the Git Cow gentoo-dev 2024-01-03 05:57:59 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/proj/portage.git/commit/?id=6c915f3ded10c23127c33b771453d54e3f0d4915

commit 6c915f3ded10c23127c33b771453d54e3f0d4915
Author:     Zac Medico <zmedico@gentoo.org>
AuthorDate: 2024-01-03 04:26:36 +0000
Commit:     Zac Medico <zmedico@gentoo.org>
CommitDate: 2024-01-03 05:56:59 +0000

    binarytree: Avoid unnecessary build id incrementation
    
    When allocating a local file name for a remote package,
    prefer re-using the existing build id if the file name
    is unused locally, in order to avoid unnecessary build
    id incrementation triggered when the _max_build_id
    method counts remote build ids. Use the same file name
    reservation via open with O_EXCL which has been used
    during build_id incrementation since fa901a6510c.
    
    Bug: https://bugs.gentoo.org/921208
    Signed-off-by: Zac Medico <zmedico@gentoo.org>

 lib/portage/dbapi/bintree.py | 39 ++++++++++++++++++++++++++++-----------
 1 file changed, 28 insertions(+), 11 deletions(-)
Comment 11 Larry the Git Cow gentoo-dev 2024-01-03 19:59:54 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/proj/portage.git/commit/?id=d8285bad5815f0f2db64657dd245efc3fe948210

commit d8285bad5815f0f2db64657dd245efc3fe948210
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-01-03 06:08:53 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-01-03 19:59:51 +0000

    BinpkgFetcher: preserve mtime
    
    The FileCopier from 1db44d18578a7aee58449cb97e1991cb06c915c3 doesn't preserve
    its timestamp so there's a mismatch between the expected mtime in the index
    and the binpkg.
    
    Bug: https://bugs.gentoo.org/921208
    Thanks-to: Zac Medico <zmedico@gentoo.org>
    Signed-off-by: Sam James <sam@gentoo.org>

 lib/_emerge/BinpkgFetcher.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

https://gitweb.gentoo.org/proj/portage.git/commit/?id=14ec6c259ca5bd7439ede37216bbb0d160e909e9

commit 14ec6c259ca5bd7439ede37216bbb0d160e909e9
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-01-03 04:22:24 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-01-03 19:59:51 +0000

    tests: add getbinpkg file:// sync testcase for BUILD_ID
    
    We do a bit of a strange dance here where we:
    1) create a binpkg;
    2) shift the PKGDIR so that it becomes a "remote" one for use with file:///;
    3) try to merge the binpkg but defer checking the exit status;
    4) check if the downloaded filename was unnecessarily incremented (-2). if it is,
    fail.
    5) check the deferred exit status from 3) so that we fail if the merge failed
    for another reason (e.g. failed injection).
    
    Bug: https://bugs.gentoo.org/921208
    Signed-off-by: Sam James <sam@gentoo.org>

 lib/portage/tests/emerge/meson.build          |   1 +
 lib/portage/tests/emerge/test_binpkg_fetch.py | 226 ++++++++++++++++++++++++++
 2 files changed, 227 insertions(+)
Comment 12 Larry the Git Cow gentoo-dev 2024-01-05 08:24:16 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b37b3b5340a35656651134154b193dbda7cf13c6

commit b37b3b5340a35656651134154b193dbda7cf13c6
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-01-05 08:23:30 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-01-05 08:23:30 +0000

    sys-apps/portage: add 3.0.61
    
    Note that bug #921208 is only partly fixed but I wanted to get these fixes out,
    in part because we've got more people trying binpkgs right now with the binhost
    announcement.
    
    Bug: https://bugs.gentoo.org/921208
    Closes: https://bugs.gentoo.org/921177
    Closes: https://bugs.gentoo.org/920180
    Closes: https://bugs.gentoo.org/921181
    Closes: https://bugs.gentoo.org/921327
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-apps/portage/Manifest              |   1 +
 sys-apps/portage/portage-3.0.61.ebuild | 246 +++++++++++++++++++++++++++++++++
 2 files changed, 247 insertions(+)
Comment 13 Larry the Git Cow gentoo-dev 2024-02-22 07:24:10 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=77c44c46194922509bc4f2b5cfc099412a560a69

commit 77c44c46194922509bc4f2b5cfc099412a560a69
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-02-22 07:23:40 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-02-22 07:23:50 +0000

    sys-apps/portage: add 3.0.62
    
    Closes: https://bugs.gentoo.org/663324
    Closes: https://bugs.gentoo.org/728046
    Closes: https://bugs.gentoo.org/891137
    Closes: https://bugs.gentoo.org/906368
    Closes: https://bugs.gentoo.org/916566
    Closes: https://bugs.gentoo.org/921170
    Closes: https://bugs.gentoo.org/921208
    Closes: https://bugs.gentoo.org/921400
    Closes: https://bugs.gentoo.org/922038
    Closes: https://bugs.gentoo.org/922142
    Closes: https://bugs.gentoo.org/923368
    Closes: https://bugs.gentoo.org/923750
    Closes: https://bugs.gentoo.org/923841
    Closes: https://bugs.gentoo.org/923852
    Closes: https://bugs.gentoo.org/923854
    Closes: https://bugs.gentoo.org/924192
    Closes: https://bugs.gentoo.org/924273
    Closes: https://bugs.gentoo.org/924585
    Closes: https://bugs.gentoo.org/921380
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-apps/portage/Manifest              |   1 +
 sys-apps/portage/portage-3.0.62.ebuild | 246 +++++++++++++++++++++++++++++++++
 2 files changed, 247 insertions(+)