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Bug 873025 - sci-biology/augustus-3.4.0-r2 fails tests (MUSL)
Summary: sci-biology/augustus-3.4.0-r2 fails tests (MUSL)
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-09-26 09:21 UTC by Agostino Sarubbo
Modified: 2022-09-26 09:21 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,831.20 KB, text/plain)
2022-09-26 09:21 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-09-26 09:21:45 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/augustus-3.4.0-r2 fails tests (MUSL).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
This machine uses MUSL libc
Comment 1 Agostino Sarubbo gentoo-dev 2022-09-26 09:21:49 UTC
Created attachment 814237 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-09-26 09:21:50 UTC
Error(s) that match a know pattern:


' != ''
' != '' : *** expected_results/test_ab_initio_prediction/augustus.gff
' != '' : *** expected_results/test_format_and_error_out/augustus.gff3
' != '' : *** expected_results/test_training_new_species/test.out
AssertionError: '*** ../../tests/examples/expected_results[4451 chars]";
AssertionError: '*** ../../tests/examples/expected_results[5307 chars]";
AssertionError: '*** ../../tests/examples/expected_results[5421 chars]";
AssertionError: '*** expected_results/test_ab_initio_predi[405399 chars]";
AssertionError: '*** expected_results/test_format_and_erro[264026 chars]t1
AssertionError: '*** expected_results/test_training_new_sp[136692 chars]";
FAIL: test_ab_initio_prediction (__main__.TestAugustus)
FAIL: test_cgp (__main__.TestAugustus)
FAIL: test_cgp_sqlite (__main__.TestAugustus)
FAIL: test_cgp_sqlite_hints (__main__.TestAugustus)
FAIL: test_format_and_error_out (__main__.TestAugustus)
FAIL: test_training_new_species (__main__.TestAugustus)
FAILED (failures=6)