* Package: sci-biology/augustus-3.4.0-r2:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/de9c67a261a11b7de9990ba4120c5018efef7e87 (Sat Sep 24 15:46:48 UTC 2022) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.37 (python 3.10.7-final-0, default/linux/amd64/17.0/musl/hardened, gcc-12.2.0, musl-1.2.3-r4, 5.10.133-gentoo x86_64) ================================================================= System uname: Linux-5.10.133-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc KiB Mem: 264024340 total, 60708032 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sat, 24 Sep 2022 15:46:48 +0000 sh bash 5.1_p16-r2 ld GNU ld (Gentoo 2.39 p4) 2.39.0 app-misc/pax-utils: 1.3.5::gentoo app-shells/bash: 5.1_p16-r2::gentoo dev-lang/perl: 5.36.0::gentoo dev-lang/python: 3.8.14::gentoo, 3.9.14::gentoo, 3.10.7::gentoo, 3.11.0_rc2::gentoo dev-util/cmake: 3.24.2::gentoo dev-util/meson: 0.63.2-r1::gentoo sys-apps/baselayout: 2.9::gentoo sys-apps/openrc: 0.45.2::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/autoconf: 2.71-r4::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.39-r2::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/gcc: 12.2.0::gentoo sys-devel/gcc-config: 2.6::gentoo sys-devel/libtool: 2.4.7::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.19::gentoo (virtual/os-headers) sys-libs/musl: 1.2.3-r4::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* Artistic" CBUILD="x86_64-gentoo-linux-musl" CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" CHOST="x86_64-gentoo-linux-musl" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" DISTDIR="/var/tmp/portage/sci-biology/augustus-3.4.0-r2/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j4" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl amd64 bzip2 cli crypt dri elogind fortran hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## 2022-09-24T16:57:33 >>> sci-libs/htslib-1.15.1 2022-09-24T16:57:40 >>> app-arch/lz4-1.9.4 2022-09-24T16:57:30 >>> sci-libs/suitesparseconfig-5.4.0 2022-09-24T16:57:35 >>> virtual/fortran-0-r1 2022-09-24T16:57:31 >>> dev-util/b2-4.9.2 2022-09-24T16:57:38 >>> sci-libs/metis-5.1.0-r5 2022-09-24T16:57:36 >>> sci-libs/gsl-2.7.1-r1 2022-09-24T16:57:42 >>> sci-biology/bamtools-2.5.2 2022-09-24T16:58:08 >>> dev-db/mysql-connector-c-8.0.27-r1 2022-09-24T16:58:12 >>> sci-libs/colamd-2.9.6 2022-09-24T16:58:19 >>> sci-libs/cxsparse-3.2.0 2022-09-24T16:58:15 >>> sci-libs/ccolamd-2.9.6 2022-09-24T16:58:44 >>> dev-libs/boost-1.80.0 2022-09-24T16:58:45 >>> sci-libs/camd-2.4.6-r1 2022-09-24T16:58:14 >>> sci-libs/btf-1.2.6 2022-09-24T16:58:03 >>> sci-biology/samtools-1.15.1 2022-09-24T16:58:48 >>> sci-libs/lapack-3.10.1 2022-09-24T16:59:02 >>> dev-db/mysql++-3.3.0 2022-09-24T16:58:21 >>> sci-libs/ldl-2.2.6 2022-09-24T16:58:51 >>> sci-libs/amd-2.4.6-r1 2022-09-24T16:59:10 >>> sci-mathematics/lpsolve-5.5.2.0-r1 2022-09-24T17:00:38 >>> virtual/blas-3.8 2022-09-24T17:00:35 >>> virtual/lapack-3.10 2022-09-24T17:00:48 >>> sci-libs/klu-1.3.9-r2 2022-09-24T17:01:04 >>> sci-libs/cholmod-3.0.13 2022-09-24T17:02:03 >>> sci-libs/umfpack-5.7.9 2022-09-24T17:02:02 >>> sci-libs/spqr-2.0.9-r2 2022-09-24T17:02:50 >>> sci-libs/suitesparse-5.4.0 ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r1:0 acct-group/cdrom-0-r1:0 acct-group/dialout-0-r1:0 acct-group/disk-0-r1:0 acct-group/input-0-r1:0 acct-group/kmem-0-r1:0 acct-group/kvm-0-r1:0 acct-group/lp-0-r1:0 acct-group/man-0-r1:0 acct-group/messagebus-0-r1:0 acct-group/portage-0:0 acct-group/render-0-r1:0 acct-group/sgx-0:0 acct-group/sshd-0-r1:0 acct-group/tape-0-r1:0 acct-group/tty-0-r1:0 acct-group/video-0-r1:0 acct-user/man-1-r1:0 acct-user/messagebus-0-r1:0 acct-user/portage-0:0 acct-user/sshd-0-r1:0 app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.30:0 app-arch/bzip2-1.0.8-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig app-arch/gzip-1.12-r2:0 -pic -static -verify-sig app-arch/libarchive-3.6.1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd app-arch/lz4-1.9.4:0/r132 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr app-arch/unzip-6.0_p27:0 bzip2 -natspec unicode app-arch/xz-utils-5.2.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr 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python_targets_python3_9 -test -tools app-portage/gentoolkit-0.6.1-r3:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test app-portage/portage-utils-0.94.3:0 openmp qmanifest qtegrity -static app-shells/bash-5.1_p16-r2:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline -verify-sig app-shells/bash-completion-2.11:0 eselect -test app-shells/gentoo-bashcomp-20190211-r1:0 app-shells/push-3.4:0 app-shells/quoter-4.2:0 app-text/ansifilter-2.18:0 -qt5 app-text/build-docbook-catalog-2.3-r1:0 app-text/docbook-xml-dtd-4.5-r2:4.5 app-text/docbook-xml-dtd-4.4-r3:4.4 app-text/docbook-xml-dtd-4.2-r3:4.2 app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby app-text/manpager-1:0 app-text/sgml-common-0.6.3-r7:0 app-text/xmlto-0.0.28-r9:0 -latex text dev-db/mysql++-3.3.0:0/3 -doc dev-db/mysql-connector-c-8.0.27-r1:0/21 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ldap -static-libs dev-db/sqlite-3.39.3:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools dev-lang/perl-5.36.0:0/5.36 -berkdb -debug -doc -gdbm ithreads -minimal -quadmath dev-lang/python-3.11.0_rc2:3.11 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig dev-lang/python-3.10.7:3.10 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig xml dev-lang/python-3.9.14:3.9 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig xml dev-lang/python-3.8.14:3.8 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml dev-lang/python-exec-2.4.9:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads dev-libs/boehm-gc-8.2.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads dev-libs/boost-1.80.0:0/1.80.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -context -debug -doc -icu -lzma -mpi nls -numpy -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -tools zlib -zstd dev-libs/elfutils-0.187-r2:0 -abi_mips_n32 -abi_mips_n64 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l10n_ja -lynxkeymap nls -nntp ssl unicode -xface x11-apps/xprop-1.2.5:0 x11-apps/xset-1.2.4-r1:0 x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 x11-base/xorg-proto-2022.2:0 -test x11-libs/cairo-1.16.0-r5:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind x11-libs/libICE-1.0.10-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6 x11-libs/libSM-1.2.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 uuid x11-libs/libX11-1.8.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test x11-libs/libXau-1.0.10:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb x11-libs/libXdmcp-1.1.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXext-1.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXmu-1.1.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test x11-libs/xtrans-1.4.0:0 -doc x11-misc/compose-tables-1.8.1:0 x11-misc/shared-mime-info-2.2:0 -test x11-misc/xdg-utils-1.1.3_p20210805:0 -dbus -doc -gnome ####################### # build.log # ####################### >>> Unpacking source... >>> Unpacking augustus-3.4.0.tar.gz to /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work >>> Source unpacked in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work >>> Preparing source in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0 ... make -j4 LINK.cc=x86_64-gentoo-linux-musl-g++ mkdir -p bin cd src && make make[1]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/src' x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o genbank.o genbank.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o properties.o properties.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_profile.o pp_profile.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_hitseq.o pp_hitseq.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_scoring.o pp_scoring.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o statemodel.o statemodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o namgene.o namgene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o types.o types.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o gene.o gene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o evaluation.o evaluation.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o motif.o motif.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o geneticcode.o geneticcode.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o hints.o hints.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o extrinsicinfo.o extrinsicinfo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o projectio.o projectio.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ hints.cc: In function 'std::istream& operator>>(std::istream&, Feature&)': hints.cc:82:16: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 82 | strncpy(copybuff, buff, 1014); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o intronmodel.o intronmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exonmodel.o exonmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o igenicmodel.o igenicmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o utrmodel.o utrmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o merkmal.o merkmal.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o vitmatrix.o vitmatrix.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o lldouble.o lldouble.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o mea.o mea.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o graph.o graph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o meaPath.o meaPath.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exoncand.o exoncand.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o randseqaccess.o randseqaccess.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o fasta.o fasta.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o ncmodel.o ncmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o parser/parse.o parser/parse.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o scanner/lex.o scanner/lex.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o genomicMSA.o genomicMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o geneMSA.o geneMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o contTimeMC.o contTimeMC.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o codonevo.o codonevo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o compgenepred.o compgenepred.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o phylotree.o phylotree.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o orthograph.o orthograph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o orthoexon.o orthoexon.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o alignment.o alignment.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o speciesgraph.o speciesgraph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o codonMSA.o codonMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o train_logReg_param.o train_logReg_param.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o tokenizer.o tokenizer.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o sqliteDB.o sqliteDB.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o commontrain.o commontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o igenictrain.o igenictrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o introntrain.o introntrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exontrain.o exontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o utrtrain.o utrtrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o dummy.o dummy.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o prepareAlign pp_prepare_align.cc x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o pp_simScore pp_simscore.cc fasta.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o load2db load2db.cc fasta.o hints.o types.o properties.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 cp prepareAlign ../bin/ x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o getSeq getSeq.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o load2sqlitedb load2sqlitedb.cc fasta.o hints.o types.o properties.o lldouble.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 cp getSeq ../bin/ echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE" > cxxflags x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 cp load2db ../bin/ x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 cp pp_simScore ../bin/ x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 cp load2sqlitedb ../bin/ cp fastBlockSearch ../bin/ cp etraining ../bin/ cp augustus ../bin/ make[1]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/src' cd auxprogs && make make[1]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs' cd aln2wig; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/aln2wig' x86_64-gentoo-linux-musl-gcc -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c aln2wig.c aln2wig.c: In function 'main': aln2wig.c:454:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 454 | strncpy(completedChromosomes[completedChromosomeCount-1],oldname,TOKEN_SIZE-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aln2wig.c:460:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 460 | strncpy(oldname,name,TOKEN_SIZE-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aln2wig.c:327:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 327 | strncpy(completedChromosomes[completedChromosomeCount-1],oldname,TOKEN_SIZE-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aln2wig.c:334:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 334 | strncpy(oldname,name,TOKEN_SIZE-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-gentoo-linux-musl-gcc -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o aln2wig aln2wig.o mkdir -p ../../bin cp aln2wig ../../bin make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/aln2wig' cd bam2hints; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2hints' x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2 -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/list:63, from bam2hints.cc:9: In member function 'std::_List_iterator< >::_Self std::_List_iterator< >::operator++(int) [with _Tp = hint_t]', inlined from 'void printHints(FILE*, const char*)' at bam2hints.cc:326:121: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_list.h:297:28: warning: pointer used after 'void operator delete(void*, std::size_t)' [-Wuse-after-free[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wuse-after-free]] 297 | _M_node = _M_node->_M_next; | ~~~~~~~~~^~~~~~~ In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/x86_64-gentoo-linux-musl/bits/c++allocator.h:33, from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/allocator.h:46, from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/list:61: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/alloc_traits.h:496:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = hint_t; _Alloc = std::allocator]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = hint_t; _Alloc = std::allocator]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_list.h:2024:13, inlined from 'std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::erase(const_iterator) [with _Tp = hint_t; _Alloc = std::allocator]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/list.tcc:158:15, inlined from 'void printHints(FILE*, const char*)' at bam2hints.cc:334:26: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/new_allocator.h:158:33: note: call to 'void operator delete(void*, std::size_t)' here 158 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o bam2hints bam2hints.o -lbamtools -lz mkdir -p ../../bin cp bam2hints ../../bin make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2hints' cd compileSpliceCands; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/compileSpliceCands' x86_64-gentoo-linux-musl-gcc -Wall -pedantic -ansi -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c compileSpliceCands.c x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o list.o list.c compileSpliceCands.c: In function 'getChromosome': compileSpliceCands.c:216:9: warning: 'strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-overflow=]] 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c: In function 'parseLine': compileSpliceCands.c:292:9: warning: 'strncpy' specified bound 256 equals destination size [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 292 | strncpy(d->name,tokens[0],LINEBUFFER); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c: In function 'parseList': compileSpliceCands.c:337:59: warning: 'left' may be used uninitialized [-Wmaybe-uninitialized[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized]] 337 | if(isCompatibleStrand(left->strand,right->strand)) | ~~~~^~~~~~~~ compileSpliceCands.c:314:14: note: 'left' was declared here 314 | Data left; | ^~~~ compileSpliceCands.c: In function 'main': compileSpliceCands.c:563:17: warning: 'chromosomeLength' may be used uninitialized [-Wmaybe-uninitialized[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized]] 563 | parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compileSpliceCands.c:416:18: note: 'chromosomeLength' was declared here 416 | long int chromosomeLength; | ^~~~~~~~~~~~~~~~ x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o compileSpliceCands compileSpliceCands.o list.o cp compileSpliceCands ../../bin/compileSpliceCands make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/compileSpliceCands' cd filterBam; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam' (cd src;make) make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam/src' x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools In file included from filterBam.cc:17: /usr/include/bamtools/api/algorithms/Sort.h:64:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/string:48, from /usr/include/bamtools/api/BamReader.h:13, from filterBam.cc:14: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools filterBam compiled with BAMTOOLS=/usr/include/bamtools x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz mkdir -p ../../../bin mv filterBam ../../../bin/filterBam make[3]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam/src' make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam' cd homGeneMapping; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping' (cd src; make) make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping/src' x86_64-gentoo-linux-musl-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o gene.o gene.cc -I../include x86_64-gentoo-linux-musl-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o genome.o genome.cc -I../include x86_64-gentoo-linux-musl-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o sqliteDB.o sqliteDB.cc -I../include x86_64-gentoo-linux-musl-g++ -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o homGeneMapping main.cc gene.o genome.o sqliteDB.o -I../include -lsqlite3 mkdir -p ../../../bin/ cp homGeneMapping ../../../bin/homGeneMapping make[3]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping/src' make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping' cd joingenes; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/joingenes' x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x joingenes.cpp x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x jg_transcript.cpp x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x jg_ios.cpp jg_ios.cpp: In function 'void load(std::unordered_map, Gene*>&, std::string&, int&, std::unordered_map, bool>&, Properties&)': jg_ios.cpp:251:14: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 251 | strncpy(copybuff, buff, 1014); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ jg_ios.cpp:79:14: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 79 | strncpy(copybuff, buff, 1014); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ jg_ios.cpp:148:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 300 equals destination size [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] 148 | strncpy(attribute, temp, 300); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 joingenes.o jg_transcript.o jg_ios.o -o joingenes mkdir -p ../../bin/ cp joingenes ../../bin/ make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/joingenes' cd utrrnaseq/Debug; make all; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/utrrnaseq/Debug' Building file: ../src/Compute_UTRs.cpp Building file: ../src/Coord_Transform.cpp Invoking: GCC C++ Compiler Building file: ../src/Genomic_Data.cpp g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Compute_UTRs.d" -MT"src/Compute_UTRs.o" -o "src/Compute_UTRs.o" "../src/Compute_UTRs.cpp" Building file: ../src/Splice_Sites.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Coord_Transform.d" -MT"src/Coord_Transform.o" -o "src/Coord_Transform.o" "../src/Coord_Transform.cpp" Invoking: GCC C++ Compiler Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Splice_Sites.d" -MT"src/Splice_Sites.o" -o "src/Splice_Sites.o" "../src/Splice_Sites.cpp" g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Genomic_Data.d" -MT"src/Genomic_Data.o" -o "src/Genomic_Data.o" "../src/Genomic_Data.cpp" ../src/Coord_Transform.cpp:25:59: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 25 | template struct finding_intron_greater_s : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/refwrap.h:39, from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/vector:66, from ../src/flex_vec.hpp:8, from ../src/Coord_Transform.cpp:5: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/Coord_Transform.cpp:33:58: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 33 | template struct finding_intron_lesser_s : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/Coord_Transform.cpp:41:59: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 41 | template struct finding_intron_greater_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/Coord_Transform.cpp:49:58: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 49 | template struct finding_intron_lesser_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/Coord_Transform.cpp: In constructor 'Coord_Transform::Coord_Transform(unsigned int, int, unsigned int, unsigned int, unsigned int, unsigned int, std::vector*)': ../src/Coord_Transform.cpp:77:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_s; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 77 | bind2nd(finding_intron_greater_s(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:1438: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/Coord_Transform.cpp:81:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_e; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 81 | bind2nd(finding_intron_greater_e(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/Coord_Transform.cpp:89:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_e; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 89 | bind2nd(finding_intron_lesser_e(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/Coord_Transform.cpp:93:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_s; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 93 | bind2nd(finding_intron_lesser_s(), i)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ Finished building: ../src/Coord_Transform.cpp Building file: ../src/Supporting_Methods.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Supporting_Methods.d" -MT"src/Supporting_Methods.o" -o "src/Supporting_Methods.o" "../src/Supporting_Methods.cpp" Finished building: ../src/Supporting_Methods.cpp Building file: ../src/Test.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Test.d" -MT"src/Test.o" -o "src/Test.o" "../src/Test.cpp" Finished building: ../src/Splice_Sites.cpp Building file: ../src/UTRs.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/UTRs.d" -MT"src/UTRs.o" -o "src/UTRs.o" "../src/UTRs.cpp" Finished building: ../src/Compute_UTRs.cpp Building file: ../src/main.cpp Invoking: GCC C++ Compiler g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/main.d" -MT"src/main.o" -o "src/main.o" "../src/main.cpp" ../src/UTRs.cpp:83:9: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 83 | binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/string:48, from ../src/Genomic_Data.hpp:8, from ../src/UTRs.cpp:5: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp:92:9: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 92 | binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp:100:59: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 100 | template struct finding_intron_greater_s : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp:108:58: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 108 | template struct finding_intron_lesser_s : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp:116:59: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 116 | template struct finding_intron_greater_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp:124:58: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 124 | template struct finding_intron_lesser_e : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp:133:49: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 133 | template struct finding_repeat : binary_function { | ^~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../src/UTRs.cpp: In static member function 'static unsigned int UTRs::get_max_pos(unsigned int, int, unsigned int, unsigned int, std::vector*)': ../src/UTRs.cpp:181:64: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_coding_region_greater; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 181 | bind2nd(finding_coding_region_greater(), pos)) : | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:1438: /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/UTRs.cpp:183:65: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_coding_region_lesser; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 183 | bind2nd(finding_coding_region_lesser(), pos)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/UTRs.cpp: In static member function 'static bool UTRs::repeat_in_UTR(unsigned int, unsigned int, std::vector*)': ../src/UTRs.cpp:196:63: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_repeat; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 196 | it = find_if(repeats->begin(), repeats->end(), bind2nd(finding_repeat(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/UTRs.cpp: In static member function 'static std::vector UTRs::find_introns_in_range(unsigned int, unsigned int, int, std::vector*)': ../src/UTRs.cpp:233:79: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_s; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 233 | it = find_if(introns->begin(), introns->end(), bind2nd(finding_intron_greater_s(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/UTRs.cpp:240:79: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_e; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 240 | it = find_if(introns->begin(), introns->end(), bind2nd(finding_intron_greater_e(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/UTRs.cpp:252:93: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_e; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 252 | d_if(reverse_introns.begin(), reverse_introns.end(), bind2nd(finding_intron_lesser_e(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ ../src/UTRs.cpp:259:93: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_s; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] 259 | d_if(reverse_introns.begin(), reverse_introns.end(), bind2nd(finding_intron_lesser_s(), start)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ Finished building: ../src/Genomic_Data.cpp Finished building: ../src/Test.cpp Finished building: ../src/main.cpp Finished building: ../src/UTRs.cpp Building target: utrrnaseq Invoking: GCC C++ Linker x86_64-gentoo-linux-musl-g++ -o "utrrnaseq" ./src/Compute_UTRs.o ./src/Coord_Transform.o ./src/Genomic_Data.o ./src/Splice_Sites.o ./src/Supporting_Methods.o ./src/Test.o ./src/UTRs.o ./src/main.o Finished building target: utrrnaseq make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/utrrnaseq/Debug' cd bam2wig; make; make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2wig' x86_64-gentoo-linux-musl-gcc -Wall -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c bam2wig.c -o bam2wig.o -I/usr/include/htslib x86_64-gentoo-linux-musl-gcc -Wall -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 bam2wig.o -o bam2wig -lhts -lz -lpthread mkdir -p ../../bin cp bam2wig ../../bin/bam2wig make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2wig' make[1]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs' >>> Source compiled. >>> Test phase: sci-biology/augustus-3.4.0-r2 make -j4 test cd tests/examples && ./testcases.py --compare --html Removing generated test files... ---------------------------------------------------------------------- Executing small test suite ---------------------------------------------------------------------- Creating SQLite database for cgp test cases... test_utr_on (__main__.TestAugustus) ... ok test_hints_MPE (__main__.TestAugustus) ... ok test_training_new_species (__main__.TestAugustus) ... FAIL test_ab_initio_prediction (__main__.TestAugustus) ... FAIL test_format_and_error_out (__main__.TestAugustus) ... FAIL test_cgp (__main__.TestAugustus) ... FAIL test_cgp_sqlite (__main__.TestAugustus) ... FAIL test_cgp_sqlite_hints (__main__.TestAugustus) ... FAIL ====================================================================== FAIL: test_training_new_species (__main__.TestAugustus) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 407, in test_training_new_species self.training_new_species(False) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 460, in training_new_species self.assertEqualFolders(reffolder, resfolder) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders self.assertEqual(diff, '', diff) AssertionError: '*** expected_results/test_training_new_sp[136692 chars]";\n' != '' : *** expected_results/test_training_new_species/test.out --- results/test_training_new_species/test.out *************** *** 25,28 **** ! chr2L_6215-22136 AUGUSTUS gene 1 1906 0.65 + . g1 ! chr2L_6215-22136 AUGUSTUS transcript 1 1906 0.65 + . g1.t1 ! chr2L_6215-22136 AUGUSTUS intron 1 1359 1 + . transcript_id "g1.t1"; gene_id "g1"; ! chr2L_6215-22136 AUGUSTUS CDS 1360 1906 0.65 + 1 transcript_id "g1.t1"; gene_id "g1"; --- 25,28 ---- ! chr2L_6215-22136 AUGUSTUS gene 1 1906 0.72 + . g1 ! chr2L_6215-22136 AUGUSTUS transcript 1 1906 0.72 + . g1.t1 ! chr2L_6215-22136 AUGUSTUS intron 1 1359 0.99 + . transcript_id "g1.t1"; gene_id "g1"; ! chr2L_6215-22136 AUGUSTUS CDS 1360 1906 0.72 + 1 transcript_id "g1.t1"; gene_id "g1"; *************** *** 36,37 **** ! chr2L_6215-22136 AUGUSTUS gene 2550 3062 0.64 + . g2 ! chr2L_6215-22136 AUGUSTUS transcript 2550 3062 0.64 + . g2.t1 --- 36,37 ---- ! chr2L_6215-22136 AUGUSTUS gene 2550 3062 0.73 + . g2 ! chr2L_6215-22136 AUGUSTUS transcript 2550 3062 0.73 + . g2.t1 *************** *** 39 **** ! chr2L_6215-22136 AUGUSTUS CDS 2550 3062 0.64 + 0 transcript_id "g2.t1"; gene_id "g2"; --- 39 ---- ! chr2L_6215-22136 AUGUSTUS CDS 2550 3062 0.73 + 0 transcript_id "g2.t1"; gene_id "g2"; *************** *** 105,108 **** ! chr2L_115837-121448 AUGUSTUS gene 1 3222 0.47 - . g3 ! chr2L_115837-121448 AUGUSTUS transcript 1 3222 0.47 - . g3.t1 ! chr2L_115837-121448 AUGUSTUS intron 296 2299 0.68 - . transcript_id "g3.t1"; gene_id "g3"; ! chr2L_115837-121448 AUGUSTUS intron 2469 2524 0.99 - . transcript_id "g3.t1"; gene_id "g3"; --- 105,108 ---- ! chr2L_115837-121448 AUGUSTUS gene 1 3222 0.54 - . g3 ! chr2L_115837-121448 AUGUSTUS transcript 1 3222 0.54 - . g3.t1 ! chr2L_115837-121448 AUGUSTUS intron 296 2299 0.7 - . transcript_id "g3.t1"; gene_id "g3"; ! chr2L_115837-121448 AUGUSTUS intron 2469 2524 0.98 - . transcript_id "g3.t1"; gene_id "g3"; *************** *** 110,111 **** ! chr2L_115837-121448 AUGUSTUS CDS 1 295 0.57 - 2 transcript_id "g3.t1"; gene_id "g3"; ! chr2L_115837-121448 AUGUSTUS CDS 2300 2468 0.99 - 0 transcript_id "g3.t1"; gene_id "g3"; --- 110,111 ---- ! chr2L_115837-121448 AUGUSTUS CDS 1 295 0.68 - 2 transcript_id "g3.t1"; gene_id "g3"; ! chr2L_115837-121448 AUGUSTUS CDS 2300 2468 0.97 - 0 transcript_id "g3.t1"; gene_id "g3"; *************** *** 113 **** ! chr2L_115837-121448 AUGUSTUS CDS 3095 3222 0.82 - 0 transcript_id "g3.t1"; gene_id "g3"; --- 113 ---- ! chr2L_115837-121448 AUGUSTUS CDS 3095 3222 0.83 - 0 transcript_id "g3.t1"; gene_id "g3"; *************** *** 132,133 **** ! chr2L_138531-144234 AUGUSTUS gene 165 602 0.48 - . g4 ! chr2L_138531-144234 AUGUSTUS transcript 165 602 0.48 - . g4.t1 --- 132,133 ---- ! chr2L_138531-144234 AUGUSTUS gene 165 602 0.37 - . g4 ! chr2L_138531-144234 AUGUSTUS transcript 165 602 0.37 - . g4.t1 *************** *** 135 **** ! chr2L_138531-144234 AUGUSTUS CDS 165 602 0.48 - 0 transcript_id "g4.t1"; gene_id "g4"; --- 135 ---- ! chr2L_138531-144234 AUGUSTUS CDS 165 602 0.37 - 0 transcript_id "g4.t1"; gene_id "g4"; *************** *** 142,143 **** ! chr2L_138531-144234 AUGUSTUS gene 941 3957 0.56 - . g5 ! chr2L_138531-144234 AUGUSTUS transcript 941 3957 0.56 - . g5.t1 --- 142,143 ---- ! chr2L_138531-144234 AUGUSTUS gene 941 3957 0.58 - . g5 ! chr2L_138531-144234 AUGUSTUS transcript 941 3957 0.58 - . g5.t1 *************** *** 145,153 **** ! chr2L_138531-144234 AUGUSTUS intron 1158 1210 1 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS intron 1425 1583 0.83 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS intron 2435 2865 0.77 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS intron 3080 3131 0.89 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 941 1157 0.97 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 1211 1424 1 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 1584 2434 0.64 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 2866 3079 0.99 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 3132 3957 0.89 - 0 transcript_id "g5.t1"; gene_id "g5"; --- 145,153 ---- ! chr2L_138531-144234 AUGUSTUS intron 1158 1210 0.97 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS intron 1425 1583 0.85 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS intron 2435 2865 0.85 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS intron 3080 3131 0.81 - . transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 941 1157 0.98 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 1211 1424 0.97 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 1584 2434 0.73 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 2866 3079 0.97 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chr2L_138531-144234 AUGUSTUS CDS 3132 3957 0.82 - 0 transcript_id "g5.t1"; gene_id "g5"; *************** *** 167,168 **** ! chr2L_138531-144234 AUGUSTUS gene 4875 5564 0.62 + . g6 ! chr2L_138531-144234 AUGUSTUS transcript 4875 5564 0.62 + . g6.t1 --- 167,168 ---- ! chr2L_138531-144234 AUGUSTUS gene 4875 5564 0.65 + . g6 ! chr2L_138531-144234 AUGUSTUS transcript 4875 5564 0.65 + . g6.t1 *************** *** 170 **** ! chr2L_138531-144234 AUGUSTUS CDS 4875 5564 0.62 + 0 transcript_id "g6.t1"; gene_id "g6"; --- 170 ---- ! chr2L_138531-144234 AUGUSTUS CDS 4875 5564 0.65 + 0 transcript_id "g6.t1"; gene_id "g6"; *************** *** 190,191 **** ! chr2L_155410-156095 AUGUSTUS gene 163 541 0.29 + . g7 ! chr2L_155410-156095 AUGUSTUS transcript 163 541 0.29 + . g7.t1 --- 190,191 ---- ! chr2L_155410-156095 AUGUSTUS gene 163 541 0.42 + . g7 ! chr2L_155410-156095 AUGUSTUS transcript 163 541 0.42 + . g7.t1 *************** *** 194 **** ! chr2L_155410-156095 AUGUSTUS CDS 163 375 0.29 + 0 transcript_id "g7.t1"; gene_id "g7"; --- 194 ---- ! chr2L_155410-156095 AUGUSTUS CDS 163 375 0.42 + 0 transcript_id "g7.t1"; gene_id "g7"; *************** *** 291,292 **** ! chr2L_211022-247287 AUGUSTUS gene 1164 7861 0.95 - . g9 ! chr2L_211022-247287 AUGUSTUS transcript 1164 7861 0.95 - . g9.t1 --- 291,292 ---- ! chr2L_211022-247287 AUGUSTUS gene 1164 7861 0.89 - . g9 ! chr2L_211022-247287 AUGUSTUS transcript 1164 7861 0.89 - . g9.t1 *************** *** 295,296 **** ! chr2L_211022-247287 AUGUSTUS intron 4656 4751 0.99 - . transcript_id "g9.t1"; gene_id "g9"; ! chr2L_211022-247287 AUGUSTUS intron 4987 5055 0.99 - . transcript_id "g9.t1"; gene_id "g9"; --- 295,296 ---- ! chr2L_211022-247287 AUGUSTUS intron 4656 4751 1 - . transcript_id "g9.t1"; gene_id "g9"; ! chr2L_211022-247287 AUGUSTUS intron 4987 5055 0.97 - . transcript_id "g9.t1"; gene_id "g9"; *************** *** 298,299 **** ! chr2L_211022-247287 AUGUSTUS intron 5553 5610 1 - . transcript_id "g9.t1"; gene_id "g9"; ! chr2L_211022-247287 AUGUSTUS CDS 1164 3921 1 - 1 transcript_id "g9.t1"; gene_id "g9"; --- 298,299 ---- ! chr2L_211022-247287 AUGUSTUS intron 5553 5610 0.99 - . transcript_id "g9.t1"; gene_id "g9"; ! chr2L_211022-247287 AUGUSTUS CDS 1164 3921 0.99 - 1 transcript_id "g9.t1"; gene_id "g9"; *************** *** 301,302 **** ! chr2L_211022-247287 AUGUSTUS CDS 4752 4986 0.99 - 0 transcript_id "g9.t1"; gene_id "g9"; ! chr2L_211022-247287 AUGUSTUS CDS 5056 5254 0.99 - 1 transcript_id "g9.t1"; gene_id "g9"; --- 301,302 ---- ! chr2L_211022-247287 AUGUSTUS CDS 4752 4986 0.97 - 0 transcript_id "g9.t1"; gene_id "g9"; ! chr2L_211022-247287 AUGUSTUS CDS 5056 5254 1 - 1 transcript_id "g9.t1"; gene_id "g9"; *************** *** 304 **** ! chr2L_211022-247287 AUGUSTUS CDS 5611 7861 0.96 - 0 transcript_id "g9.t1"; gene_id "g9"; --- 304 ---- ! chr2L_211022-247287 AUGUSTUS CDS 5611 7861 0.93 - 0 transcript_id "g9.t1"; gene_id "g9"; *************** *** 331,332 **** ! chr2L_211022-247287 AUGUSTUS gene 15086 21150 0.14 - . g10 ! chr2L_211022-247287 AUGUSTUS transcript 15086 21150 0.14 - . g10.t1 --- 331,332 ---- ! chr2L_211022-247287 AUGUSTUS gene 15086 21150 0.16 - . g10 ! chr2L_211022-247287 AUGUSTUS transcript 15086 21150 0.16 - . g10.t1 *************** *** 336,340 **** ! chr2L_211022-247287 AUGUSTUS intron 18362 19516 0.62 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS intron 19607 19736 0.82 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS intron 20014 20941 0.97 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS intron 21081 21144 0.2 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 15086 15487 0.92 - 0 transcript_id "g10.t1"; gene_id "g10"; --- 336,340 ---- ! chr2L_211022-247287 AUGUSTUS intron 18362 19516 0.61 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS intron 19607 19736 0.83 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS intron 20014 20941 0.99 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS intron 21081 21144 0.29 - . transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 15086 15487 0.9 - 0 transcript_id "g10.t1"; gene_id "g10"; *************** *** 342,346 **** ! chr2L_211022-247287 AUGUSTUS CDS 18152 18361 0.71 - 1 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 19517 19606 0.76 - 1 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 19737 20013 0.91 - 2 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 20942 21080 0.55 - 0 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 21145 21150 0.23 - 0 transcript_id "g10.t1"; gene_id "g10"; --- 342,346 ---- ! chr2L_211022-247287 AUGUSTUS CDS 18152 18361 0.7 - 1 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 19517 19606 0.78 - 1 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 19737 20013 0.94 - 2 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 20942 21080 0.58 - 0 transcript_id "g10.t1"; gene_id "g10"; ! chr2L_211022-247287 AUGUSTUS CDS 21145 21150 0.34 - 0 transcript_id "g10.t1"; gene_id "g10"; *************** *** 359,360 **** ! chr2L_211022-247287 AUGUSTUS gene 21551 22944 0.97 + . g11 ! chr2L_211022-247287 AUGUSTUS transcript 21551 22944 0.97 + . g11.t1 --- 359,360 ---- ! chr2L_211022-247287 AUGUSTUS gene 21551 22944 0.92 + . g11 ! chr2L_211022-247287 AUGUSTUS transcript 21551 22944 0.92 + . g11.t1 *************** *** 363 **** ! chr2L_211022-247287 AUGUSTUS CDS 21551 22133 0.97 + 0 transcript_id "g11.t1"; gene_id "g11"; --- 363 ---- ! chr2L_211022-247287 AUGUSTUS CDS 21551 22133 0.92 + 0 transcript_id "g11.t1"; gene_id "g11"; *************** *** 374,375 **** ! chr2L_211022-247287 AUGUSTUS gene 22972 32911 0.61 - . g12 ! chr2L_211022-247287 AUGUSTUS transcript 22972 32911 0.61 - . g12.t1 --- 374,375 ---- ! chr2L_211022-247287 AUGUSTUS gene 22972 32911 0.57 - . g12 ! chr2L_211022-247287 AUGUSTUS transcript 22972 32911 0.57 - . g12.t1 *************** *** 380 **** ! chr2L_211022-247287 AUGUSTUS CDS 23216 31122 0.62 - 1 transcript_id "g12.t1"; gene_id "g12"; --- 380 ---- ! chr2L_211022-247287 AUGUSTUS CDS 23216 31122 0.58 - 1 transcript_id "g12.t1"; gene_id "g12"; *************** *** 425,426 **** ! chr2L_270315-274799 AUGUSTUS gene 1 1000 0.99 + . g13 ! chr2L_270315-274799 AUGUSTUS transcript 1 1000 0.99 + . g13.t1 --- 425,426 ---- ! chr2L_270315-274799 AUGUSTUS gene 1 1000 0.97 + . g13 ! chr2L_270315-274799 AUGUSTUS transcript 1 1000 0.97 + . g13.t1 *************** *** 428 **** ! chr2L_270315-274799 AUGUSTUS CDS 1 292 0.99 + 1 transcript_id "g13.t1"; gene_id "g13"; --- 428 ---- ! chr2L_270315-274799 AUGUSTUS CDS 1 292 0.97 + 1 transcript_id "g13.t1"; gene_id "g13"; *************** *** 438,439 **** ! chr2L_270315-274799 AUGUSTUS gene 1653 3320 0.57 - . g14 ! chr2L_270315-274799 AUGUSTUS transcript 1653 3320 0.57 - . g14.t1 --- 438,439 ---- ! chr2L_270315-274799 AUGUSTUS gene 1653 3320 0.46 - . g14 ! chr2L_270315-274799 AUGUSTUS transcript 1653 3320 0.46 - . g14.t1 *************** *** 441,443 **** ! chr2L_270315-274799 AUGUSTUS intron 2193 2240 0.72 - . transcript_id "g14.t1"; gene_id "g14"; ! chr2L_270315-274799 AUGUSTUS CDS 1653 2192 0.57 - 0 transcript_id "g14.t1"; gene_id "g14"; ! chr2L_270315-274799 AUGUSTUS CDS 2241 3320 0.99 - 0 transcript_id "g14.t1"; gene_id "g14"; --- 441,443 ---- ! chr2L_270315-274799 AUGUSTUS intron 2193 2240 0.71 - . transcript_id "g14.t1"; gene_id "g14"; ! chr2L_270315-274799 AUGUSTUS CDS 1653 2192 0.47 - 0 transcript_id "g14.t1"; gene_id "g14"; ! chr2L_270315-274799 AUGUSTUS CDS 2241 3320 0.98 - 0 transcript_id "g14.t1"; gene_id "g14"; *************** *** 454,455 **** ! chr2L_270315-274799 AUGUSTUS gene 3672 4337 0.36 + . g15 ! chr2L_270315-274799 AUGUSTUS transcript 3672 4337 0.36 + . g15.t1 --- 454,455 ---- ! chr2L_270315-274799 AUGUSTUS gene 3672 4337 0.41 + . g15 ! chr2L_270315-274799 AUGUSTUS transcript 3672 4337 0.41 + . g15.t1 *************** *** 457 **** ! chr2L_270315-274799 AUGUSTUS CDS 3672 4337 0.36 + 0 transcript_id "g15.t1"; gene_id "g15"; --- 457 ---- ! chr2L_270315-274799 AUGUSTUS CDS 3672 4337 0.41 + 0 transcript_id "g15.t1"; gene_id "g15"; *************** *** 481,482 **** ! chr2L_274800-277496 AUGUSTUS gene 148 2343 0.53 - . g16 ! chr2L_274800-277496 AUGUSTUS transcript 148 2343 0.53 - . g16.t1 --- 481,482 ---- ! chr2L_274800-277496 AUGUSTUS gene 148 2343 0.55 - . g16 ! chr2L_274800-277496 AUGUSTUS transcript 148 2343 0.55 - . g16.t1 *************** *** 486 **** ! chr2L_274800-277496 AUGUSTUS intron 2105 2159 0.54 - . transcript_id "g16.t1"; gene_id "g16"; --- 486 ---- ! chr2L_274800-277496 AUGUSTUS intron 2105 2159 0.55 - . transcript_id "g16.t1"; gene_id "g16"; *************** *** 490 **** ! chr2L_274800-277496 AUGUSTUS CDS 2160 2343 0.54 - 0 transcript_id "g16.t1"; gene_id "g16"; --- 490 ---- ! chr2L_274800-277496 AUGUSTUS CDS 2160 2343 0.55 - 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 514,517 **** ! chr2L_290745-293312 AUGUSTUS gene 1 266 0.97 - . g17 ! chr2L_290745-293312 AUGUSTUS transcript 1 266 0.97 - . g17.t1 ! chr2L_290745-293312 AUGUSTUS intron 1 68 0.97 - . transcript_id "g17.t1"; gene_id "g17"; ! chr2L_290745-293312 AUGUSTUS CDS 69 266 0.97 - 0 transcript_id "g17.t1"; gene_id "g17"; --- 514,517 ---- ! chr2L_290745-293312 AUGUSTUS gene 1 266 0.93 - . g17 ! chr2L_290745-293312 AUGUSTUS transcript 1 266 0.93 - . g17.t1 ! chr2L_290745-293312 AUGUSTUS intron 1 68 0.93 - . transcript_id "g17.t1"; gene_id "g17"; ! chr2L_290745-293312 AUGUSTUS CDS 69 266 0.93 - 0 transcript_id "g17.t1"; gene_id "g17"; *************** *** 523,524 **** ! chr2L_290745-293312 AUGUSTUS gene 1825 2258 0.98 + . g18 ! chr2L_290745-293312 AUGUSTUS transcript 1825 2258 0.98 + . g18.t1 --- 523,524 ---- ! chr2L_290745-293312 AUGUSTUS gene 1825 2258 0.96 + . g18 ! chr2L_290745-293312 AUGUSTUS transcript 1825 2258 0.96 + . g18.t1 *************** *** 526,527 **** ! chr2L_290745-293312 AUGUSTUS intron 1917 1972 0.98 + . transcript_id "g18.t1"; gene_id "g18"; ! chr2L_290745-293312 AUGUSTUS CDS 1825 1916 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; --- 526,527 ---- ! chr2L_290745-293312 AUGUSTUS intron 1917 1972 0.96 + . transcript_id "g18.t1"; gene_id "g18"; ! chr2L_290745-293312 AUGUSTUS CDS 1825 1916 0.96 + 0 transcript_id "g18.t1"; gene_id "g18"; *************** *** 545,546 **** ! chr2L_319811-321676 AUGUSTUS gene 578 1411 0.92 - . g19 ! chr2L_319811-321676 AUGUSTUS transcript 578 1411 0.92 - . g19.t1 --- 545,546 ---- ! chr2L_319811-321676 AUGUSTUS gene 578 1411 0.96 - . g19 ! chr2L_319811-321676 AUGUSTUS transcript 578 1411 0.96 - . g19.t1 *************** *** 548 **** ! chr2L_319811-321676 AUGUSTUS CDS 578 1411 0.92 - 0 transcript_id "g19.t1"; gene_id "g19"; --- 548 ---- ! chr2L_319811-321676 AUGUSTUS CDS 578 1411 0.96 - 0 transcript_id "g19.t1"; gene_id "g19"; *************** *** 581,582 **** ! chr2L_408642-414424 AUGUSTUS gene 747 4818 0.96 - . g20 ! chr2L_408642-414424 AUGUSTUS transcript 747 4818 0.96 - . g20.t1 --- 581,582 ---- ! chr2L_408642-414424 AUGUSTUS gene 747 4818 0.95 - . g20 ! chr2L_408642-414424 AUGUSTUS transcript 747 4818 0.95 - . g20.t1 *************** *** 584 **** ! chr2L_408642-414424 AUGUSTUS intron 825 890 0.97 - . transcript_id "g20.t1"; gene_id "g20"; --- 584 ---- ! chr2L_408642-414424 AUGUSTUS intron 825 890 0.96 - . transcript_id "g20.t1"; gene_id "g20"; *************** *** 590,591 **** ! chr2L_408642-414424 AUGUSTUS intron 4018 4754 0.99 - . transcript_id "g20.t1"; gene_id "g20"; ! chr2L_408642-414424 AUGUSTUS CDS 747 824 0.97 - 0 transcript_id "g20.t1"; gene_id "g20"; --- 590,591 ---- ! chr2L_408642-414424 AUGUSTUS intron 4018 4754 1 - . transcript_id "g20.t1"; gene_id "g20"; ! chr2L_408642-414424 AUGUSTUS CDS 747 824 0.96 - 0 transcript_id "g20.t1"; gene_id "g20"; *************** *** 597 **** ! chr2L_408642-414424 AUGUSTUS CDS 3806 4017 0.99 - 2 transcript_id "g20.t1"; gene_id "g20"; --- 597 ---- ! chr2L_408642-414424 AUGUSTUS CDS 3806 4017 1 - 2 transcript_id "g20.t1"; gene_id "g20"; *************** *** 625,626 **** ! chr2L_476395-484475 AUGUSTUS gene 593 3081 0.55 - . g21 ! chr2L_476395-484475 AUGUSTUS transcript 593 3081 0.55 - . g21.t1 --- 625,626 ---- ! chr2L_476395-484475 AUGUSTUS gene 593 3081 0.52 - . g21 ! chr2L_476395-484475 AUGUSTUS transcript 593 3081 0.52 - . g21.t1 *************** *** 628 **** ! chr2L_476395-484475 AUGUSTUS intron 1811 3012 0.72 - . transcript_id "g21.t1"; gene_id "g21"; --- 628 ---- ! chr2L_476395-484475 AUGUSTUS intron 1811 3012 0.85 - . transcript_id "g21.t1"; gene_id "g21"; *************** *** 630 **** ! chr2L_476395-484475 AUGUSTUS CDS 3013 3081 0.55 - 0 transcript_id "g21.t1"; gene_id "g21"; --- 630 ---- ! chr2L_476395-484475 AUGUSTUS CDS 3013 3081 0.52 - 0 transcript_id "g21.t1"; gene_id "g21"; *************** *** 650,651 **** ! chr2L_700859-712727 AUGUSTUS gene 5001 6869 0.44 - . g22 ! chr2L_700859-712727 AUGUSTUS transcript 5001 6869 0.44 - . g22.t1 --- 650,651 ---- ! chr2L_700859-712727 AUGUSTUS gene 5001 6869 0.47 - . g22 ! chr2L_700859-712727 AUGUSTUS transcript 5001 6869 0.47 - . g22.t1 *************** *** 653 **** ! chr2L_700859-712727 AUGUSTUS CDS 5001 6869 0.44 - 0 transcript_id "g22.t1"; gene_id "g22"; --- 653 ---- ! chr2L_700859-712727 AUGUSTUS CDS 5001 6869 0.47 - 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 685,688 **** ! chr2L_733074-745995 AUGUSTUS gene 1 1053 0.77 + . g23 ! chr2L_733074-745995 AUGUSTUS transcript 1 1053 0.77 + . g23.t1 ! chr2L_733074-745995 AUGUSTUS intron 1 886 0.77 + . transcript_id "g23.t1"; gene_id "g23"; ! chr2L_733074-745995 AUGUSTUS CDS 887 1053 0.78 + 2 transcript_id "g23.t1"; gene_id "g23"; --- 685,688 ---- ! chr2L_733074-745995 AUGUSTUS gene 1 1053 0.79 + . g23 ! chr2L_733074-745995 AUGUSTUS transcript 1 1053 0.79 + . g23.t1 ! chr2L_733074-745995 AUGUSTUS intron 1 886 0.79 + . transcript_id "g23.t1"; gene_id "g23"; ! chr2L_733074-745995 AUGUSTUS CDS 887 1053 0.8 + 2 transcript_id "g23.t1"; gene_id "g23"; *************** *** 694,695 **** ! chr2L_733074-745995 AUGUSTUS gene 5001 7874 0.91 - . g24 ! chr2L_733074-745995 AUGUSTUS transcript 5001 7874 0.91 - . g24.t1 --- 694,695 ---- ! chr2L_733074-745995 AUGUSTUS gene 5001 7874 0.89 - . g24 ! chr2L_733074-745995 AUGUSTUS transcript 5001 7874 0.89 - . g24.t1 *************** *** 698 **** ! chr2L_733074-745995 AUGUSTUS intron 5363 5434 0.96 - . transcript_id "g24.t1"; gene_id "g24"; --- 698 ---- ! chr2L_733074-745995 AUGUSTUS intron 5363 5434 0.98 - . transcript_id "g24.t1"; gene_id "g24"; *************** *** 707 **** ! chr2L_733074-745995 AUGUSTUS CDS 7727 7874 1 - 0 transcript_id "g24.t1"; gene_id "g24"; --- 707 ---- ! chr2L_733074-745995 AUGUSTUS CDS 7727 7874 0.98 - 0 transcript_id "g24.t1"; gene_id "g24"; *************** *** 748,749 **** ! chr2L_774204-784563 AUGUSTUS gene 7073 8621 0.69 + . g27 ! chr2L_774204-784563 AUGUSTUS transcript 7073 8621 0.69 + . g27.t1 --- 748,749 ---- ! chr2L_774204-784563 AUGUSTUS gene 7073 8621 0.71 + . g27 ! chr2L_774204-784563 AUGUSTUS transcript 7073 8621 0.71 + . g27.t1 *************** *** 751,752 **** ! chr2L_774204-784563 AUGUSTUS intron 7846 7920 0.99 + . transcript_id "g27.t1"; gene_id "g27"; ! chr2L_774204-784563 AUGUSTUS intron 7979 8034 0.99 + . transcript_id "g27.t1"; gene_id "g27"; --- 751,752 ---- ! chr2L_774204-784563 AUGUSTUS intron 7846 7920 0.98 + . transcript_id "g27.t1"; gene_id "g27"; ! chr2L_774204-784563 AUGUSTUS intron 7979 8034 1 + . transcript_id "g27.t1"; gene_id "g27"; *************** *** 754,756 **** ! chr2L_774204-784563 AUGUSTUS CDS 7073 7845 0.69 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chr2L_774204-784563 AUGUSTUS CDS 7921 7978 0.99 + 1 transcript_id "g27.t1"; gene_id "g27"; ! chr2L_774204-784563 AUGUSTUS CDS 8035 8238 0.99 + 0 transcript_id "g27.t1"; gene_id "g27"; --- 754,756 ---- ! chr2L_774204-784563 AUGUSTUS CDS 7073 7845 0.71 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chr2L_774204-784563 AUGUSTUS CDS 7921 7978 0.98 + 1 transcript_id "g27.t1"; gene_id "g27"; ! chr2L_774204-784563 AUGUSTUS CDS 8035 8238 1 + 0 transcript_id "g27.t1"; gene_id "g27"; *************** *** 779,780 **** ! chr2L_811535-814697 AUGUSTUS gene 102 1777 0.9 + . g28 ! chr2L_811535-814697 AUGUSTUS transcript 102 1777 0.9 + . g28.t1 --- 779,780 ---- ! chr2L_811535-814697 AUGUSTUS gene 102 1777 0.98 + . g28 ! chr2L_811535-814697 AUGUSTUS transcript 102 1777 0.98 + . g28.t1 *************** *** 782,784 **** ! chr2L_811535-814697 AUGUSTUS intron 963 1027 0.91 + . transcript_id "g28.t1"; gene_id "g28"; ! chr2L_811535-814697 AUGUSTUS CDS 102 962 0.94 + 0 transcript_id "g28.t1"; gene_id "g28"; ! chr2L_811535-814697 AUGUSTUS CDS 1028 1777 0.93 + 0 transcript_id "g28.t1"; gene_id "g28"; --- 782,784 ---- ! chr2L_811535-814697 AUGUSTUS intron 963 1027 0.98 + . transcript_id "g28.t1"; gene_id "g28"; ! chr2L_811535-814697 AUGUSTUS CDS 102 962 0.99 + 0 transcript_id "g28.t1"; gene_id "g28"; ! chr2L_811535-814697 AUGUSTUS CDS 1028 1777 0.98 + 0 transcript_id "g28.t1"; gene_id "g28"; *************** *** 795,796 **** ! chr2L_811535-814697 AUGUSTUS gene 1923 3075 0.39 - . g29 ! chr2L_811535-814697 AUGUSTUS transcript 1923 3075 0.39 - . g29.t1 --- 795,796 ---- ! chr2L_811535-814697 AUGUSTUS gene 1923 3075 0.3 - . g29 ! chr2L_811535-814697 AUGUSTUS transcript 1923 3075 0.3 - . g29.t1 *************** *** 799 **** ! chr2L_811535-814697 AUGUSTUS intron 2651 2708 0.4 - . transcript_id "g29.t1"; gene_id "g29"; --- 799 ---- ! chr2L_811535-814697 AUGUSTUS intron 2651 2708 0.3 - . transcript_id "g29.t1"; gene_id "g29"; *************** *** 801,802 **** ! chr2L_811535-814697 AUGUSTUS CDS 2417 2650 0.4 - 2 transcript_id "g29.t1"; gene_id "g29"; ! chr2L_811535-814697 AUGUSTUS CDS 2709 3075 0.49 - 0 transcript_id "g29.t1"; gene_id "g29"; --- 801,802 ---- ! chr2L_811535-814697 AUGUSTUS CDS 2417 2650 0.31 - 2 transcript_id "g29.t1"; gene_id "g29"; ! chr2L_811535-814697 AUGUSTUS CDS 2709 3075 0.53 - 0 transcript_id "g29.t1"; gene_id "g29"; *************** *** 823,824 **** ! chr2L_817742-819706 AUGUSTUS gene 766 1593 0.74 - . g30 ! chr2L_817742-819706 AUGUSTUS transcript 766 1593 0.74 - . g30.t1 --- 823,824 ---- ! chr2L_817742-819706 AUGUSTUS gene 766 1593 0.69 - . g30 ! chr2L_817742-819706 AUGUSTUS transcript 766 1593 0.69 - . g30.t1 *************** *** 826,828 **** ! chr2L_817742-819706 AUGUSTUS intron 903 962 0.74 - . transcript_id "g30.t1"; gene_id "g30"; ! chr2L_817742-819706 AUGUSTUS CDS 766 902 0.74 - 2 transcript_id "g30.t1"; gene_id "g30"; ! chr2L_817742-819706 AUGUSTUS CDS 963 1593 0.74 - 0 transcript_id "g30.t1"; gene_id "g30"; --- 826,828 ---- ! chr2L_817742-819706 AUGUSTUS intron 903 962 0.7 - . transcript_id "g30.t1"; gene_id "g30"; ! chr2L_817742-819706 AUGUSTUS CDS 766 902 0.69 - 2 transcript_id "g30.t1"; gene_id "g30"; ! chr2L_817742-819706 AUGUSTUS CDS 963 1593 0.7 - 0 transcript_id "g30.t1"; gene_id "g30"; *************** *** 846,849 **** ! chr2L_829735-838904 AUGUSTUS gene 1 2189 0.81 + . g31 ! chr2L_829735-838904 AUGUSTUS transcript 1 2189 0.81 + . g31.t1 ! chr2L_829735-838904 AUGUSTUS intron 238 410 0.82 + . transcript_id "g31.t1"; gene_id "g31"; ! chr2L_829735-838904 AUGUSTUS intron 616 1003 0.99 + . transcript_id "g31.t1"; gene_id "g31"; --- 846,849 ---- ! chr2L_829735-838904 AUGUSTUS gene 1 2189 0.73 + . g31 ! chr2L_829735-838904 AUGUSTUS transcript 1 2189 0.73 + . g31.t1 ! chr2L_829735-838904 AUGUSTUS intron 238 410 0.73 + . transcript_id "g31.t1"; gene_id "g31"; ! chr2L_829735-838904 AUGUSTUS intron 616 1003 1 + . transcript_id "g31.t1"; gene_id "g31"; *************** *** 852,853 **** ! chr2L_829735-838904 AUGUSTUS CDS 1 237 0.82 + 2 transcript_id "g31.t1"; gene_id "g31"; ! chr2L_829735-838904 AUGUSTUS CDS 411 615 0.99 + 2 transcript_id "g31.t1"; gene_id "g31"; --- 852,853 ---- ! chr2L_829735-838904 AUGUSTUS CDS 1 237 0.73 + 2 transcript_id "g31.t1"; gene_id "g31"; ! chr2L_829735-838904 AUGUSTUS CDS 411 615 1 + 2 transcript_id "g31.t1"; gene_id "g31"; *************** *** 867,868 **** ! chr2L_829735-838904 AUGUSTUS gene 4811 9170 0.69 - . g32 ! chr2L_829735-838904 AUGUSTUS transcript 4811 9170 0.69 - . g32.t1 --- 867,868 ---- ! chr2L_829735-838904 AUGUSTUS gene 4811 9170 0.73 - . g32 ! chr2L_829735-838904 AUGUSTUS transcript 4811 9170 0.73 - . g32.t1 *************** *** 870 **** ! chr2L_829735-838904 AUGUSTUS intron 4850 5239 0.84 - . transcript_id "g32.t1"; gene_id "g32"; --- 870 ---- ! chr2L_829735-838904 AUGUSTUS intron 4850 5239 0.85 - . transcript_id "g32.t1"; gene_id "g32"; *************** *** 874,876 **** ! chr2L_829735-838904 AUGUSTUS intron 7645 9170 0.85 - . transcript_id "g32.t1"; gene_id "g32"; ! chr2L_829735-838904 AUGUSTUS CDS 4811 4849 0.84 - 0 transcript_id "g32.t1"; gene_id "g32"; ! chr2L_829735-838904 AUGUSTUS CDS 5240 5556 0.96 - 2 transcript_id "g32.t1"; gene_id "g32"; --- 874,876 ---- ! chr2L_829735-838904 AUGUSTUS intron 7645 9170 0.86 - . transcript_id "g32.t1"; gene_id "g32"; ! chr2L_829735-838904 AUGUSTUS CDS 4811 4849 0.85 - 0 transcript_id "g32.t1"; gene_id "g32"; ! chr2L_829735-838904 AUGUSTUS CDS 5240 5556 0.97 - 2 transcript_id "g32.t1"; gene_id "g32"; *************** *** 879 **** ! chr2L_829735-838904 AUGUSTUS CDS 6812 7644 0.86 - 1 transcript_id "g32.t1"; gene_id "g32"; --- 879 ---- ! chr2L_829735-838904 AUGUSTUS CDS 6812 7644 0.87 - 1 transcript_id "g32.t1"; gene_id "g32"; *************** *** 911,913 **** ! chr2L_1037923-1047607 AUGUSTUS gene 1 500 1 + . g33 ! chr2L_1037923-1047607 AUGUSTUS transcript 1 500 1 + . g33.t1 ! chr2L_1037923-1047607 AUGUSTUS CDS 1 500 1 + 2 transcript_id "g33.t1"; gene_id "g33"; --- 911,913 ---- ! chr2L_1037923-1047607 AUGUSTUS gene 1 500 0.98 + . g33 ! chr2L_1037923-1047607 AUGUSTUS transcript 1 500 0.98 + . g33.t1 ! chr2L_1037923-1047607 AUGUSTUS CDS 1 500 0.98 + 2 transcript_id "g33.t1"; gene_id "g33"; *************** *** 938,939 **** ! chr2L_1080978-1087871 AUGUSTUS gene 267 1894 0.85 + . g34 ! chr2L_1080978-1087871 AUGUSTUS transcript 267 1894 0.85 + . g34.t1 --- 938,939 ---- ! chr2L_1080978-1087871 AUGUSTUS gene 267 1894 0.92 + . g34 ! chr2L_1080978-1087871 AUGUSTUS transcript 267 1894 0.92 + . g34.t1 *************** *** 944,945 **** ! chr2L_1080978-1087871 AUGUSTUS intron 1689 1811 0.97 + . transcript_id "g34.t1"; gene_id "g34"; ! chr2L_1080978-1087871 AUGUSTUS CDS 267 450 0.88 + 0 transcript_id "g34.t1"; gene_id "g34"; --- 944,945 ---- ! chr2L_1080978-1087871 AUGUSTUS intron 1689 1811 1 + . transcript_id "g34.t1"; gene_id "g34"; ! chr2L_1080978-1087871 AUGUSTUS CDS 267 450 0.92 + 0 transcript_id "g34.t1"; gene_id "g34"; *************** *** 948,949 **** ! chr2L_1080978-1087871 AUGUSTUS CDS 1143 1688 0.98 + 2 transcript_id "g34.t1"; gene_id "g34"; ! chr2L_1080978-1087871 AUGUSTUS CDS 1812 1894 0.97 + 2 transcript_id "g34.t1"; gene_id "g34"; --- 948,949 ---- ! chr2L_1080978-1087871 AUGUSTUS CDS 1143 1688 1 + 2 transcript_id "g34.t1"; gene_id "g34"; ! chr2L_1080978-1087871 AUGUSTUS CDS 1812 1894 1 + 2 transcript_id "g34.t1"; gene_id "g34"; *************** *** 959,960 **** ! chr2L_1080978-1087871 AUGUSTUS gene 3042 6894 0.6 - . g35 ! chr2L_1080978-1087871 AUGUSTUS transcript 3042 6894 0.6 - . g35.t1 --- 959,960 ---- ! chr2L_1080978-1087871 AUGUSTUS gene 3042 6894 0.61 - . g35 ! chr2L_1080978-1087871 AUGUSTUS transcript 3042 6894 0.61 - . g35.t1 *************** *** 963 **** ! chr2L_1080978-1087871 AUGUSTUS intron 4160 4217 0.63 - . transcript_id "g35.t1"; gene_id "g35"; --- 963 ---- ! chr2L_1080978-1087871 AUGUSTUS intron 4160 4217 0.61 - . transcript_id "g35.t1"; gene_id "g35"; *************** *** 966 **** ! chr2L_1080978-1087871 AUGUSTUS intron 4885 4949 0.96 - . transcript_id "g35.t1"; gene_id "g35"; --- 966 ---- ! chr2L_1080978-1087871 AUGUSTUS intron 4885 4949 0.98 - . transcript_id "g35.t1"; gene_id "g35"; *************** *** 970 **** ! chr2L_1080978-1087871 AUGUSTUS CDS 4218 4332 0.63 - 0 transcript_id "g35.t1"; gene_id "g35"; --- 970 ---- ! chr2L_1080978-1087871 AUGUSTUS CDS 4218 4332 0.61 - 0 transcript_id "g35.t1"; gene_id "g35"; *************** *** 973 **** ! chr2L_1080978-1087871 AUGUSTUS CDS 4950 5049 0.96 - 0 transcript_id "g35.t1"; gene_id "g35"; --- 973 ---- ! chr2L_1080978-1087871 AUGUSTUS CDS 4950 5049 0.98 - 0 transcript_id "g35.t1"; gene_id "g35"; *************** *** 997 **** ! chr2L_1111430-1120120 AUGUSTUS intron 1 76 0.81 + . transcript_id "g36.t1"; gene_id "g36"; --- 997 ---- ! chr2L_1111430-1120120 AUGUSTUS intron 1 76 0.85 + . transcript_id "g36.t1"; gene_id "g36"; *************** *** 1000 **** ! chr2L_1111430-1120120 AUGUSTUS intron 1176 1774 0.67 + . transcript_id "g36.t1"; gene_id "g36"; --- 1000 ---- ! chr2L_1111430-1120120 AUGUSTUS intron 1176 1774 0.76 + . transcript_id "g36.t1"; gene_id "g36"; *************** *** 1002 **** ! chr2L_1111430-1120120 AUGUSTUS CDS 77 538 0.81 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1002 ---- ! chr2L_1111430-1120120 AUGUSTUS CDS 77 538 0.85 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1004 **** ! chr2L_1111430-1120120 AUGUSTUS CDS 1077 1175 0.67 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1004 ---- ! chr2L_1111430-1120120 AUGUSTUS CDS 1077 1175 0.76 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1006 **** ! chr2L_1111430-1120120 AUGUSTUS CDS 2130 2353 0.48 + 2 transcript_id "g36.t1"; gene_id "g36"; --- 1006 ---- ! chr2L_1111430-1120120 AUGUSTUS CDS 2130 2353 0.41 + 2 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1021 **** ! chr2L_1111430-1120120 AUGUSTUS intron 5262 6014 0.92 - . transcript_id "g37.t1"; gene_id "g37"; --- 1021 ---- ! chr2L_1111430-1120120 AUGUSTUS intron 5262 6014 0.91 - . transcript_id "g37.t1"; gene_id "g37"; *************** *** 1023,1024 **** ! chr2L_1111430-1120120 AUGUSTUS CDS 5012 5261 1 - 1 transcript_id "g37.t1"; gene_id "g37"; ! chr2L_1111430-1120120 AUGUSTUS CDS 6015 6070 0.91 - 0 transcript_id "g37.t1"; gene_id "g37"; --- 1023,1024 ---- ! chr2L_1111430-1120120 AUGUSTUS CDS 5012 5261 0.99 - 1 transcript_id "g37.t1"; gene_id "g37"; ! chr2L_1111430-1120120 AUGUSTUS CDS 6015 6070 0.92 - 0 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1041,1042 **** ! chr2L_1142814-1149445 AUGUSTUS gene 558 4262 0.56 + . g38 ! chr2L_1142814-1149445 AUGUSTUS transcript 558 4262 0.56 + . g38.t1 --- 1041,1042 ---- ! chr2L_1142814-1149445 AUGUSTUS gene 558 4262 0.58 + . g38 ! chr2L_1142814-1149445 AUGUSTUS transcript 558 4262 0.58 + . g38.t1 *************** *** 1047,1048 **** ! chr2L_1142814-1149445 AUGUSTUS CDS 558 597 0.63 + 0 transcript_id "g38.t1"; gene_id "g38"; ! chr2L_1142814-1149445 AUGUSTUS CDS 2631 3659 0.9 + 2 transcript_id "g38.t1"; gene_id "g38"; --- 1047,1048 ---- ! chr2L_1142814-1149445 AUGUSTUS CDS 558 597 0.61 + 0 transcript_id "g38.t1"; gene_id "g38"; ! chr2L_1142814-1149445 AUGUSTUS CDS 2631 3659 0.94 + 2 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1091,1092 **** ! chr2L_1167203-1170009 AUGUSTUS gene 41 2583 0.97 - . g40 ! chr2L_1167203-1170009 AUGUSTUS transcript 41 2583 0.97 - . g40.t1 --- 1091,1092 ---- ! chr2L_1167203-1170009 AUGUSTUS gene 41 2583 0.95 - . g40 ! chr2L_1167203-1170009 AUGUSTUS transcript 41 2583 0.95 - . g40.t1 *************** *** 1095 **** ! chr2L_1167203-1170009 AUGUSTUS intron 1437 1492 0.99 - . transcript_id "g40.t1"; gene_id "g40"; --- 1095 ---- ! chr2L_1167203-1170009 AUGUSTUS intron 1437 1492 0.98 - . transcript_id "g40.t1"; gene_id "g40"; *************** *** 1097,1100 **** ! chr2L_1167203-1170009 AUGUSTUS CDS 41 752 0.98 - 1 transcript_id "g40.t1"; gene_id "g40"; ! chr2L_1167203-1170009 AUGUSTUS CDS 810 1436 0.99 - 1 transcript_id "g40.t1"; gene_id "g40"; ! chr2L_1167203-1170009 AUGUSTUS CDS 1493 2359 0.99 - 1 transcript_id "g40.t1"; gene_id "g40"; ! chr2L_1167203-1170009 AUGUSTUS CDS 2426 2583 1 - 0 transcript_id "g40.t1"; gene_id "g40"; --- 1097,1100 ---- ! chr2L_1167203-1170009 AUGUSTUS CDS 41 752 0.99 - 1 transcript_id "g40.t1"; gene_id "g40"; ! chr2L_1167203-1170009 AUGUSTUS CDS 810 1436 0.98 - 1 transcript_id "g40.t1"; gene_id "g40"; ! chr2L_1167203-1170009 AUGUSTUS CDS 1493 2359 0.98 - 1 transcript_id "g40.t1"; gene_id "g40"; ! chr2L_1167203-1170009 AUGUSTUS CDS 2426 2583 0.98 - 0 transcript_id "g40.t1"; gene_id "g40"; *************** *** 1146,1147 **** ! chr2L_1175285-1182390 AUGUSTUS gene 1 2088 0.63 + . g41 ! chr2L_1175285-1182390 AUGUSTUS transcript 1 2088 0.63 + . g41.t1 --- 1146,1147 ---- ! chr2L_1175285-1182390 AUGUSTUS gene 1 2088 0.72 + . g41 ! chr2L_1175285-1182390 AUGUSTUS transcript 1 2088 0.72 + . g41.t1 *************** *** 1151,1152 **** ! chr2L_1175285-1182390 AUGUSTUS intron 1908 1971 0.9 + . transcript_id "g41.t1"; gene_id "g41"; ! chr2L_1175285-1182390 AUGUSTUS CDS 1 239 0.72 + 1 transcript_id "g41.t1"; gene_id "g41"; --- 1151,1152 ---- ! chr2L_1175285-1182390 AUGUSTUS intron 1908 1971 0.89 + . transcript_id "g41.t1"; gene_id "g41"; ! chr2L_1175285-1182390 AUGUSTUS CDS 1 239 0.81 + 1 transcript_id "g41.t1"; gene_id "g41"; *************** *** 1156 **** ! chr2L_1175285-1182390 AUGUSTUS CDS 1972 2088 0.9 + 0 transcript_id "g41.t1"; gene_id "g41"; --- 1156 ---- ! chr2L_1175285-1182390 AUGUSTUS CDS 1972 2088 0.89 + 0 transcript_id "g41.t1"; gene_id "g41"; *************** *** 1168,1169 **** ! chr2L_1175285-1182390 AUGUSTUS gene 2666 7002 0.43 + . g42 ! chr2L_1175285-1182390 AUGUSTUS transcript 2666 7002 0.43 + . g42.t1 --- 1168,1169 ---- ! chr2L_1175285-1182390 AUGUSTUS gene 2666 7002 0.37 + . g42 ! chr2L_1175285-1182390 AUGUSTUS transcript 2666 7002 0.37 + . g42.t1 *************** *** 1173,1174 **** ! chr2L_1175285-1182390 AUGUSTUS intron 3786 3842 0.99 + . transcript_id "g42.t1"; gene_id "g42"; ! chr2L_1175285-1182390 AUGUSTUS intron 3913 4928 0.43 + . transcript_id "g42.t1"; gene_id "g42"; --- 1173,1174 ---- ! chr2L_1175285-1182390 AUGUSTUS intron 3786 3842 1 + . transcript_id "g42.t1"; gene_id "g42"; ! chr2L_1175285-1182390 AUGUSTUS intron 3913 4928 0.37 + . transcript_id "g42.t1"; gene_id "g42"; *************** *** 1182,1183 **** ! chr2L_1175285-1182390 AUGUSTUS CDS 3843 3912 0.95 + 0 transcript_id "g42.t1"; gene_id "g42"; ! chr2L_1175285-1182390 AUGUSTUS CDS 4929 5165 0.99 + 2 transcript_id "g42.t1"; gene_id "g42"; --- 1182,1183 ---- ! chr2L_1175285-1182390 AUGUSTUS CDS 3843 3912 0.94 + 0 transcript_id "g42.t1"; gene_id "g42"; ! chr2L_1175285-1182390 AUGUSTUS CDS 4929 5165 1 + 2 transcript_id "g42.t1"; gene_id "g42"; *************** *** 1213,1214 **** ! chr2L_1235068-1247145 AUGUSTUS gene 5001 7078 0.99 + . g43 ! chr2L_1235068-1247145 AUGUSTUS transcript 5001 7078 0.99 + . g43.t1 --- 1213,1214 ---- ! chr2L_1235068-1247145 AUGUSTUS gene 5001 7078 1 + . g43 ! chr2L_1235068-1247145 AUGUSTUS transcript 5001 7078 1 + . g43.t1 *************** *** 1218 **** ! chr2L_1235068-1247145 AUGUSTUS CDS 5984 7078 0.99 + 0 transcript_id "g43.t1"; gene_id "g43"; --- 1218 ---- ! chr2L_1235068-1247145 AUGUSTUS CDS 5984 7078 1 + 0 transcript_id "g43.t1"; gene_id "g43"; *************** *** 1250,1252 **** ! chr2L_1355147-1366657 AUGUSTUS gene 1 4484 0.46 - . g44 ! chr2L_1355147-1366657 AUGUSTUS transcript 1 4484 0.46 - . g44.t1 ! chr2L_1355147-1366657 AUGUSTUS intron 484 4025 0.59 - . transcript_id "g44.t1"; gene_id "g44"; --- 1250,1252 ---- ! chr2L_1355147-1366657 AUGUSTUS gene 1 4484 0.44 - . g44 ! chr2L_1355147-1366657 AUGUSTUS transcript 1 4484 0.44 - . g44.t1 ! chr2L_1355147-1366657 AUGUSTUS intron 484 4025 0.61 - . transcript_id "g44.t1"; gene_id "g44"; *************** *** 1254 **** ! chr2L_1355147-1366657 AUGUSTUS intron 4272 4320 0.95 - . transcript_id "g44.t1"; gene_id "g44"; --- 1254 ---- ! chr2L_1355147-1366657 AUGUSTUS intron 4272 4320 0.99 - . transcript_id "g44.t1"; gene_id "g44"; *************** *** 1256,1258 **** ! chr2L_1355147-1366657 AUGUSTUS CDS 4026 4124 0.64 - 2 transcript_id "g44.t1"; gene_id "g44"; ! chr2L_1355147-1366657 AUGUSTUS CDS 4186 4271 0.95 - 1 transcript_id "g44.t1"; gene_id "g44"; ! chr2L_1355147-1366657 AUGUSTUS CDS 4321 4484 0.74 - 0 transcript_id "g44.t1"; gene_id "g44"; --- 1256,1258 ---- ! chr2L_1355147-1366657 AUGUSTUS CDS 4026 4124 0.63 - 2 transcript_id "g44.t1"; gene_id "g44"; ! chr2L_1355147-1366657 AUGUSTUS CDS 4186 4271 0.99 - 1 transcript_id "g44.t1"; gene_id "g44"; ! chr2L_1355147-1366657 AUGUSTUS CDS 4321 4484 0.73 - 0 transcript_id "g44.t1"; gene_id "g44"; *************** *** 1267,1268 **** ! chr2L_1355147-1366657 AUGUSTUS gene 5001 6511 0.98 - . g45 ! chr2L_1355147-1366657 AUGUSTUS transcript 5001 6511 0.98 - . g45.t1 --- 1267,1268 ---- ! chr2L_1355147-1366657 AUGUSTUS gene 5001 6511 0.97 - . g45 ! chr2L_1355147-1366657 AUGUSTUS transcript 5001 6511 0.97 - . g45.t1 *************** *** 1275 **** ! chr2L_1355147-1366657 AUGUSTUS CDS 5001 5227 1 - 2 transcript_id "g45.t1"; gene_id "g45"; --- 1275 ---- ! chr2L_1355147-1366657 AUGUSTUS CDS 5001 5227 0.99 - 2 transcript_id "g45.t1"; gene_id "g45"; *************** *** 1319,1320 **** ! chr2L_1711034-1716329 AUGUSTUS gene 719 4523 0.53 - . g47 ! chr2L_1711034-1716329 AUGUSTUS transcript 719 4523 0.53 - . g47.t1 --- 1319,1320 ---- ! chr2L_1711034-1716329 AUGUSTUS gene 719 4523 0.6 - . g47 ! chr2L_1711034-1716329 AUGUSTUS transcript 719 4523 0.6 - . g47.t1 *************** *** 1327 **** ! chr2L_1711034-1716329 AUGUSTUS intron 3496 4118 0.58 - . transcript_id "g47.t1"; gene_id "g47"; --- 1327 ---- ! chr2L_1711034-1716329 AUGUSTUS intron 3496 4118 0.64 - . transcript_id "g47.t1"; gene_id "g47"; *************** *** 1333,1334 **** ! chr2L_1711034-1716329 AUGUSTUS CDS 3140 3495 0.58 - 0 transcript_id "g47.t1"; gene_id "g47"; ! chr2L_1711034-1716329 AUGUSTUS CDS 4119 4523 0.62 - 0 transcript_id "g47.t1"; gene_id "g47"; --- 1333,1334 ---- ! chr2L_1711034-1716329 AUGUSTUS CDS 3140 3495 0.64 - 0 transcript_id "g47.t1"; gene_id "g47"; ! chr2L_1711034-1716329 AUGUSTUS CDS 4119 4523 0.65 - 0 transcript_id "g47.t1"; gene_id "g47"; *************** *** 1373,1374 **** ! chr2L_1730466-1736982 AUGUSTUS gene 938 1798 0.76 - . g49 ! chr2L_1730466-1736982 AUGUSTUS transcript 938 1798 0.76 - . g49.t1 --- 1373,1374 ---- ! chr2L_1730466-1736982 AUGUSTUS gene 938 1798 0.83 - . g49 ! chr2L_1730466-1736982 AUGUSTUS transcript 938 1798 0.83 - . g49.t1 *************** *** 1377 **** ! chr2L_1730466-1736982 AUGUSTUS intron 1616 1678 0.92 - . transcript_id "g49.t1"; gene_id "g49"; --- 1377 ---- ! chr2L_1730466-1736982 AUGUSTUS intron 1616 1678 0.97 - . transcript_id "g49.t1"; gene_id "g49"; *************** *** 1379,1380 **** ! chr2L_1730466-1736982 AUGUSTUS CDS 1415 1615 0.93 - 0 transcript_id "g49.t1"; gene_id "g49"; ! chr2L_1730466-1736982 AUGUSTUS CDS 1679 1798 0.83 - 0 transcript_id "g49.t1"; gene_id "g49"; --- 1379,1380 ---- ! chr2L_1730466-1736982 AUGUSTUS CDS 1415 1615 0.97 - 0 transcript_id "g49.t1"; gene_id "g49"; ! chr2L_1730466-1736982 AUGUSTUS CDS 1679 1798 0.85 - 0 transcript_id "g49.t1"; gene_id "g49"; *************** *** 1402,1403 **** ! chr2L_1980930-1982119 AUGUSTUS gene 363 998 0.76 + . g50 ! chr2L_1980930-1982119 AUGUSTUS transcript 363 998 0.76 + . g50.t1 --- 1402,1403 ---- ! chr2L_1980930-1982119 AUGUSTUS gene 363 998 0.85 + . g50 ! chr2L_1980930-1982119 AUGUSTUS transcript 363 998 0.85 + . g50.t1 *************** *** 1407 **** ! chr2L_1980930-1982119 AUGUSTUS CDS 363 654 0.76 + 0 transcript_id "g50.t1"; gene_id "g50"; --- 1407 ---- ! chr2L_1980930-1982119 AUGUSTUS CDS 363 654 0.85 + 0 transcript_id "g50.t1"; gene_id "g50"; *************** *** 1430,1431 **** ! chr2L_2157211-2165491 AUGUSTUS gene 955 3281 0.49 - . g51 ! chr2L_2157211-2165491 AUGUSTUS transcript 955 3281 0.49 - . g51.t1 --- 1430,1431 ---- ! chr2L_2157211-2165491 AUGUSTUS gene 955 3281 0.47 - . g51 ! chr2L_2157211-2165491 AUGUSTUS transcript 955 3281 0.47 - . g51.t1 *************** *** 1437 **** ! chr2L_2157211-2165491 AUGUSTUS CDS 2102 3281 0.49 - 0 transcript_id "g51.t1"; gene_id "g51"; --- 1437 ---- ! chr2L_2157211-2165491 AUGUSTUS CDS 2102 3281 0.47 - 0 transcript_id "g51.t1"; gene_id "g51"; *************** *** 1472,1473 **** ! chr2L_2216827-2221869 AUGUSTUS gene 1 3436 0.57 + . g52 ! chr2L_2216827-2221869 AUGUSTUS transcript 1 3436 0.57 + . g52.t1 --- 1472,1473 ---- ! chr2L_2216827-2221869 AUGUSTUS gene 1 3436 0.46 + . g52 ! chr2L_2216827-2221869 AUGUSTUS transcript 1 3436 0.46 + . g52.t1 *************** *** 1483 **** ! chr2L_2216827-2221869 AUGUSTUS CDS 2951 3436 0.57 + 0 transcript_id "g52.t1"; gene_id "g52"; --- 1483 ---- ! chr2L_2216827-2221869 AUGUSTUS CDS 2951 3436 0.46 + 0 transcript_id "g52.t1"; gene_id "g52"; *************** *** 1512,1513 **** ! chr2L_2225520-2226376 AUGUSTUS intron 483 539 0.76 - . transcript_id "g53.t1"; gene_id "g53"; ! chr2L_2225520-2226376 AUGUSTUS CDS 279 482 0.83 - 0 transcript_id "g53.t1"; gene_id "g53"; --- 1512,1513 ---- ! chr2L_2225520-2226376 AUGUSTUS intron 483 539 0.75 - . transcript_id "g53.t1"; gene_id "g53"; ! chr2L_2225520-2226376 AUGUSTUS CDS 279 482 0.86 - 0 transcript_id "g53.t1"; gene_id "g53"; *************** *** 1560,1561 **** ! chr2L_2485346-2492775 AUGUSTUS gene 5001 7430 0.96 - . g55 ! chr2L_2485346-2492775 AUGUSTUS transcript 5001 7430 0.96 - . g55.t1 --- 1560,1561 ---- ! chr2L_2485346-2492775 AUGUSTUS gene 5001 7430 0.95 - . g55 ! chr2L_2485346-2492775 AUGUSTUS transcript 5001 7430 0.95 - . g55.t1 *************** *** 1566 **** ! chr2L_2485346-2492775 AUGUSTUS intron 7074 7430 0.96 - . transcript_id "g55.t1"; gene_id "g55"; --- 1566 ---- ! chr2L_2485346-2492775 AUGUSTUS intron 7074 7430 0.95 - . transcript_id "g55.t1"; gene_id "g55"; *************** *** 1570 **** ! chr2L_2485346-2492775 AUGUSTUS CDS 6914 7073 1 - 2 transcript_id "g55.t1"; gene_id "g55"; --- 1570 ---- ! chr2L_2485346-2492775 AUGUSTUS CDS 6914 7073 0.99 - 2 transcript_id "g55.t1"; gene_id "g55"; *************** *** 1597,1599 **** ! chr2L_2492776-2496711 AUGUSTUS gene 1 3922 0.54 + . g56 ! chr2L_2492776-2496711 AUGUSTUS transcript 1 3922 0.54 + . g56.t1 ! chr2L_2492776-2496711 AUGUSTUS intron 1 2598 0.54 + . transcript_id "g56.t1"; gene_id "g56"; --- 1597,1599 ---- ! chr2L_2492776-2496711 AUGUSTUS gene 1 3922 0.59 + . g56 ! chr2L_2492776-2496711 AUGUSTUS transcript 1 3922 0.59 + . g56.t1 ! chr2L_2492776-2496711 AUGUSTUS intron 1 2598 0.59 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 1652,1653 **** ! chr2L_2765909-2767213 AUGUSTUS gene 407 1182 0.99 + . g58 ! chr2L_2765909-2767213 AUGUSTUS transcript 407 1182 0.99 + . g58.t1 --- 1652,1653 ---- ! chr2L_2765909-2767213 AUGUSTUS gene 407 1182 1 + . g58 ! chr2L_2765909-2767213 AUGUSTUS transcript 407 1182 1 + . g58.t1 *************** *** 1657 **** ! chr2L_2765909-2767213 AUGUSTUS CDS 859 1182 0.99 + 0 transcript_id "g58.t1"; gene_id "g58"; --- 1657 ---- ! chr2L_2765909-2767213 AUGUSTUS CDS 859 1182 1 + 0 transcript_id "g58.t1"; gene_id "g58"; *************** *** 1709,1710 **** ! chr2L_2969782-2972678 AUGUSTUS gene 211 2516 0.8 - . g60 ! chr2L_2969782-2972678 AUGUSTUS transcript 211 2516 0.8 - . g60.t1 --- 1709,1710 ---- ! chr2L_2969782-2972678 AUGUSTUS gene 211 2516 0.65 - . g60 ! chr2L_2969782-2972678 AUGUSTUS transcript 211 2516 0.65 - . g60.t1 *************** *** 1712,1717 **** ! chr2L_2969782-2972678 AUGUSTUS intron 871 932 0.98 - . transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS intron 1274 1335 0.96 - . transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS intron 1408 1474 0.99 - . transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS CDS 211 870 0.98 - 0 transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS CDS 933 1273 0.84 - 2 transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS CDS 1336 1407 0.96 - 2 transcript_id "g60.t1"; gene_id "g60"; --- 1712,1717 ---- ! chr2L_2969782-2972678 AUGUSTUS intron 871 932 1 - . transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS intron 1274 1335 0.94 - . transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS intron 1408 1474 0.94 - . transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS CDS 211 870 1 - 0 transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS CDS 933 1273 0.7 - 2 transcript_id "g60.t1"; gene_id "g60"; ! chr2L_2969782-2972678 AUGUSTUS CDS 1336 1407 0.94 - 2 transcript_id "g60.t1"; gene_id "g60"; *************** *** 1745,1747 **** ! chr2L_2972679-2974891 AUGUSTUS gene 1 1926 0.99 + . g61 ! chr2L_2972679-2974891 AUGUSTUS transcript 1 1926 0.99 + . g61.t1 ! chr2L_2972679-2974891 AUGUSTUS intron 1 487 0.99 + . transcript_id "g61.t1"; gene_id "g61"; --- 1745,1747 ---- ! chr2L_2972679-2974891 AUGUSTUS gene 1 1926 1 + . g61 ! chr2L_2972679-2974891 AUGUSTUS transcript 1 1926 1 + . g61.t1 ! chr2L_2972679-2974891 AUGUSTUS intron 1 487 1 + . transcript_id "g61.t1"; gene_id "g61"; *************** *** 1749 **** ! chr2L_2972679-2974891 AUGUSTUS CDS 488 690 0.99 + 2 transcript_id "g61.t1"; gene_id "g61"; --- 1749 ---- ! chr2L_2972679-2974891 AUGUSTUS CDS 488 690 1 + 2 transcript_id "g61.t1"; gene_id "g61"; *************** *** 1778,1779 **** ! chr2L_2983726-2991623 AUGUSTUS gene 1 3795 0.12 - . g62 ! chr2L_2983726-2991623 AUGUSTUS transcript 1 3795 0.12 - . g62.t1 --- 1778,1779 ---- ! chr2L_2983726-2991623 AUGUSTUS gene 1 3795 0.15 - . g62 ! chr2L_2983726-2991623 AUGUSTUS transcript 1 3795 0.15 - . g62.t1 *************** *** 1783 **** ! chr2L_2983726-2991623 AUGUSTUS intron 2426 3786 0.12 - . transcript_id "g62.t1"; gene_id "g62"; --- 1783 ---- ! chr2L_2983726-2991623 AUGUSTUS intron 2426 3786 0.15 - . transcript_id "g62.t1"; gene_id "g62"; *************** *** 1787,1788 **** ! chr2L_2983726-2991623 AUGUSTUS CDS 1916 2425 0.91 - 0 transcript_id "g62.t1"; gene_id "g62"; ! chr2L_2983726-2991623 AUGUSTUS CDS 3787 3795 0.12 - 0 transcript_id "g62.t1"; gene_id "g62"; --- 1787,1788 ---- ! chr2L_2983726-2991623 AUGUSTUS CDS 1916 2425 0.96 - 0 transcript_id "g62.t1"; gene_id "g62"; ! chr2L_2983726-2991623 AUGUSTUS CDS 3787 3795 0.15 - 0 transcript_id "g62.t1"; gene_id "g62"; *************** *** 1821,1822 **** ! chr2L_2983726-2991623 AUGUSTUS gene 6342 7898 0.75 - . g64 ! chr2L_2983726-2991623 AUGUSTUS transcript 6342 7898 0.75 - . g64.t1 --- 1821,1822 ---- ! chr2L_2983726-2991623 AUGUSTUS gene 6342 7898 0.72 - . g64 ! chr2L_2983726-2991623 AUGUSTUS transcript 6342 7898 0.72 - . g64.t1 *************** *** 1825,1827 **** ! chr2L_2983726-2991623 AUGUSTUS intron 6875 6935 0.99 - . transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS intron 7342 7399 0.99 - . transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS intron 7554 7609 0.76 - . transcript_id "g64.t1"; gene_id "g64"; --- 1825,1827 ---- ! chr2L_2983726-2991623 AUGUSTUS intron 6875 6935 1 - . transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS intron 7342 7399 0.98 - . transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS intron 7554 7609 0.72 - . transcript_id "g64.t1"; gene_id "g64"; *************** *** 1830,1832 **** ! chr2L_2983726-2991623 AUGUSTUS CDS 6936 7341 0.99 - 1 transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS CDS 7400 7553 0.77 - 2 transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS CDS 7610 7898 0.96 - 0 transcript_id "g64.t1"; gene_id "g64"; --- 1830,1832 ---- ! chr2L_2983726-2991623 AUGUSTUS CDS 6936 7341 1 - 1 transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS CDS 7400 7553 0.72 - 2 transcript_id "g64.t1"; gene_id "g64"; ! chr2L_2983726-2991623 AUGUSTUS CDS 7610 7898 0.98 - 0 transcript_id "g64.t1"; gene_id "g64"; *************** *** 1853,1854 **** ! chr2L_3016786-3023168 AUGUSTUS gene 1 1105 0.9 - . g65 ! chr2L_3016786-3023168 AUGUSTUS transcript 1 1105 0.9 - . g65.t1 --- 1853,1854 ---- ! chr2L_3016786-3023168 AUGUSTUS gene 1 1105 0.93 - . g65 ! chr2L_3016786-3023168 AUGUSTUS transcript 1 1105 0.93 - . g65.t1 *************** *** 1856 **** ! chr2L_3016786-3023168 AUGUSTUS intron 329 393 0.9 - . transcript_id "g65.t1"; gene_id "g65"; --- 1856 ---- ! chr2L_3016786-3023168 AUGUSTUS intron 329 393 0.94 - . transcript_id "g65.t1"; gene_id "g65"; *************** *** 1858 **** ! chr2L_3016786-3023168 AUGUSTUS intron 941 994 1 - . transcript_id "g65.t1"; gene_id "g65"; --- 1858 ---- ! chr2L_3016786-3023168 AUGUSTUS intron 941 994 0.99 - . transcript_id "g65.t1"; gene_id "g65"; *************** *** 1860 **** ! chr2L_3016786-3023168 AUGUSTUS CDS 141 328 0.9 - 2 transcript_id "g65.t1"; gene_id "g65"; --- 1860 ---- ! chr2L_3016786-3023168 AUGUSTUS CDS 141 328 0.94 - 2 transcript_id "g65.t1"; gene_id "g65"; *************** *** 1863 **** ! chr2L_3016786-3023168 AUGUSTUS CDS 995 1105 1 - 0 transcript_id "g65.t1"; gene_id "g65"; --- 1863 ---- ! chr2L_3016786-3023168 AUGUSTUS CDS 995 1105 0.99 - 0 transcript_id "g65.t1"; gene_id "g65"; *************** *** 1872,1873 **** ! chr2L_3016786-3023168 AUGUSTUS gene 2165 4442 0.92 + . g66 ! chr2L_3016786-3023168 AUGUSTUS transcript 2165 4442 0.92 + . g66.t1 --- 1872,1873 ---- ! chr2L_3016786-3023168 AUGUSTUS gene 2165 4442 0.88 + . g66 ! chr2L_3016786-3023168 AUGUSTUS transcript 2165 4442 0.88 + . g66.t1 *************** *** 1875,1878 **** ! chr2L_3016786-3023168 AUGUSTUS intron 2619 2724 0.97 + . transcript_id "g66.t1"; gene_id "g66"; ! chr2L_3016786-3023168 AUGUSTUS intron 3145 3201 0.95 + . transcript_id "g66.t1"; gene_id "g66"; ! chr2L_3016786-3023168 AUGUSTUS CDS 2165 2618 0.96 + 0 transcript_id "g66.t1"; gene_id "g66"; ! chr2L_3016786-3023168 AUGUSTUS CDS 2725 3144 0.92 + 2 transcript_id "g66.t1"; gene_id "g66"; --- 1875,1878 ---- ! chr2L_3016786-3023168 AUGUSTUS intron 2619 2724 0.99 + . transcript_id "g66.t1"; gene_id "g66"; ! chr2L_3016786-3023168 AUGUSTUS intron 3145 3201 0.89 + . transcript_id "g66.t1"; gene_id "g66"; ! chr2L_3016786-3023168 AUGUSTUS CDS 2165 2618 0.99 + 0 transcript_id "g66.t1"; gene_id "g66"; ! chr2L_3016786-3023168 AUGUSTUS CDS 2725 3144 0.88 + 2 transcript_id "g66.t1"; gene_id "g66"; *************** *** 1892,1893 **** ! chr2L_3016786-3023168 AUGUSTUS gene 5001 6164 0.45 - . g67 ! chr2L_3016786-3023168 AUGUSTUS transcript 5001 6164 0.45 - . g67.t1 --- 1892,1893 ---- ! chr2L_3016786-3023168 AUGUSTUS gene 5001 6164 0.4 - . g67 ! chr2L_3016786-3023168 AUGUSTUS transcript 5001 6164 0.4 - . g67.t1 *************** *** 1897 **** ! chr2L_3016786-3023168 AUGUSTUS CDS 5638 6164 0.45 - 0 transcript_id "g67.t1"; gene_id "g67"; --- 1897 ---- ! chr2L_3016786-3023168 AUGUSTUS CDS 5638 6164 0.4 - 0 transcript_id "g67.t1"; gene_id "g67"; *************** *** 1924,1925 **** ! chr2L_3026361-3032366 AUGUSTUS gene 245 2727 0.85 - . g68 ! chr2L_3026361-3032366 AUGUSTUS transcript 245 2727 0.85 - . g68.t1 --- 1924,1925 ---- ! chr2L_3026361-3032366 AUGUSTUS gene 245 2727 0.91 - . g68 ! chr2L_3026361-3032366 AUGUSTUS transcript 245 2727 0.91 - . g68.t1 *************** *** 1930 **** ! chr2L_3026361-3032366 AUGUSTUS intron 2647 2703 0.85 - . transcript_id "g68.t1"; gene_id "g68"; --- 1930 ---- ! chr2L_3026361-3032366 AUGUSTUS intron 2647 2703 0.91 - . transcript_id "g68.t1"; gene_id "g68"; *************** *** 1934,1935 **** ! chr2L_3026361-3032366 AUGUSTUS CDS 2006 2646 0.85 - 0 transcript_id "g68.t1"; gene_id "g68"; ! chr2L_3026361-3032366 AUGUSTUS CDS 2704 2727 0.85 - 0 transcript_id "g68.t1"; gene_id "g68"; --- 1934,1935 ---- ! chr2L_3026361-3032366 AUGUSTUS CDS 2006 2646 0.91 - 0 transcript_id "g68.t1"; gene_id "g68"; ! chr2L_3026361-3032366 AUGUSTUS CDS 2704 2727 0.91 - 0 transcript_id "g68.t1"; gene_id "g68"; *************** *** 1948,1949 **** ! chr2L_3026361-3032366 AUGUSTUS gene 3060 5774 0.54 + . g69 ! chr2L_3026361-3032366 AUGUSTUS transcript 3060 5774 0.54 + . g69.t1 --- 1948,1949 ---- ! chr2L_3026361-3032366 AUGUSTUS gene 3060 5774 0.6 + . g69 ! chr2L_3026361-3032366 AUGUSTUS transcript 3060 5774 0.6 + . g69.t1 *************** *** 1951,1952 **** ! chr2L_3026361-3032366 AUGUSTUS intron 3573 3831 0.54 + . transcript_id "g69.t1"; gene_id "g69"; ! chr2L_3026361-3032366 AUGUSTUS intron 3971 4442 0.73 + . transcript_id "g69.t1"; gene_id "g69"; --- 1951,1952 ---- ! chr2L_3026361-3032366 AUGUSTUS intron 3573 3831 0.6 + . transcript_id "g69.t1"; gene_id "g69"; ! chr2L_3026361-3032366 AUGUSTUS intron 3971 4442 0.81 + . transcript_id "g69.t1"; gene_id "g69"; *************** *** 1955,1957 **** ! chr2L_3026361-3032366 AUGUSTUS CDS 3060 3572 0.76 + 0 transcript_id "g69.t1"; gene_id "g69"; ! chr2L_3026361-3032366 AUGUSTUS CDS 3832 3970 0.54 + 0 transcript_id "g69.t1"; gene_id "g69"; ! chr2L_3026361-3032366 AUGUSTUS CDS 4443 4587 0.99 + 2 transcript_id "g69.t1"; gene_id "g69"; --- 1955,1957 ---- ! chr2L_3026361-3032366 AUGUSTUS CDS 3060 3572 0.8 + 0 transcript_id "g69.t1"; gene_id "g69"; ! chr2L_3026361-3032366 AUGUSTUS CDS 3832 3970 0.61 + 0 transcript_id "g69.t1"; gene_id "g69"; ! chr2L_3026361-3032366 AUGUSTUS CDS 4443 4587 1 + 2 transcript_id "g69.t1"; gene_id "g69"; *************** *** 1991,1992 **** ! chr2L_3326983-3334169 AUGUSTUS gene 954 2643 0.25 + . g70 ! chr2L_3326983-3334169 AUGUSTUS transcript 954 2643 0.25 + . g70.t1 --- 1991,1992 ---- ! chr2L_3326983-3334169 AUGUSTUS gene 954 2643 0.28 + . g70 ! chr2L_3326983-3334169 AUGUSTUS transcript 954 2643 0.28 + . g70.t1 *************** *** 1994,1995 **** ! chr2L_3326983-3334169 AUGUSTUS intron 1024 1090 0.72 + . transcript_id "g70.t1"; gene_id "g70"; ! chr2L_3326983-3334169 AUGUSTUS intron 1325 1570 0.3 + . transcript_id "g70.t1"; gene_id "g70"; --- 1994,1995 ---- ! chr2L_3326983-3334169 AUGUSTUS intron 1024 1090 0.71 + . transcript_id "g70.t1"; gene_id "g70"; ! chr2L_3326983-3334169 AUGUSTUS intron 1325 1570 0.39 + . transcript_id "g70.t1"; gene_id "g70"; *************** *** 1998,2000 **** ! chr2L_3326983-3334169 AUGUSTUS CDS 954 1023 0.85 + 0 transcript_id "g70.t1"; gene_id "g70"; ! chr2L_3326983-3334169 AUGUSTUS CDS 1091 1324 0.34 + 2 transcript_id "g70.t1"; gene_id "g70"; ! chr2L_3326983-3334169 AUGUSTUS CDS 1571 1900 0.35 + 2 transcript_id "g70.t1"; gene_id "g70"; --- 1998,2000 ---- ! chr2L_3326983-3334169 AUGUSTUS CDS 954 1023 0.84 + 0 transcript_id "g70.t1"; gene_id "g70"; ! chr2L_3326983-3334169 AUGUSTUS CDS 1091 1324 0.4 + 2 transcript_id "g70.t1"; gene_id "g70"; ! chr2L_3326983-3334169 AUGUSTUS CDS 1571 1900 0.42 + 2 transcript_id "g70.t1"; gene_id "g70"; *************** *** 2012,2013 **** ! chr2L_3326983-3334169 AUGUSTUS gene 3981 7187 0.69 + . g71 ! chr2L_3326983-3334169 AUGUSTUS transcript 3981 7187 0.69 + . g71.t1 --- 2012,2013 ---- ! chr2L_3326983-3334169 AUGUSTUS gene 3981 7187 0.65 + . g71 ! chr2L_3326983-3334169 AUGUSTUS transcript 3981 7187 0.65 + . g71.t1 *************** *** 2015 **** ! chr2L_3326983-3334169 AUGUSTUS intron 4075 4135 0.94 + . transcript_id "g71.t1"; gene_id "g71"; --- 2015 ---- ! chr2L_3326983-3334169 AUGUSTUS intron 4075 4135 0.96 + . transcript_id "g71.t1"; gene_id "g71"; *************** *** 2018,2023 **** ! chr2L_3326983-3334169 AUGUSTUS intron 4962 5020 0.96 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 5434 5498 0.99 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 5617 6072 0.81 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 6303 6361 0.97 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 6493 6657 1 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 7005 7059 0.97 + . transcript_id "g71.t1"; gene_id "g71"; --- 2018,2023 ---- ! chr2L_3326983-3334169 AUGUSTUS intron 4962 5020 0.94 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 5434 5498 1 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 5617 6072 0.76 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 6303 6361 0.98 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 6493 6657 0.98 + . transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS intron 7005 7059 0.99 + . transcript_id "g71.t1"; gene_id "g71"; *************** *** 2025 **** ! chr2L_3326983-3334169 AUGUSTUS CDS 4136 4365 0.94 + 2 transcript_id "g71.t1"; gene_id "g71"; --- 2025 ---- ! chr2L_3326983-3334169 AUGUSTUS CDS 4136 4365 0.96 + 2 transcript_id "g71.t1"; gene_id "g71"; *************** *** 2027,2030 **** ! chr2L_3326983-3334169 AUGUSTUS CDS 4630 4961 0.96 + 1 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 5021 5433 0.96 + 2 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 5499 5616 0.81 + 0 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 6073 6302 0.95 + 2 transcript_id "g71.t1"; gene_id "g71"; --- 2027,2030 ---- ! chr2L_3326983-3334169 AUGUSTUS CDS 4630 4961 0.94 + 1 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 5021 5433 0.94 + 2 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 5499 5616 0.77 + 0 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 6073 6302 0.97 + 2 transcript_id "g71.t1"; gene_id "g71"; *************** *** 2032,2033 **** ! chr2L_3326983-3334169 AUGUSTUS CDS 6658 7004 1 + 1 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 7060 7187 0.97 + 2 transcript_id "g71.t1"; gene_id "g71"; --- 2032,2033 ---- ! chr2L_3326983-3334169 AUGUSTUS CDS 6658 7004 0.98 + 1 transcript_id "g71.t1"; gene_id "g71"; ! chr2L_3326983-3334169 AUGUSTUS CDS 7060 7187 0.99 + 2 transcript_id "g71.t1"; gene_id "g71"; *************** *** 2055,2057 **** ! chr2L_3367779-3373536 AUGUSTUS gene 1 5269 0.73 - . g72 ! chr2L_3367779-3373536 AUGUSTUS transcript 1 5269 0.73 - . g72.t1 ! chr2L_3367779-3373536 AUGUSTUS intron 1 125 0.91 - . transcript_id "g72.t1"; gene_id "g72"; --- 2055,2057 ---- ! chr2L_3367779-3373536 AUGUSTUS gene 1 5269 0.69 - . g72 ! chr2L_3367779-3373536 AUGUSTUS transcript 1 5269 0.69 - . g72.t1 ! chr2L_3367779-3373536 AUGUSTUS intron 1 125 0.92 - . transcript_id "g72.t1"; gene_id "g72"; *************** *** 2059,2060 **** ! chr2L_3367779-3373536 AUGUSTUS CDS 126 416 0.91 - 1 transcript_id "g72.t1"; gene_id "g72"; ! chr2L_3367779-3373536 AUGUSTUS CDS 5001 5269 0.82 - 0 transcript_id "g72.t1"; gene_id "g72"; --- 2059,2060 ---- ! chr2L_3367779-3373536 AUGUSTUS CDS 126 416 0.92 - 1 transcript_id "g72.t1"; gene_id "g72"; ! chr2L_3367779-3373536 AUGUSTUS CDS 5001 5269 0.73 - 0 transcript_id "g72.t1"; gene_id "g72"; *************** *** 2084,2085 **** ! chr2L_3376860-3383491 AUGUSTUS gene 1 1632 0.96 + . g73 ! chr2L_3376860-3383491 AUGUSTUS transcript 1 1632 0.96 + . g73.t1 --- 2084,2085 ---- ! chr2L_3376860-3383491 AUGUSTUS gene 1 1632 0.95 + . g73 ! chr2L_3376860-3383491 AUGUSTUS transcript 1 1632 0.95 + . g73.t1 *************** *** 2087 **** ! chr2L_3376860-3383491 AUGUSTUS intron 947 1002 0.99 + . transcript_id "g73.t1"; gene_id "g73"; --- 2087 ---- ! chr2L_3376860-3383491 AUGUSTUS intron 947 1002 0.98 + . transcript_id "g73.t1"; gene_id "g73"; *************** *** 2089 **** ! chr2L_3376860-3383491 AUGUSTUS CDS 323 946 0.96 + 2 transcript_id "g73.t1"; gene_id "g73"; --- 2089 ---- ! chr2L_3376860-3383491 AUGUSTUS CDS 323 946 0.95 + 2 transcript_id "g73.t1"; gene_id "g73"; *************** *** 2111,2113 **** ! chr2L_3521210-3527376 AUGUSTUS gene 1 1163 1 + . g74 ! chr2L_3521210-3527376 AUGUSTUS transcript 1 1163 1 + . g74.t1 ! chr2L_3521210-3527376 AUGUSTUS intron 100 158 1 + . transcript_id "g74.t1"; gene_id "g74"; --- 2111,2113 ---- ! chr2L_3521210-3527376 AUGUSTUS gene 1 1163 0.97 + . g74 ! chr2L_3521210-3527376 AUGUSTUS transcript 1 1163 0.97 + . g74.t1 ! chr2L_3521210-3527376 AUGUSTUS intron 100 158 0.98 + . transcript_id "g74.t1"; gene_id "g74"; *************** *** 2115 **** ! chr2L_3521210-3527376 AUGUSTUS CDS 159 1163 1 + 0 transcript_id "g74.t1"; gene_id "g74"; --- 2115 ---- ! chr2L_3521210-3527376 AUGUSTUS CDS 159 1163 0.97 + 0 transcript_id "g74.t1"; gene_id "g74"; *************** *** 2124,2125 **** ! chr2L_3521210-3527376 AUGUSTUS gene 1385 2407 0.9 - . g75 ! chr2L_3521210-3527376 AUGUSTUS transcript 1385 2407 0.9 - . g75.t1 --- 2124,2125 ---- ! chr2L_3521210-3527376 AUGUSTUS gene 1385 2407 0.95 - . g75 ! chr2L_3521210-3527376 AUGUSTUS transcript 1385 2407 0.95 - . g75.t1 *************** *** 2128,2129 **** ! chr2L_3521210-3527376 AUGUSTUS CDS 1385 1868 0.91 - 1 transcript_id "g75.t1"; gene_id "g75"; ! chr2L_3521210-3527376 AUGUSTUS CDS 1935 2407 0.99 - 0 transcript_id "g75.t1"; gene_id "g75"; --- 2128,2129 ---- ! chr2L_3521210-3527376 AUGUSTUS CDS 1385 1868 0.95 - 1 transcript_id "g75.t1"; gene_id "g75"; ! chr2L_3521210-3527376 AUGUSTUS CDS 1935 2407 1 - 0 transcript_id "g75.t1"; gene_id "g75"; *************** *** 2138,2139 **** ! chr2L_3521210-3527376 AUGUSTUS gene 4234 5991 0.86 + . g76 ! chr2L_3521210-3527376 AUGUSTUS transcript 4234 5991 0.86 + . g76.t1 --- 2138,2139 ---- ! chr2L_3521210-3527376 AUGUSTUS gene 4234 5991 0.89 + . g76 ! chr2L_3521210-3527376 AUGUSTUS transcript 4234 5991 0.89 + . g76.t1 *************** *** 2141 **** ! chr2L_3521210-3527376 AUGUSTUS CDS 4234 5991 0.86 + 0 transcript_id "g76.t1"; gene_id "g76"; --- 2141 ---- ! chr2L_3521210-3527376 AUGUSTUS CDS 4234 5991 0.89 + 0 transcript_id "g76.t1"; gene_id "g76"; *************** *** 2183,2184 **** ! chr2L_3616149-3622022 AUGUSTUS gene 5001 5874 0.77 - . g78 ! chr2L_3616149-3622022 AUGUSTUS transcript 5001 5874 0.77 - . g78.t1 --- 2183,2184 ---- ! chr2L_3616149-3622022 AUGUSTUS gene 5001 5874 0.85 - . g78 ! chr2L_3616149-3622022 AUGUSTUS transcript 5001 5874 0.85 - . g78.t1 *************** *** 2186,2187 **** ! chr2L_3616149-3622022 AUGUSTUS intron 5177 5874 0.77 - . transcript_id "g78.t1"; gene_id "g78"; ! chr2L_3616149-3622022 AUGUSTUS CDS 5001 5176 0.86 - 2 transcript_id "g78.t1"; gene_id "g78"; --- 2186,2187 ---- ! chr2L_3616149-3622022 AUGUSTUS intron 5177 5874 0.85 - . transcript_id "g78.t1"; gene_id "g78"; ! chr2L_3616149-3622022 AUGUSTUS CDS 5001 5176 0.96 - 2 transcript_id "g78.t1"; gene_id "g78"; *************** *** 2202,2204 **** ! chr2L_3686185-3691832 AUGUSTUS gene 1 5294 1 + . g79 ! chr2L_3686185-3691832 AUGUSTUS transcript 1 5294 1 + . g79.t1 ! chr2L_3686185-3691832 AUGUSTUS intron 1 4137 1 + . transcript_id "g79.t1"; gene_id "g79"; --- 2202,2204 ---- ! chr2L_3686185-3691832 AUGUSTUS gene 1 5294 0.99 + . g79 ! chr2L_3686185-3691832 AUGUSTUS transcript 1 5294 0.99 + . g79.t1 ! chr2L_3686185-3691832 AUGUSTUS intron 1 4137 0.99 + . transcript_id "g79.t1"; gene_id "g79"; *************** *** 2227,2228 **** ! chr2L_3694111-3696971 AUGUSTUS gene 2180 2488 0.59 - . g80 ! chr2L_3694111-3696971 AUGUSTUS transcript 2180 2488 0.59 - . g80.t1 --- 2227,2228 ---- ! chr2L_3694111-3696971 AUGUSTUS gene 2180 2488 0.73 - . g80 ! chr2L_3694111-3696971 AUGUSTUS transcript 2180 2488 0.73 - . g80.t1 *************** *** 2230,2232 **** ! chr2L_3694111-3696971 AUGUSTUS intron 2362 2421 0.93 - . transcript_id "g80.t1"; gene_id "g80"; ! chr2L_3694111-3696971 AUGUSTUS CDS 2180 2361 0.93 - 2 transcript_id "g80.t1"; gene_id "g80"; ! chr2L_3694111-3696971 AUGUSTUS CDS 2422 2488 0.59 - 0 transcript_id "g80.t1"; gene_id "g80"; --- 2230,2232 ---- ! chr2L_3694111-3696971 AUGUSTUS intron 2362 2421 0.95 - . transcript_id "g80.t1"; gene_id "g80"; ! chr2L_3694111-3696971 AUGUSTUS CDS 2180 2361 0.95 - 2 transcript_id "g80.t1"; gene_id "g80"; ! chr2L_3694111-3696971 AUGUSTUS CDS 2422 2488 0.73 - 0 transcript_id "g80.t1"; gene_id "g80"; *************** *** 2275,2277 **** ! chr2L_3709655-3714831 AUGUSTUS gene 1 1964 0.55 - . g81 ! chr2L_3709655-3714831 AUGUSTUS transcript 1 1964 0.55 - . g81.t1 ! chr2L_3709655-3714831 AUGUSTUS intron 1 175 0.55 - . transcript_id "g81.t1"; gene_id "g81"; --- 2275,2277 ---- ! chr2L_3709655-3714831 AUGUSTUS gene 1 1964 0.58 - . g81 ! chr2L_3709655-3714831 AUGUSTUS transcript 1 1964 0.58 - . g81.t1 ! chr2L_3709655-3714831 AUGUSTUS intron 1 175 0.58 - . transcript_id "g81.t1"; gene_id "g81"; *************** *** 2280 **** ! chr2L_3709655-3714831 AUGUSTUS CDS 176 391 0.56 - 2 transcript_id "g81.t1"; gene_id "g81"; --- 2280 ---- ! chr2L_3709655-3714831 AUGUSTUS CDS 176 391 0.62 - 2 transcript_id "g81.t1"; gene_id "g81"; *************** *** 2296,2297 **** ! chr2L_3709655-3714831 AUGUSTUS intron 4838 4992 0.92 + . transcript_id "g82.t1"; gene_id "g82"; ! chr2L_3709655-3714831 AUGUSTUS CDS 4439 4837 0.55 + 0 transcript_id "g82.t1"; gene_id "g82"; --- 2296,2297 ---- ! chr2L_3709655-3714831 AUGUSTUS intron 4838 4992 0.91 + . transcript_id "g82.t1"; gene_id "g82"; ! chr2L_3709655-3714831 AUGUSTUS CDS 4439 4837 0.56 + 0 transcript_id "g82.t1"; gene_id "g82"; *************** *** 2315,2316 **** ! chr2L_3804074-3810192 AUGUSTUS gene 3092 4168 0.8 + . g83 ! chr2L_3804074-3810192 AUGUSTUS transcript 3092 4168 0.8 + . g83.t1 --- 2315,2316 ---- ! chr2L_3804074-3810192 AUGUSTUS gene 3092 4168 0.67 + . g83 ! chr2L_3804074-3810192 AUGUSTUS transcript 3092 4168 0.67 + . g83.t1 *************** *** 2318 **** ! chr2L_3804074-3810192 AUGUSTUS CDS 3092 4168 0.8 + 0 transcript_id "g83.t1"; gene_id "g83"; --- 2318 ---- ! chr2L_3804074-3810192 AUGUSTUS CDS 3092 4168 0.67 + 0 transcript_id "g83.t1"; gene_id "g83"; *************** *** 2343,2344 **** ! chr2L_3810193-3818330 AUGUSTUS gene 802 3138 0.97 - . g84 ! chr2L_3810193-3818330 AUGUSTUS transcript 802 3138 0.97 - . g84.t1 --- 2343,2344 ---- ! chr2L_3810193-3818330 AUGUSTUS gene 802 3138 1 - . g84 ! chr2L_3810193-3818330 AUGUSTUS transcript 802 3138 1 - . g84.t1 *************** *** 2347 **** ! chr2L_3810193-3818330 AUGUSTUS intron 2343 2402 0.98 - . transcript_id "g84.t1"; gene_id "g84"; --- 2347 ---- ! chr2L_3810193-3818330 AUGUSTUS intron 2343 2402 1 - . transcript_id "g84.t1"; gene_id "g84"; *************** *** 2350 **** ! chr2L_3810193-3818330 AUGUSTUS CDS 1379 2342 0.98 - 0 transcript_id "g84.t1"; gene_id "g84"; --- 2350 ---- ! chr2L_3810193-3818330 AUGUSTUS CDS 1379 2342 1 - 0 transcript_id "g84.t1"; gene_id "g84"; *************** *** 2352 **** ! chr2L_3810193-3818330 AUGUSTUS CDS 3097 3138 0.99 - 0 transcript_id "g84.t1"; gene_id "g84"; --- 2352 ---- ! chr2L_3810193-3818330 AUGUSTUS CDS 3097 3138 1 - 0 transcript_id "g84.t1"; gene_id "g84"; *************** *** 2377,2381 **** ! chr2L_3866553-3877335 AUGUSTUS gene 1 672 0.97 + . g85 ! chr2L_3866553-3877335 AUGUSTUS transcript 1 672 0.97 + . g85.t1 ! chr2L_3866553-3877335 AUGUSTUS intron 435 516 1 + . transcript_id "g85.t1"; gene_id "g85"; ! chr2L_3866553-3877335 AUGUSTUS CDS 1 434 1 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chr2L_3866553-3877335 AUGUSTUS CDS 517 672 0.97 + 0 transcript_id "g85.t1"; gene_id "g85"; --- 2377,2381 ---- ! chr2L_3866553-3877335 AUGUSTUS gene 1 672 0.98 + . g85 ! chr2L_3866553-3877335 AUGUSTUS transcript 1 672 0.98 + . g85.t1 ! chr2L_3866553-3877335 AUGUSTUS intron 435 516 0.99 + . transcript_id "g85.t1"; gene_id "g85"; ! chr2L_3866553-3877335 AUGUSTUS CDS 1 434 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chr2L_3866553-3877335 AUGUSTUS CDS 517 672 0.99 + 0 transcript_id "g85.t1"; gene_id "g85"; *************** *** 2389,2390 **** ! chr2L_3866553-3877335 AUGUSTUS gene 1430 4637 0.69 + . g86 ! chr2L_3866553-3877335 AUGUSTUS transcript 1430 4637 0.69 + . g86.t1 --- 2389,2390 ---- ! chr2L_3866553-3877335 AUGUSTUS gene 1430 4637 0.79 + . g86 ! chr2L_3866553-3877335 AUGUSTUS transcript 1430 4637 0.79 + . g86.t1 *************** *** 2392,2393 **** ! chr2L_3866553-3877335 AUGUSTUS intron 1437 1827 0.9 + . transcript_id "g86.t1"; gene_id "g86"; ! chr2L_3866553-3877335 AUGUSTUS intron 1989 2051 0.8 + . transcript_id "g86.t1"; gene_id "g86"; --- 2392,2393 ---- ! chr2L_3866553-3877335 AUGUSTUS intron 1437 1827 0.95 + . transcript_id "g86.t1"; gene_id "g86"; ! chr2L_3866553-3877335 AUGUSTUS intron 1989 2051 0.88 + . transcript_id "g86.t1"; gene_id "g86"; *************** *** 2396 **** ! chr2L_3866553-3877335 AUGUSTUS intron 3252 3320 0.99 + . transcript_id "g86.t1"; gene_id "g86"; --- 2396 ---- ! chr2L_3866553-3877335 AUGUSTUS intron 3252 3320 0.98 + . transcript_id "g86.t1"; gene_id "g86"; *************** *** 2399,2400 **** ! chr2L_3866553-3877335 AUGUSTUS CDS 1430 1436 0.9 + 0 transcript_id "g86.t1"; gene_id "g86"; ! chr2L_3866553-3877335 AUGUSTUS CDS 1828 1988 0.8 + 2 transcript_id "g86.t1"; gene_id "g86"; --- 2399,2400 ---- ! chr2L_3866553-3877335 AUGUSTUS CDS 1430 1436 0.95 + 0 transcript_id "g86.t1"; gene_id "g86"; ! chr2L_3866553-3877335 AUGUSTUS CDS 1828 1988 0.88 + 2 transcript_id "g86.t1"; gene_id "g86"; *************** *** 2403,2404 **** ! chr2L_3866553-3877335 AUGUSTUS CDS 2991 3251 0.99 + 2 transcript_id "g86.t1"; gene_id "g86"; ! chr2L_3866553-3877335 AUGUSTUS CDS 3321 3497 0.98 + 2 transcript_id "g86.t1"; gene_id "g86"; --- 2403,2404 ---- ! chr2L_3866553-3877335 AUGUSTUS CDS 2991 3251 0.98 + 2 transcript_id "g86.t1"; gene_id "g86"; ! chr2L_3866553-3877335 AUGUSTUS CDS 3321 3497 0.97 + 2 transcript_id "g86.t1"; gene_id "g86"; *************** *** 2420,2421 **** ! chr2L_3866553-3877335 AUGUSTUS gene 5001 5783 0.95 - . g87 ! chr2L_3866553-3877335 AUGUSTUS transcript 5001 5783 0.95 - . g87.t1 --- 2420,2421 ---- ! chr2L_3866553-3877335 AUGUSTUS gene 5001 5783 0.97 - . g87 ! chr2L_3866553-3877335 AUGUSTUS transcript 5001 5783 0.97 - . g87.t1 *************** *** 2425 **** ! chr2L_3866553-3877335 AUGUSTUS CDS 5621 5783 0.95 - 0 transcript_id "g87.t1"; gene_id "g87"; --- 2425 ---- ! chr2L_3866553-3877335 AUGUSTUS CDS 5621 5783 0.97 - 0 transcript_id "g87.t1"; gene_id "g87"; *************** *** 2432,2433 **** ! chr2L_3866553-3877335 AUGUSTUS gene 6278 8741 0.97 - . g88 ! chr2L_3866553-3877335 AUGUSTUS transcript 6278 8741 0.97 - . g88.t1 --- 2432,2433 ---- ! chr2L_3866553-3877335 AUGUSTUS gene 6278 8741 0.94 - . g88 ! chr2L_3866553-3877335 AUGUSTUS transcript 6278 8741 0.94 - . g88.t1 *************** *** 2437 **** ! chr2L_3866553-3877335 AUGUSTUS intron 7844 7897 1 - . transcript_id "g88.t1"; gene_id "g88"; --- 2437 ---- ! chr2L_3866553-3877335 AUGUSTUS intron 7844 7897 0.98 - . transcript_id "g88.t1"; gene_id "g88"; *************** *** 2440,2441 **** ! chr2L_3866553-3877335 AUGUSTUS CDS 6833 7843 1 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chr2L_3866553-3877335 AUGUSTUS CDS 7898 8741 0.97 - 0 transcript_id "g88.t1"; gene_id "g88"; --- 2440,2441 ---- ! chr2L_3866553-3877335 AUGUSTUS CDS 6833 7843 0.98 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chr2L_3866553-3877335 AUGUSTUS CDS 7898 8741 0.96 - 0 transcript_id "g88.t1"; gene_id "g88"; *************** *** 2484,2485 **** ! chr2L_4005742-4007069 AUGUSTUS gene 372 695 1 + . g90 ! chr2L_4005742-4007069 AUGUSTUS transcript 372 695 1 + . g90.t1 --- 2484,2485 ---- ! chr2L_4005742-4007069 AUGUSTUS gene 372 695 0.99 + . g90 ! chr2L_4005742-4007069 AUGUSTUS transcript 372 695 0.99 + . g90.t1 *************** *** 2487 **** ! chr2L_4005742-4007069 AUGUSTUS CDS 372 695 1 + 0 transcript_id "g90.t1"; gene_id "g90"; --- 2487 ---- ! chr2L_4005742-4007069 AUGUSTUS CDS 372 695 0.99 + 0 transcript_id "g90.t1"; gene_id "g90"; *************** *** 2504,2507 **** ! chr2L_4008322-4013999 AUGUSTUS gene 1 678 0.69 + . g91 ! chr2L_4008322-4013999 AUGUSTUS transcript 1 678 0.69 + . g91.t1 ! chr2L_4008322-4013999 AUGUSTUS intron 1 426 0.69 + . transcript_id "g91.t1"; gene_id "g91"; ! chr2L_4008322-4013999 AUGUSTUS CDS 427 678 0.69 + 0 transcript_id "g91.t1"; gene_id "g91"; --- 2504,2507 ---- ! chr2L_4008322-4013999 AUGUSTUS gene 1 678 0.78 + . g91 ! chr2L_4008322-4013999 AUGUSTUS transcript 1 678 0.78 + . g91.t1 ! chr2L_4008322-4013999 AUGUSTUS intron 1 426 0.78 + . transcript_id "g91.t1"; gene_id "g91"; ! chr2L_4008322-4013999 AUGUSTUS CDS 427 678 0.78 + 0 transcript_id "g91.t1"; gene_id "g91"; *************** *** 2538,2539 **** ! chr2L_4027676-4113832 AUGUSTUS gene 44563 52355 0.23 + . g92 ! chr2L_4027676-4113832 AUGUSTUS transcript 44563 52355 0.23 + . g92.t1 --- 2538,2539 ---- ! chr2L_4027676-4113832 AUGUSTUS gene 44563 52355 0.19 + . g92 ! chr2L_4027676-4113832 AUGUSTUS transcript 44563 52355 0.19 + . g92.t1 *************** *** 2541,2542 **** ! chr2L_4027676-4113832 AUGUSTUS intron 44579 46838 0.28 + . transcript_id "g92.t1"; gene_id "g92"; ! chr2L_4027676-4113832 AUGUSTUS intron 47038 51828 1 + . transcript_id "g92.t1"; gene_id "g92"; --- 2541,2542 ---- ! chr2L_4027676-4113832 AUGUSTUS intron 44579 46838 0.21 + . transcript_id "g92.t1"; gene_id "g92"; ! chr2L_4027676-4113832 AUGUSTUS intron 47038 51828 0.99 + . transcript_id "g92.t1"; gene_id "g92"; *************** *** 2544 **** ! chr2L_4027676-4113832 AUGUSTUS CDS 44563 44578 0.24 + 0 transcript_id "g92.t1"; gene_id "g92"; --- 2544 ---- ! chr2L_4027676-4113832 AUGUSTUS CDS 44563 44578 0.19 + 0 transcript_id "g92.t1"; gene_id "g92"; *************** *** 2555,2556 **** ! chr2L_4027676-4113832 AUGUSTUS gene 68579 86127 0.43 + . g93 ! chr2L_4027676-4113832 AUGUSTUS transcript 68579 86127 0.43 + . g93.t1 --- 2555,2556 ---- ! chr2L_4027676-4113832 AUGUSTUS gene 68579 86127 0.35 + . g93 ! chr2L_4027676-4113832 AUGUSTUS transcript 68579 86127 0.35 + . g93.t1 *************** *** 2558,2559 **** ! chr2L_4027676-4113832 AUGUSTUS intron 68598 70174 0.53 + . transcript_id "g93.t1"; gene_id "g93"; ! chr2L_4027676-4113832 AUGUSTUS intron 72365 72946 0.85 + . transcript_id "g93.t1"; gene_id "g93"; --- 2558,2559 ---- ! chr2L_4027676-4113832 AUGUSTUS intron 68598 70174 0.41 + . transcript_id "g93.t1"; gene_id "g93"; ! chr2L_4027676-4113832 AUGUSTUS intron 72365 72946 0.88 + . transcript_id "g93.t1"; gene_id "g93"; *************** *** 2562,2564 **** ! chr2L_4027676-4113832 AUGUSTUS CDS 68579 68597 0.53 + 0 transcript_id "g93.t1"; gene_id "g93"; ! chr2L_4027676-4113832 AUGUSTUS CDS 70175 72364 0.87 + 2 transcript_id "g93.t1"; gene_id "g93"; ! chr2L_4027676-4113832 AUGUSTUS CDS 72947 73453 0.98 + 2 transcript_id "g93.t1"; gene_id "g93"; --- 2562,2564 ---- ! chr2L_4027676-4113832 AUGUSTUS CDS 68579 68597 0.41 + 0 transcript_id "g93.t1"; gene_id "g93"; ! chr2L_4027676-4113832 AUGUSTUS CDS 70175 72364 0.93 + 2 transcript_id "g93.t1"; gene_id "g93"; ! chr2L_4027676-4113832 AUGUSTUS CDS 72947 73453 0.95 + 2 transcript_id "g93.t1"; gene_id "g93"; *************** *** 2599,2600 **** ! chr2L_4118008-4128899 AUGUSTUS gene 412 5892 0.08 + . g94 ! chr2L_4118008-4128899 AUGUSTUS transcript 412 5892 0.08 + . g94.t1 --- 2599,2600 ---- ! chr2L_4118008-4128899 AUGUSTUS gene 412 5892 0.15 + . g94 ! chr2L_4118008-4128899 AUGUSTUS transcript 412 5892 0.15 + . g94.t1 *************** *** 2602 **** ! chr2L_4118008-4128899 AUGUSTUS intron 423 2432 0.31 + . transcript_id "g94.t1"; gene_id "g94"; --- 2602 ---- ! chr2L_4118008-4128899 AUGUSTUS intron 423 2432 0.3 + . transcript_id "g94.t1"; gene_id "g94"; *************** *** 2604,2605 **** ! chr2L_4118008-4128899 AUGUSTUS intron 3189 3248 0.98 + . transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS intron 3383 4038 0.59 + . transcript_id "g94.t1"; gene_id "g94"; --- 2604,2605 ---- ! chr2L_4118008-4128899 AUGUSTUS intron 3189 3248 0.99 + . transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS intron 3383 4038 0.56 + . transcript_id "g94.t1"; gene_id "g94"; *************** *** 2607,2611 **** ! chr2L_4118008-4128899 AUGUSTUS intron 5472 5530 0.98 + . transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 412 422 0.31 + 0 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 2433 2590 0.49 + 1 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 2648 3188 0.97 + 2 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 3249 3382 0.59 + 1 transcript_id "g94.t1"; gene_id "g94"; --- 2607,2611 ---- ! chr2L_4118008-4128899 AUGUSTUS intron 5472 5530 0.96 + . transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 412 422 0.29 + 0 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 2433 2590 0.5 + 1 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 2648 3188 0.99 + 2 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 3249 3382 0.56 + 1 transcript_id "g94.t1"; gene_id "g94"; *************** *** 2613,2614 **** ! chr2L_4118008-4128899 AUGUSTUS CDS 4708 5471 0.76 + 1 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 5531 5892 0.98 + 2 transcript_id "g94.t1"; gene_id "g94"; --- 2613,2614 ---- ! chr2L_4118008-4128899 AUGUSTUS CDS 4708 5471 0.81 + 1 transcript_id "g94.t1"; gene_id "g94"; ! chr2L_4118008-4128899 AUGUSTUS CDS 5531 5892 0.97 + 2 transcript_id "g94.t1"; gene_id "g94"; *************** *** 2638,2639 **** ! chr2L_4181416-4187815 AUGUSTUS gene 5001 6068 0.97 - . g95 ! chr2L_4181416-4187815 AUGUSTUS transcript 5001 6068 0.97 - . g95.t1 --- 2638,2639 ---- ! chr2L_4181416-4187815 AUGUSTUS gene 5001 6068 0.98 - . g95 ! chr2L_4181416-4187815 AUGUSTUS transcript 5001 6068 0.98 - . g95.t1 *************** *** 2641 **** ! chr2L_4181416-4187815 AUGUSTUS CDS 5001 6068 0.97 - 0 transcript_id "g95.t1"; gene_id "g95"; --- 2641 ---- ! chr2L_4181416-4187815 AUGUSTUS CDS 5001 6068 0.98 - 0 transcript_id "g95.t1"; gene_id "g95"; *************** *** 2668,2669 **** ! chr2L_4388710-4393512 AUGUSTUS gene 16 3977 0.82 + . g96 ! chr2L_4388710-4393512 AUGUSTUS transcript 16 3977 0.82 + . g96.t1 --- 2668,2669 ---- ! chr2L_4388710-4393512 AUGUSTUS gene 16 3977 0.78 + . g96 ! chr2L_4388710-4393512 AUGUSTUS transcript 16 3977 0.78 + . g96.t1 *************** *** 2675,2676 **** ! chr2L_4388710-4393512 AUGUSTUS CDS 16 149 0.84 + 0 transcript_id "g96.t1"; gene_id "g96"; ! chr2L_4388710-4393512 AUGUSTUS CDS 1456 1996 1 + 1 transcript_id "g96.t1"; gene_id "g96"; --- 2675,2676 ---- ! chr2L_4388710-4393512 AUGUSTUS CDS 16 149 0.8 + 0 transcript_id "g96.t1"; gene_id "g96"; ! chr2L_4388710-4393512 AUGUSTUS CDS 1456 1996 0.99 + 1 transcript_id "g96.t1"; gene_id "g96"; *************** *** 2719,2720 **** ! chr2L_4453122-4454545 AUGUSTUS gene 170 1241 0.64 - . g98 ! chr2L_4453122-4454545 AUGUSTUS transcript 170 1241 0.64 - . g98.t1 --- 2719,2720 ---- ! chr2L_4453122-4454545 AUGUSTUS gene 170 1241 0.62 - . g98 ! chr2L_4453122-4454545 AUGUSTUS transcript 170 1241 0.62 - . g98.t1 *************** *** 2722,2724 **** ! chr2L_4453122-4454545 AUGUSTUS intron 1145 1205 0.65 - . transcript_id "g98.t1"; gene_id "g98"; ! chr2L_4453122-4454545 AUGUSTUS CDS 170 1144 0.74 - 0 transcript_id "g98.t1"; gene_id "g98"; ! chr2L_4453122-4454545 AUGUSTUS CDS 1206 1241 0.64 - 0 transcript_id "g98.t1"; gene_id "g98"; --- 2722,2724 ---- ! chr2L_4453122-4454545 AUGUSTUS intron 1145 1205 0.64 - . transcript_id "g98.t1"; gene_id "g98"; ! chr2L_4453122-4454545 AUGUSTUS CDS 170 1144 0.71 - 0 transcript_id "g98.t1"; gene_id "g98"; ! chr2L_4453122-4454545 AUGUSTUS CDS 1206 1241 0.62 - 0 transcript_id "g98.t1"; gene_id "g98"; *************** *** 2761,2762 **** ! chr2L_4454546-4457071 AUGUSTUS gene 781 1444 0.95 - . g100 ! chr2L_4454546-4457071 AUGUSTUS transcript 781 1444 0.95 - . g100.t1 --- 2761,2762 ---- ! chr2L_4454546-4457071 AUGUSTUS gene 781 1444 0.96 - . g100 ! chr2L_4454546-4457071 AUGUSTUS transcript 781 1444 0.96 - . g100.t1 *************** *** 2766 **** ! chr2L_4454546-4457071 AUGUSTUS CDS 1312 1444 0.95 - 0 transcript_id "g100.t1"; gene_id "g100"; --- 2766 ---- ! chr2L_4454546-4457071 AUGUSTUS CDS 1312 1444 0.96 - 0 transcript_id "g100.t1"; gene_id "g100"; *************** *** 2774,2775 **** ! chr2L_4454546-4457071 AUGUSTUS gene 1492 2526 0.45 - . g101 ! chr2L_4454546-4457071 AUGUSTUS transcript 1492 2526 0.45 - . g101.t1 --- 2774,2775 ---- ! chr2L_4454546-4457071 AUGUSTUS gene 1492 2526 0.47 - . g101 ! chr2L_4454546-4457071 AUGUSTUS transcript 1492 2526 0.47 - . g101.t1 *************** *** 2778,2780 **** ! chr2L_4454546-4457071 AUGUSTUS intron 1926 2526 0.49 - . transcript_id "g101.t1"; gene_id "g101"; ! chr2L_4454546-4457071 AUGUSTUS CDS 1492 1787 0.95 - 2 transcript_id "g101.t1"; gene_id "g101"; ! chr2L_4454546-4457071 AUGUSTUS CDS 1841 1925 0.49 - 0 transcript_id "g101.t1"; gene_id "g101"; --- 2778,2780 ---- ! chr2L_4454546-4457071 AUGUSTUS intron 1926 2526 0.5 - . transcript_id "g101.t1"; gene_id "g101"; ! chr2L_4454546-4457071 AUGUSTUS CDS 1492 1787 0.96 - 2 transcript_id "g101.t1"; gene_id "g101"; ! chr2L_4454546-4457071 AUGUSTUS CDS 1841 1925 0.5 - 0 transcript_id "g101.t1"; gene_id "g101"; *************** *** 2800,2801 **** ! chr2L_4457072-4459762 AUGUSTUS gene 310 1220 0.67 - . g102 ! chr2L_4457072-4459762 AUGUSTUS transcript 310 1220 0.67 - . g102.t1 --- 2800,2801 ---- ! chr2L_4457072-4459762 AUGUSTUS gene 310 1220 0.74 - . g102 ! chr2L_4457072-4459762 AUGUSTUS transcript 310 1220 0.74 - . g102.t1 *************** *** 2804 **** ! chr2L_4457072-4459762 AUGUSTUS intron 987 1217 0.67 - . transcript_id "g102.t1"; gene_id "g102"; --- 2804 ---- ! chr2L_4457072-4459762 AUGUSTUS intron 987 1217 0.74 - . transcript_id "g102.t1"; gene_id "g102"; *************** *** 2807 **** ! chr2L_4457072-4459762 AUGUSTUS CDS 1218 1220 0.67 - 0 transcript_id "g102.t1"; gene_id "g102"; --- 2807 ---- ! chr2L_4457072-4459762 AUGUSTUS CDS 1218 1220 0.74 - 0 transcript_id "g102.t1"; gene_id "g102"; *************** *** 2814,2815 **** ! chr2L_4457072-4459762 AUGUSTUS gene 1933 2476 0.67 - . g103 ! chr2L_4457072-4459762 AUGUSTUS transcript 1933 2476 0.67 - . g103.t1 --- 2814,2815 ---- ! chr2L_4457072-4459762 AUGUSTUS gene 1933 2476 0.77 - . g103 ! chr2L_4457072-4459762 AUGUSTUS transcript 1933 2476 0.77 - . g103.t1 *************** *** 2818,2819 **** ! chr2L_4457072-4459762 AUGUSTUS intron 2359 2412 0.99 - . transcript_id "g103.t1"; gene_id "g103"; ! chr2L_4457072-4459762 AUGUSTUS CDS 1933 2136 0.7 - 0 transcript_id "g103.t1"; gene_id "g103"; --- 2818,2819 ---- ! chr2L_4457072-4459762 AUGUSTUS intron 2359 2412 1 - . transcript_id "g103.t1"; gene_id "g103"; ! chr2L_4457072-4459762 AUGUSTUS CDS 1933 2136 0.79 - 0 transcript_id "g103.t1"; gene_id "g103"; *************** *** 2821 **** ! chr2L_4457072-4459762 AUGUSTUS CDS 2413 2476 0.96 - 0 transcript_id "g103.t1"; gene_id "g103"; --- 2821 ---- ! chr2L_4457072-4459762 AUGUSTUS CDS 2413 2476 0.98 - 0 transcript_id "g103.t1"; gene_id "g103"; *************** *** 2846,2847 **** ! chr2L_4874021-4887392 AUGUSTUS CDS 60 149 0.97 + 0 transcript_id "g104.t1"; gene_id "g104"; ! chr2L_4874021-4887392 AUGUSTUS CDS 867 1064 1 + 0 transcript_id "g104.t1"; gene_id "g104"; --- 2846,2847 ---- ! chr2L_4874021-4887392 AUGUSTUS CDS 60 149 1 + 0 transcript_id "g104.t1"; gene_id "g104"; ! chr2L_4874021-4887392 AUGUSTUS CDS 867 1064 0.99 + 0 transcript_id "g104.t1"; gene_id "g104"; *************** *** 2854,2855 **** ! chr2L_4874021-4887392 AUGUSTUS gene 5001 8372 0.3 - . g105 ! chr2L_4874021-4887392 AUGUSTUS transcript 5001 8372 0.3 - . g105.t1 --- 2854,2855 ---- ! chr2L_4874021-4887392 AUGUSTUS gene 5001 8372 0.36 - . g105 ! chr2L_4874021-4887392 AUGUSTUS transcript 5001 8372 0.36 - . g105.t1 *************** *** 2857,2861 **** ! chr2L_4874021-4887392 AUGUSTUS intron 5177 6357 0.3 - . transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS intron 6453 7194 0.3 - . transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS CDS 5001 5176 0.97 - 2 transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS CDS 6358 6452 0.3 - 1 transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS CDS 7195 8372 0.3 - 0 transcript_id "g105.t1"; gene_id "g105"; --- 2857,2861 ---- ! chr2L_4874021-4887392 AUGUSTUS intron 5177 6357 0.36 - . transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS intron 6453 7194 0.36 - . transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS CDS 5001 5176 0.99 - 2 transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS CDS 6358 6452 0.36 - 1 transcript_id "g105.t1"; gene_id "g105"; ! chr2L_4874021-4887392 AUGUSTUS CDS 7195 8372 0.36 - 0 transcript_id "g105.t1"; gene_id "g105"; *************** *** 2872,2873 **** ! chr2L_4874021-4887392 AUGUSTUS gene 9627 11489 0.99 + . g106 ! chr2L_4874021-4887392 AUGUSTUS transcript 9627 11489 0.99 + . g106.t1 --- 2872,2873 ---- ! chr2L_4874021-4887392 AUGUSTUS gene 9627 11489 0.97 + . g106 ! chr2L_4874021-4887392 AUGUSTUS transcript 9627 11489 0.97 + . g106.t1 *************** *** 2876 **** ! chr2L_4874021-4887392 AUGUSTUS CDS 9627 10319 0.99 + 0 transcript_id "g106.t1"; gene_id "g106"; --- 2876 ---- ! chr2L_4874021-4887392 AUGUSTUS CDS 9627 10319 0.97 + 0 transcript_id "g106.t1"; gene_id "g106"; *************** *** 2951,2952 **** ! chr2L_5038935-5040471 AUGUSTUS CDS 177 806 0.89 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chr2L_5038935-5040471 AUGUSTUS CDS 875 1126 0.82 + 0 transcript_id "g109.t1"; gene_id "g109"; --- 2951,2952 ---- ! chr2L_5038935-5040471 AUGUSTUS CDS 177 806 0.88 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chr2L_5038935-5040471 AUGUSTUS CDS 875 1126 0.85 + 0 transcript_id "g109.t1"; gene_id "g109"; *************** *** 2975,2976 **** ! chr2L_5047040-5049545 AUGUSTUS gene 65 739 0.95 + . g110 ! chr2L_5047040-5049545 AUGUSTUS transcript 65 739 0.95 + . g110.t1 --- 2975,2976 ---- ! chr2L_5047040-5049545 AUGUSTUS gene 65 739 0.97 + . g110 ! chr2L_5047040-5049545 AUGUSTUS transcript 65 739 0.97 + . g110.t1 *************** *** 2979 **** ! chr2L_5047040-5049545 AUGUSTUS intron 441 503 0.95 + . transcript_id "g110.t1"; gene_id "g110"; --- 2979 ---- ! chr2L_5047040-5049545 AUGUSTUS intron 441 503 0.97 + . transcript_id "g110.t1"; gene_id "g110"; *************** *** 2981 **** ! chr2L_5047040-5049545 AUGUSTUS CDS 234 440 0.95 + 2 transcript_id "g110.t1"; gene_id "g110"; --- 2981 ---- ! chr2L_5047040-5049545 AUGUSTUS CDS 234 440 0.97 + 2 transcript_id "g110.t1"; gene_id "g110"; *************** *** 2990,2991 **** ! chr2L_5047040-5049545 AUGUSTUS gene 1325 2506 0.93 - . g111 ! chr2L_5047040-5049545 AUGUSTUS transcript 1325 2506 0.93 - . g111.t1 --- 2990,2991 ---- ! chr2L_5047040-5049545 AUGUSTUS gene 1325 2506 0.94 - . g111 ! chr2L_5047040-5049545 AUGUSTUS transcript 1325 2506 0.94 - . g111.t1 *************** *** 2993,2995 **** ! chr2L_5047040-5049545 AUGUSTUS intron 1681 1751 0.98 - . transcript_id "g111.t1"; gene_id "g111"; ! chr2L_5047040-5049545 AUGUSTUS CDS 1325 1680 0.96 - 2 transcript_id "g111.t1"; gene_id "g111"; ! chr2L_5047040-5049545 AUGUSTUS CDS 1752 2506 0.95 - 1 transcript_id "g111.t1"; gene_id "g111"; --- 2993,2995 ---- ! chr2L_5047040-5049545 AUGUSTUS intron 1681 1751 0.95 - . transcript_id "g111.t1"; gene_id "g111"; ! chr2L_5047040-5049545 AUGUSTUS CDS 1325 1680 0.95 - 2 transcript_id "g111.t1"; gene_id "g111"; ! chr2L_5047040-5049545 AUGUSTUS CDS 1752 2506 0.94 - 1 transcript_id "g111.t1"; gene_id "g111"; *************** *** 3017,3018 **** ! chr2L_5052910-5054524 AUGUSTUS gene 175 1469 0.69 + . g112 ! chr2L_5052910-5054524 AUGUSTUS transcript 175 1469 0.69 + . g112.t1 --- 3017,3018 ---- ! chr2L_5052910-5054524 AUGUSTUS gene 175 1469 0.79 + . g112 ! chr2L_5052910-5054524 AUGUSTUS transcript 175 1469 0.79 + . g112.t1 *************** *** 3020 **** ! chr2L_5052910-5054524 AUGUSTUS intron 260 329 0.69 + . transcript_id "g112.t1"; gene_id "g112"; --- 3020 ---- ! chr2L_5052910-5054524 AUGUSTUS intron 260 329 0.8 + . transcript_id "g112.t1"; gene_id "g112"; *************** *** 3022 **** ! chr2L_5052910-5054524 AUGUSTUS CDS 175 259 0.69 + 0 transcript_id "g112.t1"; gene_id "g112"; --- 3022 ---- ! chr2L_5052910-5054524 AUGUSTUS CDS 175 259 0.79 + 0 transcript_id "g112.t1"; gene_id "g112"; *************** *** 3044,3045 **** ! chr2L_5101470-5108637 AUGUSTUS gene 1329 2190 0.35 + . g113 ! chr2L_5101470-5108637 AUGUSTUS transcript 1329 2190 0.35 + . g113.t1 --- 3044,3045 ---- ! chr2L_5101470-5108637 AUGUSTUS gene 1329 2190 0.24 + . g113 ! chr2L_5101470-5108637 AUGUSTUS transcript 1329 2190 0.24 + . g113.t1 *************** *** 3047,3049 **** ! chr2L_5101470-5108637 AUGUSTUS intron 2128 2185 0.35 + . transcript_id "g113.t1"; gene_id "g113"; ! chr2L_5101470-5108637 AUGUSTUS CDS 1329 2127 0.82 + 0 transcript_id "g113.t1"; gene_id "g113"; ! chr2L_5101470-5108637 AUGUSTUS CDS 2186 2190 0.35 + 2 transcript_id "g113.t1"; gene_id "g113"; --- 3047,3049 ---- ! chr2L_5101470-5108637 AUGUSTUS intron 2128 2185 0.24 + . transcript_id "g113.t1"; gene_id "g113"; ! chr2L_5101470-5108637 AUGUSTUS CDS 1329 2127 0.91 + 0 transcript_id "g113.t1"; gene_id "g113"; ! chr2L_5101470-5108637 AUGUSTUS CDS 2186 2190 0.24 + 2 transcript_id "g113.t1"; gene_id "g113"; *************** *** 3077,3078 **** ! chr2L_5205439-5215257 AUGUSTUS gene 1870 3781 0.64 + . g114 ! chr2L_5205439-5215257 AUGUSTUS transcript 1870 3781 0.64 + . g114.t1 --- 3077,3078 ---- ! chr2L_5205439-5215257 AUGUSTUS gene 1870 3781 0.72 + . g114 ! chr2L_5205439-5215257 AUGUSTUS transcript 1870 3781 0.72 + . g114.t1 *************** *** 3080,3089 **** ! chr2L_5205439-5215257 AUGUSTUS intron 2064 2219 0.88 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 2359 2419 1 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 2528 2584 0.82 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 3213 3282 0.95 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 3556 3617 0.91 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 1870 2063 0.87 + 0 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 2220 2358 0.96 + 1 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 2420 2527 0.82 + 0 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 2585 3212 0.81 + 0 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 3283 3555 0.92 + 2 transcript_id "g114.t1"; gene_id "g114"; --- 3080,3089 ---- ! chr2L_5205439-5215257 AUGUSTUS intron 2064 2219 0.95 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 2359 2419 0.99 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 2528 2584 0.91 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 3213 3282 0.93 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS intron 3556 3617 0.93 + . transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 1870 2063 0.92 + 0 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 2220 2358 0.98 + 1 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 2420 2527 0.91 + 0 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 2585 3212 0.91 + 0 transcript_id "g114.t1"; gene_id "g114"; ! chr2L_5205439-5215257 AUGUSTUS CDS 3283 3555 0.93 + 2 transcript_id "g114.t1"; gene_id "g114"; *************** *** 3101,3102 **** ! chr2L_5205439-5215257 AUGUSTUS gene 5064 6941 0.56 + . g115 ! chr2L_5205439-5215257 AUGUSTUS transcript 5064 6941 0.56 + . g115.t1 --- 3101,3102 ---- ! chr2L_5205439-5215257 AUGUSTUS gene 5064 6941 0.54 + . g115 ! chr2L_5205439-5215257 AUGUSTUS transcript 5064 6941 0.54 + . g115.t1 *************** *** 3107,3108 **** ! chr2L_5205439-5215257 AUGUSTUS intron 6713 6774 0.68 + . transcript_id "g115.t1"; gene_id "g115"; ! chr2L_5205439-5215257 AUGUSTUS CDS 5064 5257 0.84 + 0 transcript_id "g115.t1"; gene_id "g115"; --- 3107,3108 ---- ! chr2L_5205439-5215257 AUGUSTUS intron 6713 6774 0.65 + . transcript_id "g115.t1"; gene_id "g115"; ! chr2L_5205439-5215257 AUGUSTUS CDS 5064 5257 0.83 + 0 transcript_id "g115.t1"; gene_id "g115"; *************** *** 3111,3112 **** ! chr2L_5205439-5215257 AUGUSTUS CDS 6443 6712 0.68 + 2 transcript_id "g115.t1"; gene_id "g115"; ! chr2L_5205439-5215257 AUGUSTUS CDS 6775 6941 0.68 + 2 transcript_id "g115.t1"; gene_id "g115"; --- 3111,3112 ---- ! chr2L_5205439-5215257 AUGUSTUS CDS 6443 6712 0.65 + 2 transcript_id "g115.t1"; gene_id "g115"; ! chr2L_5205439-5215257 AUGUSTUS CDS 6775 6941 0.65 + 2 transcript_id "g115.t1"; gene_id "g115"; *************** *** 3122,3123 **** ! chr2L_5205439-5215257 AUGUSTUS gene 7051 9115 0.31 - . g116 ! chr2L_5205439-5215257 AUGUSTUS transcript 7051 9115 0.31 - . g116.t1 --- 3122,3123 ---- ! chr2L_5205439-5215257 AUGUSTUS gene 7051 9115 0.29 - . g116 ! chr2L_5205439-5215257 AUGUSTUS transcript 7051 9115 0.29 - . g116.t1 *************** *** 3125,3127 **** ! chr2L_5205439-5215257 AUGUSTUS intron 7225 7594 0.71 - . transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS intron 7895 7949 1 - . transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS intron 8203 8251 1 - . transcript_id "g116.t1"; gene_id "g116"; --- 3125,3127 ---- ! chr2L_5205439-5215257 AUGUSTUS intron 7225 7594 0.69 - . transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS intron 7895 7949 0.99 - . transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS intron 8203 8251 0.99 - . transcript_id "g116.t1"; gene_id "g116"; *************** *** 3130,3133 **** ! chr2L_5205439-5215257 AUGUSTUS CDS 7051 7224 0.9 - 0 transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS CDS 7595 7894 0.71 - 0 transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS CDS 7950 8202 1 - 1 transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS CDS 8252 8345 1 - 2 transcript_id "g116.t1"; gene_id "g116"; --- 3130,3133 ---- ! chr2L_5205439-5215257 AUGUSTUS CDS 7051 7224 0.92 - 0 transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS CDS 7595 7894 0.68 - 0 transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS CDS 7950 8202 0.99 - 1 transcript_id "g116.t1"; gene_id "g116"; ! chr2L_5205439-5215257 AUGUSTUS CDS 8252 8345 0.99 - 2 transcript_id "g116.t1"; gene_id "g116"; *************** *** 3135 **** ! chr2L_5205439-5215257 AUGUSTUS CDS 8879 9115 0.49 - 0 transcript_id "g116.t1"; gene_id "g116"; --- 3135 ---- ! chr2L_5205439-5215257 AUGUSTUS CDS 8879 9115 0.47 - 0 transcript_id "g116.t1"; gene_id "g116"; *************** *** 3167,3171 **** ! chr2L_5267678-5278774 AUGUSTUS gene 1 2624 0.78 + . g117 ! chr2L_5267678-5278774 AUGUSTUS transcript 1 2624 0.78 + . g117.t1 ! chr2L_5267678-5278774 AUGUSTUS intron 428 1683 0.78 + . transcript_id "g117.t1"; gene_id "g117"; ! chr2L_5267678-5278774 AUGUSTUS CDS 1 427 0.79 + 0 transcript_id "g117.t1"; gene_id "g117"; ! chr2L_5267678-5278774 AUGUSTUS CDS 1684 2624 0.98 + 2 transcript_id "g117.t1"; gene_id "g117"; --- 3167,3171 ---- ! chr2L_5267678-5278774 AUGUSTUS gene 1 2624 0.82 + . g117 ! chr2L_5267678-5278774 AUGUSTUS transcript 1 2624 0.82 + . g117.t1 ! chr2L_5267678-5278774 AUGUSTUS intron 428 1683 0.82 + . transcript_id "g117.t1"; gene_id "g117"; ! chr2L_5267678-5278774 AUGUSTUS CDS 1 427 0.82 + 0 transcript_id "g117.t1"; gene_id "g117"; ! chr2L_5267678-5278774 AUGUSTUS CDS 1684 2624 1 + 2 transcript_id "g117.t1"; gene_id "g117"; *************** *** 3181,3182 **** ! chr2L_5267678-5278774 AUGUSTUS gene 5001 10512 0.67 - . g118 ! chr2L_5267678-5278774 AUGUSTUS transcript 5001 10512 0.67 - . g118.t1 --- 3181,3182 ---- ! chr2L_5267678-5278774 AUGUSTUS gene 5001 10512 0.66 - . g118 ! chr2L_5267678-5278774 AUGUSTUS transcript 5001 10512 0.66 - . g118.t1 *************** *** 3186,3189 **** ! chr2L_5267678-5278774 AUGUSTUS intron 5914 6341 0.78 - . transcript_id "g118.t1"; gene_id "g118"; ! chr2L_5267678-5278774 AUGUSTUS intron 8104 8834 1 - . transcript_id "g118.t1"; gene_id "g118"; ! chr2L_5267678-5278774 AUGUSTUS intron 9055 9258 0.99 - . transcript_id "g118.t1"; gene_id "g118"; ! chr2L_5267678-5278774 AUGUSTUS intron 9504 10280 0.87 - . transcript_id "g118.t1"; gene_id "g118"; --- 3186,3189 ---- ! chr2L_5267678-5278774 AUGUSTUS intron 5914 6341 0.84 - . transcript_id "g118.t1"; gene_id "g118"; ! chr2L_5267678-5278774 AUGUSTUS intron 8104 8834 0.97 - . transcript_id "g118.t1"; gene_id "g118"; ! chr2L_5267678-5278774 AUGUSTUS intron 9055 9258 1 - . transcript_id "g118.t1"; gene_id "g118"; ! chr2L_5267678-5278774 AUGUSTUS intron 9504 10280 0.78 - . transcript_id "g118.t1"; gene_id "g118"; *************** *** 3192 **** ! chr2L_5267678-5278774 AUGUSTUS CDS 5484 5913 0.78 - 1 transcript_id "g118.t1"; gene_id "g118"; --- 3192 ---- ! chr2L_5267678-5278774 AUGUSTUS CDS 5484 5913 0.84 - 1 transcript_id "g118.t1"; gene_id "g118"; *************** *** 3194 **** ! chr2L_5267678-5278774 AUGUSTUS CDS 8835 9054 0.99 - 0 transcript_id "g118.t1"; gene_id "g118"; --- 3194 ---- ! chr2L_5267678-5278774 AUGUSTUS CDS 8835 9054 1 - 0 transcript_id "g118.t1"; gene_id "g118"; *************** *** 3196 **** ! chr2L_5267678-5278774 AUGUSTUS CDS 10281 10512 0.87 - 0 transcript_id "g118.t1"; gene_id "g118"; --- 3196 ---- ! chr2L_5267678-5278774 AUGUSTUS CDS 10281 10512 0.78 - 0 transcript_id "g118.t1"; gene_id "g118"; *************** *** 3239,3240 **** ! chr2L_5544869-5549657 AUGUSTUS gene 2947 4626 0.86 + . g120 ! chr2L_5544869-5549657 AUGUSTUS transcript 2947 4626 0.86 + . g120.t1 --- 3239,3240 ---- ! chr2L_5544869-5549657 AUGUSTUS gene 2947 4626 0.92 + . g120 ! chr2L_5544869-5549657 AUGUSTUS transcript 2947 4626 0.92 + . g120.t1 *************** *** 3244 **** ! chr2L_5544869-5549657 AUGUSTUS intron 3842 4575 0.86 + . transcript_id "g120.t1"; gene_id "g120"; --- 3244 ---- ! chr2L_5544869-5549657 AUGUSTUS intron 3842 4575 0.92 + . transcript_id "g120.t1"; gene_id "g120"; *************** *** 3247,3248 **** ! chr2L_5544869-5549657 AUGUSTUS CDS 3300 3841 0.86 + 2 transcript_id "g120.t1"; gene_id "g120"; ! chr2L_5544869-5549657 AUGUSTUS CDS 4576 4626 0.86 + 0 transcript_id "g120.t1"; gene_id "g120"; --- 3247,3248 ---- ! chr2L_5544869-5549657 AUGUSTUS CDS 3300 3841 0.92 + 2 transcript_id "g120.t1"; gene_id "g120"; ! chr2L_5544869-5549657 AUGUSTUS CDS 4576 4626 0.92 + 0 transcript_id "g120.t1"; gene_id "g120"; *************** *** 3266,3267 **** ! chr2L_5663949-5675679 AUGUSTUS gene 5001 6731 0.53 + . g121 ! chr2L_5663949-5675679 AUGUSTUS transcript 5001 6731 0.53 + . g121.t1 --- 3266,3267 ---- ! chr2L_5663949-5675679 AUGUSTUS gene 5001 6731 0.48 + . g121 ! chr2L_5663949-5675679 AUGUSTUS transcript 5001 6731 0.48 + . g121.t1 *************** *** 3269 **** ! chr2L_5663949-5675679 AUGUSTUS CDS 5001 6731 0.53 + 0 transcript_id "g121.t1"; gene_id "g121"; --- 3269 ---- ! chr2L_5663949-5675679 AUGUSTUS CDS 5001 6731 0.48 + 0 transcript_id "g121.t1"; gene_id "g121"; *************** *** 3293,3294 **** ! chr2L_5795870-5802205 AUGUSTUS gene 5001 6017 1 - . g122 ! chr2L_5795870-5802205 AUGUSTUS transcript 5001 6017 1 - . g122.t1 --- 3293,3294 ---- ! chr2L_5795870-5802205 AUGUSTUS gene 5001 6017 0.98 - . g122 ! chr2L_5795870-5802205 AUGUSTUS transcript 5001 6017 0.98 - . g122.t1 *************** *** 3296 **** ! chr2L_5795870-5802205 AUGUSTUS intron 5740 5802 1 - . transcript_id "g122.t1"; gene_id "g122"; --- 3296 ---- ! chr2L_5795870-5802205 AUGUSTUS intron 5740 5802 0.98 - . transcript_id "g122.t1"; gene_id "g122"; *************** *** 3298 **** ! chr2L_5795870-5802205 AUGUSTUS CDS 5803 6017 1 - 0 transcript_id "g122.t1"; gene_id "g122"; --- 3298 ---- ! chr2L_5795870-5802205 AUGUSTUS CDS 5803 6017 0.98 - 0 transcript_id "g122.t1"; gene_id "g122"; *************** *** 3328,3330 **** ! chr2L_5959972-5964901 AUGUSTUS gene 1 288 0.83 - . g123 ! chr2L_5959972-5964901 AUGUSTUS transcript 1 288 0.83 - . g123.t1 ! chr2L_5959972-5964901 AUGUSTUS CDS 1 288 0.83 - 0 transcript_id "g123.t1"; gene_id "g123"; --- 3328,3330 ---- ! chr2L_5959972-5964901 AUGUSTUS gene 1 288 0.91 - . g123 ! chr2L_5959972-5964901 AUGUSTUS transcript 1 288 0.91 - . g123.t1 ! chr2L_5959972-5964901 AUGUSTUS CDS 1 288 0.91 - 0 transcript_id "g123.t1"; gene_id "g123"; *************** *** 3360,3361 **** ! chr2L_6043110-6053643 AUGUSTUS gene 1 2408 0.87 - . g125 ! chr2L_6043110-6053643 AUGUSTUS transcript 1 2408 0.87 - . g125.t1 --- 3360,3361 ---- ! chr2L_6043110-6053643 AUGUSTUS gene 1 2408 0.88 - . g125 ! chr2L_6043110-6053643 AUGUSTUS transcript 1 2408 0.88 - . g125.t1 *************** *** 3363,3364 **** ! chr2L_6043110-6053643 AUGUSTUS CDS 1 1242 0.97 - 2 transcript_id "g125.t1"; gene_id "g125"; ! chr2L_6043110-6053643 AUGUSTUS CDS 1319 2408 0.9 - 0 transcript_id "g125.t1"; gene_id "g125"; --- 3363,3364 ---- ! chr2L_6043110-6053643 AUGUSTUS CDS 1 1242 0.99 - 2 transcript_id "g125.t1"; gene_id "g125"; ! chr2L_6043110-6053643 AUGUSTUS CDS 1319 2408 0.89 - 0 transcript_id "g125.t1"; gene_id "g125"; *************** *** 3381,3383 **** ! chr2L_6043110-6053643 AUGUSTUS intron 4672 5020 0.88 - . transcript_id "g126.t1"; gene_id "g126"; ! chr2L_6043110-6053643 AUGUSTUS CDS 3944 4671 0.86 - 2 transcript_id "g126.t1"; gene_id "g126"; ! chr2L_6043110-6053643 AUGUSTUS CDS 5021 5534 0.88 - 0 transcript_id "g126.t1"; gene_id "g126"; --- 3381,3383 ---- ! chr2L_6043110-6053643 AUGUSTUS intron 4672 5020 0.89 - . transcript_id "g126.t1"; gene_id "g126"; ! chr2L_6043110-6053643 AUGUSTUS CDS 3944 4671 0.87 - 2 transcript_id "g126.t1"; gene_id "g126"; ! chr2L_6043110-6053643 AUGUSTUS CDS 5021 5534 0.9 - 0 transcript_id "g126.t1"; gene_id "g126"; *************** *** 3393,3394 **** ! chr2L_6043110-6053643 AUGUSTUS gene 5768 7239 0.86 + . g127 ! chr2L_6043110-6053643 AUGUSTUS transcript 5768 7239 0.86 + . g127.t1 --- 3393,3394 ---- ! chr2L_6043110-6053643 AUGUSTUS gene 5768 7239 0.93 + . g127 ! chr2L_6043110-6053643 AUGUSTUS transcript 5768 7239 0.93 + . g127.t1 *************** *** 3398 **** ! chr2L_6043110-6053643 AUGUSTUS intron 6524 6964 0.9 + . transcript_id "g127.t1"; gene_id "g127"; --- 3398 ---- ! chr2L_6043110-6053643 AUGUSTUS intron 6524 6964 0.95 + . transcript_id "g127.t1"; gene_id "g127"; *************** *** 3402 **** ! chr2L_6043110-6053643 AUGUSTUS CDS 6965 7239 0.86 + 2 transcript_id "g127.t1"; gene_id "g127"; --- 3402 ---- ! chr2L_6043110-6053643 AUGUSTUS CDS 6965 7239 0.93 + 2 transcript_id "g127.t1"; gene_id "g127"; *************** *** 3411,3412 **** ! chr2L_6043110-6053643 AUGUSTUS gene 8569 10149 0.96 + . g128 ! chr2L_6043110-6053643 AUGUSTUS transcript 8569 10149 0.96 + . g128.t1 --- 3411,3412 ---- ! chr2L_6043110-6053643 AUGUSTUS gene 8569 10149 0.98 + . g128 ! chr2L_6043110-6053643 AUGUSTUS transcript 8569 10149 0.98 + . g128.t1 *************** *** 3416 **** ! chr2L_6043110-6053643 AUGUSTUS CDS 8569 8913 0.96 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 3416 ---- ! chr2L_6043110-6053643 AUGUSTUS CDS 8569 8913 0.98 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 3450,3451 **** ! chr2L_6363141-6371803 AUGUSTUS gene 5001 6959 0.99 + . g129 ! chr2L_6363141-6371803 AUGUSTUS transcript 5001 6959 0.99 + . g129.t1 --- 3450,3451 ---- ! chr2L_6363141-6371803 AUGUSTUS gene 5001 6959 1 + . g129 ! chr2L_6363141-6371803 AUGUSTUS transcript 5001 6959 1 + . g129.t1 *************** *** 3453 **** ! chr2L_6363141-6371803 AUGUSTUS CDS 5001 6959 0.99 + 0 transcript_id "g129.t1"; gene_id "g129"; --- 3453 ---- ! chr2L_6363141-6371803 AUGUSTUS CDS 5001 6959 1 + 0 transcript_id "g129.t1"; gene_id "g129"; *************** *** 3479,3480 **** ! chr2L_6463845-6474245 AUGUSTUS gene 2680 3764 0.51 - . g130 ! chr2L_6463845-6474245 AUGUSTUS transcript 2680 3764 0.51 - . g130.t1 --- 3479,3480 ---- ! chr2L_6463845-6474245 AUGUSTUS gene 2680 3764 0.6 - . g130 ! chr2L_6463845-6474245 AUGUSTUS transcript 2680 3764 0.6 - . g130.t1 *************** *** 3483 **** ! chr2L_6463845-6474245 AUGUSTUS intron 3496 3554 0.92 - . transcript_id "g130.t1"; gene_id "g130"; --- 3483 ---- ! chr2L_6463845-6474245 AUGUSTUS intron 3496 3554 0.93 - . transcript_id "g130.t1"; gene_id "g130"; *************** *** 3485,3486 **** ! chr2L_6463845-6474245 AUGUSTUS CDS 2975 3495 0.92 - 0 transcript_id "g130.t1"; gene_id "g130"; ! chr2L_6463845-6474245 AUGUSTUS CDS 3555 3764 0.55 - 0 transcript_id "g130.t1"; gene_id "g130"; --- 3485,3486 ---- ! chr2L_6463845-6474245 AUGUSTUS CDS 2975 3495 0.93 - 0 transcript_id "g130.t1"; gene_id "g130"; ! chr2L_6463845-6474245 AUGUSTUS CDS 3555 3764 0.64 - 0 transcript_id "g130.t1"; gene_id "g130"; *************** *** 3527,3531 **** ! chr2L_6478973-6487353 AUGUSTUS gene 1 8137 0.56 + . g132 ! chr2L_6478973-6487353 AUGUSTUS transcript 1 8137 0.56 + . g132.t1 ! chr2L_6478973-6487353 AUGUSTUS intron 1 3010 0.57 + . transcript_id "g132.t1"; gene_id "g132"; ! chr2L_6478973-6487353 AUGUSTUS intron 7140 7199 0.98 + . transcript_id "g132.t1"; gene_id "g132"; ! chr2L_6478973-6487353 AUGUSTUS intron 7381 7518 0.99 + . transcript_id "g132.t1"; gene_id "g132"; --- 3527,3531 ---- ! chr2L_6478973-6487353 AUGUSTUS gene 1 8137 0.53 + . g132 ! chr2L_6478973-6487353 AUGUSTUS transcript 1 8137 0.53 + . g132.t1 ! chr2L_6478973-6487353 AUGUSTUS intron 1 3010 0.53 + . transcript_id "g132.t1"; gene_id "g132"; ! chr2L_6478973-6487353 AUGUSTUS intron 7140 7199 0.99 + . transcript_id "g132.t1"; gene_id "g132"; ! chr2L_6478973-6487353 AUGUSTUS intron 7381 7518 1 + . transcript_id "g132.t1"; gene_id "g132"; *************** *** 3533 **** ! chr2L_6478973-6487353 AUGUSTUS CDS 7200 7380 0.98 + 2 transcript_id "g132.t1"; gene_id "g132"; --- 3533 ---- ! chr2L_6478973-6487353 AUGUSTUS CDS 7200 7380 0.99 + 2 transcript_id "g132.t1"; gene_id "g132"; *************** *** 3566,3567 **** ! chr2L_6557697-6564621 AUGUSTUS gene 207 1349 0.89 + . g133 ! chr2L_6557697-6564621 AUGUSTUS transcript 207 1349 0.89 + . g133.t1 --- 3566,3567 ---- ! chr2L_6557697-6564621 AUGUSTUS gene 207 1349 0.97 + . g133 ! chr2L_6557697-6564621 AUGUSTUS transcript 207 1349 0.97 + . g133.t1 *************** *** 3569 **** ! chr2L_6557697-6564621 AUGUSTUS intron 289 721 0.97 + . transcript_id "g133.t1"; gene_id "g133"; --- 3569 ---- ! chr2L_6557697-6564621 AUGUSTUS intron 289 721 0.99 + . transcript_id "g133.t1"; gene_id "g133"; *************** *** 3571 **** ! chr2L_6557697-6564621 AUGUSTUS CDS 207 288 0.96 + 0 transcript_id "g133.t1"; gene_id "g133"; --- 3571 ---- ! chr2L_6557697-6564621 AUGUSTUS CDS 207 288 0.99 + 0 transcript_id "g133.t1"; gene_id "g133"; *************** *** 3573 **** ! chr2L_6557697-6564621 AUGUSTUS CDS 1243 1349 0.93 + 2 transcript_id "g133.t1"; gene_id "g133"; --- 3573 ---- ! chr2L_6557697-6564621 AUGUSTUS CDS 1243 1349 0.98 + 2 transcript_id "g133.t1"; gene_id "g133"; *************** *** 3580,3581 **** ! chr2L_6557697-6564621 AUGUSTUS gene 1835 2355 0.9 + . g134 ! chr2L_6557697-6564621 AUGUSTUS transcript 1835 2355 0.9 + . g134.t1 --- 3580,3581 ---- ! chr2L_6557697-6564621 AUGUSTUS gene 1835 2355 0.93 + . g134 ! chr2L_6557697-6564621 AUGUSTUS transcript 1835 2355 0.93 + . g134.t1 *************** *** 3583,3585 **** ! chr2L_6557697-6564621 AUGUSTUS intron 2016 2071 0.96 + . transcript_id "g134.t1"; gene_id "g134"; ! chr2L_6557697-6564621 AUGUSTUS CDS 1835 2015 0.9 + 0 transcript_id "g134.t1"; gene_id "g134"; ! chr2L_6557697-6564621 AUGUSTUS CDS 2072 2355 0.96 + 2 transcript_id "g134.t1"; gene_id "g134"; --- 3583,3585 ---- ! chr2L_6557697-6564621 AUGUSTUS intron 2016 2071 0.94 + . transcript_id "g134.t1"; gene_id "g134"; ! chr2L_6557697-6564621 AUGUSTUS CDS 1835 2015 0.93 + 0 transcript_id "g134.t1"; gene_id "g134"; ! chr2L_6557697-6564621 AUGUSTUS CDS 2072 2355 0.94 + 2 transcript_id "g134.t1"; gene_id "g134"; *************** *** 3592,3593 **** ! chr2L_6557697-6564621 AUGUSTUS gene 2477 3871 0.91 - . g135 ! chr2L_6557697-6564621 AUGUSTUS transcript 2477 3871 0.91 - . g135.t1 --- 3592,3593 ---- ! chr2L_6557697-6564621 AUGUSTUS gene 2477 3871 0.85 - . g135 ! chr2L_6557697-6564621 AUGUSTUS transcript 2477 3871 0.85 - . g135.t1 *************** *** 3595 **** ! chr2L_6557697-6564621 AUGUSTUS CDS 2477 3871 0.91 - 0 transcript_id "g135.t1"; gene_id "g135"; --- 3595 ---- ! chr2L_6557697-6564621 AUGUSTUS CDS 2477 3871 0.85 - 0 transcript_id "g135.t1"; gene_id "g135"; *************** *** 3638,3639 **** ! chr2L_6788527-6797487 AUGUSTUS gene 2113 4843 0.37 - . g137 ! chr2L_6788527-6797487 AUGUSTUS transcript 2113 4843 0.37 - . g137.t1 --- 3638,3639 ---- ! chr2L_6788527-6797487 AUGUSTUS gene 2113 4843 0.48 - . g137 ! chr2L_6788527-6797487 AUGUSTUS transcript 2113 4843 0.48 - . g137.t1 *************** *** 3644 **** ! chr2L_6788527-6797487 AUGUSTUS intron 3112 3174 0.4 - . transcript_id "g137.t1"; gene_id "g137"; --- 3644 ---- ! chr2L_6788527-6797487 AUGUSTUS intron 3112 3174 0.54 - . transcript_id "g137.t1"; gene_id "g137"; *************** *** 3649 **** ! chr2L_6788527-6797487 AUGUSTUS CDS 2992 3111 0.4 - 2 transcript_id "g137.t1"; gene_id "g137"; --- 3649 ---- ! chr2L_6788527-6797487 AUGUSTUS CDS 2992 3111 0.54 - 2 transcript_id "g137.t1"; gene_id "g137"; *************** *** 3651 **** ! chr2L_6788527-6797487 AUGUSTUS CDS 4702 4843 0.98 - 0 transcript_id "g137.t1"; gene_id "g137"; --- 3651 ---- ! chr2L_6788527-6797487 AUGUSTUS CDS 4702 4843 0.94 - 0 transcript_id "g137.t1"; gene_id "g137"; *************** *** 3660,3661 **** ! chr2L_6788527-6797487 AUGUSTUS gene 7377 8961 0.39 - . g138 ! chr2L_6788527-6797487 AUGUSTUS transcript 7377 8961 0.39 - . g138.t1 --- 3660,3661 ---- ! chr2L_6788527-6797487 AUGUSTUS gene 7377 8961 0.3 - . g138 ! chr2L_6788527-6797487 AUGUSTUS transcript 7377 8961 0.3 - . g138.t1 *************** *** 3663,3666 **** ! chr2L_6788527-6797487 AUGUSTUS intron 7547 7810 0.76 - . transcript_id "g138.t1"; gene_id "g138"; ! chr2L_6788527-6797487 AUGUSTUS intron 8191 8961 0.54 - . transcript_id "g138.t1"; gene_id "g138"; ! chr2L_6788527-6797487 AUGUSTUS CDS 7377 7546 0.78 - 2 transcript_id "g138.t1"; gene_id "g138"; ! chr2L_6788527-6797487 AUGUSTUS CDS 7811 8190 0.75 - 1 transcript_id "g138.t1"; gene_id "g138"; --- 3663,3666 ---- ! chr2L_6788527-6797487 AUGUSTUS intron 7547 7810 0.57 - . transcript_id "g138.t1"; gene_id "g138"; ! chr2L_6788527-6797487 AUGUSTUS intron 8191 8961 0.56 - . transcript_id "g138.t1"; gene_id "g138"; ! chr2L_6788527-6797487 AUGUSTUS CDS 7377 7546 0.59 - 2 transcript_id "g138.t1"; gene_id "g138"; ! chr2L_6788527-6797487 AUGUSTUS CDS 7811 8190 0.74 - 1 transcript_id "g138.t1"; gene_id "g138"; *************** *** 3709,3710 **** ! chr2L_6948895-6952350 AUGUSTUS gene 1645 3170 0.82 + . g140 ! chr2L_6948895-6952350 AUGUSTUS transcript 1645 3170 0.82 + . g140.t1 --- 3709,3710 ---- ! chr2L_6948895-6952350 AUGUSTUS gene 1645 3170 0.81 + . g140 ! chr2L_6948895-6952350 AUGUSTUS transcript 1645 3170 0.81 + . g140.t1 *************** *** 3716 **** ! chr2L_6948895-6952350 AUGUSTUS CDS 1645 1715 0.82 + 0 transcript_id "g140.t1"; gene_id "g140"; --- 3716 ---- ! chr2L_6948895-6952350 AUGUSTUS CDS 1645 1715 0.84 + 0 transcript_id "g140.t1"; gene_id "g140"; *************** *** 3720 **** ! chr2L_6948895-6952350 AUGUSTUS CDS 2733 3170 0.99 + 0 transcript_id "g140.t1"; gene_id "g140"; --- 3720 ---- ! chr2L_6948895-6952350 AUGUSTUS CDS 2733 3170 0.97 + 0 transcript_id "g140.t1"; gene_id "g140"; *************** *** 3766,3767 **** ! chr2L_6952351-6956985 AUGUSTUS gene 2235 4522 0.85 - . g142 ! chr2L_6952351-6956985 AUGUSTUS transcript 2235 4522 0.85 - . g142.t1 --- 3766,3767 ---- ! chr2L_6952351-6956985 AUGUSTUS gene 2235 4522 0.78 - . g142 ! chr2L_6952351-6956985 AUGUSTUS transcript 2235 4522 0.78 - . g142.t1 *************** *** 3771,3773 **** ! chr2L_6952351-6956985 AUGUSTUS CDS 2235 2852 0.88 - 0 transcript_id "g142.t1"; gene_id "g142"; ! chr2L_6952351-6956985 AUGUSTUS CDS 2907 3869 1 - 0 transcript_id "g142.t1"; gene_id "g142"; ! chr2L_6952351-6956985 AUGUSTUS CDS 4268 4522 0.97 - 0 transcript_id "g142.t1"; gene_id "g142"; --- 3771,3773 ---- ! chr2L_6952351-6956985 AUGUSTUS CDS 2235 2852 0.8 - 0 transcript_id "g142.t1"; gene_id "g142"; ! chr2L_6952351-6956985 AUGUSTUS CDS 2907 3869 0.99 - 0 transcript_id "g142.t1"; gene_id "g142"; ! chr2L_6952351-6956985 AUGUSTUS CDS 4268 4522 0.98 - 0 transcript_id "g142.t1"; gene_id "g142"; *************** *** 3807,3808 **** ! chr2L_7424581-7430272 AUGUSTUS gene 2621 5292 0.41 + . g143 ! chr2L_7424581-7430272 AUGUSTUS transcript 2621 5292 0.41 + . g143.t1 --- 3807,3808 ---- ! chr2L_7424581-7430272 AUGUSTUS gene 2621 5292 0.53 + . g143 ! chr2L_7424581-7430272 AUGUSTUS transcript 2621 5292 0.53 + . g143.t1 *************** *** 3810,3812 **** ! chr2L_7424581-7430272 AUGUSTUS intron 2782 3466 0.91 + . transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS intron 3637 3700 1 + . transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS intron 4100 4345 0.47 + . transcript_id "g143.t1"; gene_id "g143"; --- 3810,3812 ---- ! chr2L_7424581-7430272 AUGUSTUS intron 2782 3466 0.92 + . transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS intron 3637 3700 0.99 + . transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS intron 4100 4345 0.58 + . transcript_id "g143.t1"; gene_id "g143"; *************** *** 3816,3819 **** ! chr2L_7424581-7430272 AUGUSTUS CDS 2621 2781 0.93 + 0 transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS CDS 3467 3636 0.98 + 1 transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS CDS 3701 4099 0.96 + 2 transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS CDS 4346 4524 0.5 + 2 transcript_id "g143.t1"; gene_id "g143"; --- 3816,3819 ---- ! chr2L_7424581-7430272 AUGUSTUS CDS 2621 2781 0.96 + 0 transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS CDS 3467 3636 0.95 + 1 transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS CDS 3701 4099 0.94 + 2 transcript_id "g143.t1"; gene_id "g143"; ! chr2L_7424581-7430272 AUGUSTUS CDS 4346 4524 0.61 + 2 transcript_id "g143.t1"; gene_id "g143"; *************** *** 3822 **** ! chr2L_7424581-7430272 AUGUSTUS CDS 5163 5292 0.99 + 1 transcript_id "g143.t1"; gene_id "g143"; --- 3822 ---- ! chr2L_7424581-7430272 AUGUSTUS CDS 5163 5292 1 + 1 transcript_id "g143.t1"; gene_id "g143"; *************** *** 3849,3850 **** ! chr2L_7498178-7534396 AUGUSTUS gene 848 4333 0.91 - . g144 ! chr2L_7498178-7534396 AUGUSTUS transcript 848 4333 0.91 - . g144.t1 --- 3849,3850 ---- ! chr2L_7498178-7534396 AUGUSTUS gene 848 4333 0.93 - . g144 ! chr2L_7498178-7534396 AUGUSTUS transcript 848 4333 0.93 - . g144.t1 *************** *** 3854 **** ! chr2L_7498178-7534396 AUGUSTUS intron 3349 4300 0.91 - . transcript_id "g144.t1"; gene_id "g144"; --- 3854 ---- ! chr2L_7498178-7534396 AUGUSTUS intron 3349 4300 0.93 - . transcript_id "g144.t1"; gene_id "g144"; *************** *** 3858 **** ! chr2L_7498178-7534396 AUGUSTUS CDS 4301 4333 0.91 - 0 transcript_id "g144.t1"; gene_id "g144"; --- 3858 ---- ! chr2L_7498178-7534396 AUGUSTUS CDS 4301 4333 0.93 - 0 transcript_id "g144.t1"; gene_id "g144"; *************** *** 3872,3873 **** ! chr2L_7498178-7534396 AUGUSTUS gene 31007 31219 0.86 - . g145 ! chr2L_7498178-7534396 AUGUSTUS transcript 31007 31219 0.86 - . g145.t1 --- 3872,3873 ---- ! chr2L_7498178-7534396 AUGUSTUS gene 31007 31219 0.93 - . g145 ! chr2L_7498178-7534396 AUGUSTUS transcript 31007 31219 0.93 - . g145.t1 *************** *** 3875 **** ! chr2L_7498178-7534396 AUGUSTUS CDS 31007 31219 0.86 - 0 transcript_id "g145.t1"; gene_id "g145"; --- 3875 ---- ! chr2L_7498178-7534396 AUGUSTUS CDS 31007 31219 0.93 - 0 transcript_id "g145.t1"; gene_id "g145"; *************** *** 3905,3906 **** ! chr2L_7693289-7706421 AUGUSTUS gene 620 8133 0.48 - . g146 ! chr2L_7693289-7706421 AUGUSTUS transcript 620 8133 0.48 - . g146.t1 --- 3905,3906 ---- ! chr2L_7693289-7706421 AUGUSTUS gene 620 8133 0.5 - . g146 ! chr2L_7693289-7706421 AUGUSTUS transcript 620 8133 0.5 - . g146.t1 *************** *** 3909,3911 **** ! chr2L_7693289-7706421 AUGUSTUS intron 2684 2739 0.97 - . transcript_id "g146.t1"; gene_id "g146"; ! chr2L_7693289-7706421 AUGUSTUS intron 2919 5085 0.97 - . transcript_id "g146.t1"; gene_id "g146"; ! chr2L_7693289-7706421 AUGUSTUS intron 5180 5436 0.84 - . transcript_id "g146.t1"; gene_id "g146"; --- 3909,3911 ---- ! chr2L_7693289-7706421 AUGUSTUS intron 2684 2739 0.96 - . transcript_id "g146.t1"; gene_id "g146"; ! chr2L_7693289-7706421 AUGUSTUS intron 2919 5085 0.95 - . transcript_id "g146.t1"; gene_id "g146"; ! chr2L_7693289-7706421 AUGUSTUS intron 5180 5436 0.81 - . transcript_id "g146.t1"; gene_id "g146"; *************** *** 3913 **** ! chr2L_7693289-7706421 AUGUSTUS intron 6029 6090 0.57 - . transcript_id "g146.t1"; gene_id "g146"; --- 3913 ---- ! chr2L_7693289-7706421 AUGUSTUS intron 6029 6090 0.61 - . transcript_id "g146.t1"; gene_id "g146"; *************** *** 3917,3918 **** ! chr2L_7693289-7706421 AUGUSTUS CDS 2740 2918 0.97 - 1 transcript_id "g146.t1"; gene_id "g146"; ! chr2L_7693289-7706421 AUGUSTUS CDS 5086 5179 0.84 - 2 transcript_id "g146.t1"; gene_id "g146"; --- 3917,3918 ---- ! chr2L_7693289-7706421 AUGUSTUS CDS 2740 2918 0.96 - 1 transcript_id "g146.t1"; gene_id "g146"; ! chr2L_7693289-7706421 AUGUSTUS CDS 5086 5179 0.81 - 2 transcript_id "g146.t1"; gene_id "g146"; *************** *** 3920 **** ! chr2L_7693289-7706421 AUGUSTUS CDS 5767 6028 0.57 - 1 transcript_id "g146.t1"; gene_id "g146"; --- 3920 ---- ! chr2L_7693289-7706421 AUGUSTUS CDS 5767 6028 0.61 - 1 transcript_id "g146.t1"; gene_id "g146"; *************** *** 3942,3943 **** ! chr2L_7693289-7706421 AUGUSTUS gene 12185 12835 0.23 + . g147 ! chr2L_7693289-7706421 AUGUSTUS transcript 12185 12835 0.23 + . g147.t1 --- 3942,3943 ---- ! chr2L_7693289-7706421 AUGUSTUS gene 12185 12835 0.22 + . g147 ! chr2L_7693289-7706421 AUGUSTUS transcript 12185 12835 0.22 + . g147.t1 *************** *** 3945 **** ! chr2L_7693289-7706421 AUGUSTUS intron 12211 12375 0.23 + . transcript_id "g147.t1"; gene_id "g147"; --- 3945 ---- ! chr2L_7693289-7706421 AUGUSTUS intron 12211 12375 0.22 + . transcript_id "g147.t1"; gene_id "g147"; *************** *** 3947 **** ! chr2L_7693289-7706421 AUGUSTUS CDS 12376 12835 0.28 + 1 transcript_id "g147.t1"; gene_id "g147"; --- 3947 ---- ! chr2L_7693289-7706421 AUGUSTUS CDS 12376 12835 0.33 + 1 transcript_id "g147.t1"; gene_id "g147"; *************** *** 3969 **** ! chr2L_7775118-7782118 AUGUSTUS CDS 868 2868 0.98 - 0 transcript_id "g148.t1"; gene_id "g148"; --- 3969 ---- ! chr2L_7775118-7782118 AUGUSTUS CDS 868 2868 0.99 - 0 transcript_id "g148.t1"; gene_id "g148"; *************** *** 3982,3983 **** ! chr2L_7775118-7782118 AUGUSTUS gene 5001 6128 0.99 + . g149 ! chr2L_7775118-7782118 AUGUSTUS transcript 5001 6128 0.99 + . g149.t1 --- 3982,3983 ---- ! chr2L_7775118-7782118 AUGUSTUS gene 5001 6128 0.96 + . g149 ! chr2L_7775118-7782118 AUGUSTUS transcript 5001 6128 0.96 + . g149.t1 *************** *** 3986,3987 **** ! chr2L_7775118-7782118 AUGUSTUS CDS 5001 5574 0.99 + 0 transcript_id "g149.t1"; gene_id "g149"; ! chr2L_7775118-7782118 AUGUSTUS CDS 5644 6128 1 + 2 transcript_id "g149.t1"; gene_id "g149"; --- 3986,3987 ---- ! chr2L_7775118-7782118 AUGUSTUS CDS 5001 5574 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; ! chr2L_7775118-7782118 AUGUSTUS CDS 5644 6128 0.98 + 2 transcript_id "g149.t1"; gene_id "g149"; *************** *** 3996,3997 **** ! chr2L_7775118-7782118 AUGUSTUS gene 6518 6751 0.91 + . g150 ! chr2L_7775118-7782118 AUGUSTUS transcript 6518 6751 0.91 + . g150.t1 --- 3996,3997 ---- ! chr2L_7775118-7782118 AUGUSTUS gene 6518 6751 0.96 + . g150 ! chr2L_7775118-7782118 AUGUSTUS transcript 6518 6751 0.96 + . g150.t1 *************** *** 3999 **** ! chr2L_7775118-7782118 AUGUSTUS CDS 6518 6751 0.91 + 0 transcript_id "g150.t1"; gene_id "g150"; --- 3999 ---- ! chr2L_7775118-7782118 AUGUSTUS CDS 6518 6751 0.96 + 0 transcript_id "g150.t1"; gene_id "g150"; *************** *** 4021,4023 **** ! chr2L_7791930-7800999 AUGUSTUS gene 1 3905 0.89 - . g151 ! chr2L_7791930-7800999 AUGUSTUS transcript 1 3905 0.89 - . g151.t1 ! chr2L_7791930-7800999 AUGUSTUS intron 1 9 0.92 - . transcript_id "g151.t1"; gene_id "g151"; --- 4021,4023 ---- ! chr2L_7791930-7800999 AUGUSTUS gene 1 3905 0.93 - . g151 ! chr2L_7791930-7800999 AUGUSTUS transcript 1 3905 0.93 - . g151.t1 ! chr2L_7791930-7800999 AUGUSTUS intron 1 9 0.94 - . transcript_id "g151.t1"; gene_id "g151"; *************** *** 4027,4028 **** ! chr2L_7791930-7800999 AUGUSTUS intron 2598 2662 0.98 - . transcript_id "g151.t1"; gene_id "g151"; ! chr2L_7791930-7800999 AUGUSTUS intron 2840 3580 0.97 - . transcript_id "g151.t1"; gene_id "g151"; --- 4027,4028 ---- ! chr2L_7791930-7800999 AUGUSTUS intron 2598 2662 0.99 - . transcript_id "g151.t1"; gene_id "g151"; ! chr2L_7791930-7800999 AUGUSTUS intron 2840 3580 0.99 - . transcript_id "g151.t1"; gene_id "g151"; *************** *** 4030 **** ! chr2L_7791930-7800999 AUGUSTUS CDS 10 186 0.92 - 2 transcript_id "g151.t1"; gene_id "g151"; --- 4030 ---- ! chr2L_7791930-7800999 AUGUSTUS CDS 10 186 0.94 - 2 transcript_id "g151.t1"; gene_id "g151"; *************** *** 4034 **** ! chr2L_7791930-7800999 AUGUSTUS CDS 2663 2839 0.97 - 0 transcript_id "g151.t1"; gene_id "g151"; --- 4034 ---- ! chr2L_7791930-7800999 AUGUSTUS CDS 2663 2839 0.99 - 0 transcript_id "g151.t1"; gene_id "g151"; *************** *** 4054 **** ! chr2L_7791930-7800999 AUGUSTUS intron 5398 5467 1 - . transcript_id "g152.t1"; gene_id "g152"; --- 4054 ---- ! chr2L_7791930-7800999 AUGUSTUS intron 5398 5467 0.99 - . transcript_id "g152.t1"; gene_id "g152"; *************** *** 4056,4059 **** ! chr2L_7791930-7800999 AUGUSTUS intron 6686 7379 0.87 - . transcript_id "g152.t1"; gene_id "g152"; ! chr2L_7791930-7800999 AUGUSTUS CDS 5001 5397 1 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chr2L_7791930-7800999 AUGUSTUS CDS 5468 5803 1 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chr2L_7791930-7800999 AUGUSTUS CDS 6234 6685 0.87 - 0 transcript_id "g152.t1"; gene_id "g152"; --- 4056,4059 ---- ! chr2L_7791930-7800999 AUGUSTUS intron 6686 7379 0.88 - . transcript_id "g152.t1"; gene_id "g152"; ! chr2L_7791930-7800999 AUGUSTUS CDS 5001 5397 0.99 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chr2L_7791930-7800999 AUGUSTUS CDS 5468 5803 0.99 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chr2L_7791930-7800999 AUGUSTUS CDS 6234 6685 0.88 - 0 transcript_id "g152.t1"; gene_id "g152"; *************** *** 4070,4071 **** ! chr2L_7791930-7800999 AUGUSTUS gene 8875 9070 0.43 + . g153 ! chr2L_7791930-7800999 AUGUSTUS transcript 8875 9070 0.43 + . g153.t1 --- 4070,4071 ---- ! chr2L_7791930-7800999 AUGUSTUS gene 8875 9070 0.31 + . g153 ! chr2L_7791930-7800999 AUGUSTUS transcript 8875 9070 0.31 + . g153.t1 *************** *** 4073 **** ! chr2L_7791930-7800999 AUGUSTUS CDS 8875 9070 0.43 + 0 transcript_id "g153.t1"; gene_id "g153"; --- 4073 ---- ! chr2L_7791930-7800999 AUGUSTUS CDS 8875 9070 0.31 + 0 transcript_id "g153.t1"; gene_id "g153"; *************** *** 4098,4100 **** ! chr2L_7801000-7810996 AUGUSTUS gene 1 512 0.98 + . g154 ! chr2L_7801000-7810996 AUGUSTUS transcript 1 512 0.98 + . g154.t1 ! chr2L_7801000-7810996 AUGUSTUS CDS 1 512 0.98 + 2 transcript_id "g154.t1"; gene_id "g154"; --- 4098,4100 ---- ! chr2L_7801000-7810996 AUGUSTUS gene 1 512 0.97 + . g154 ! chr2L_7801000-7810996 AUGUSTUS transcript 1 512 0.97 + . g154.t1 ! chr2L_7801000-7810996 AUGUSTUS CDS 1 512 0.97 + 2 transcript_id "g154.t1"; gene_id "g154"; *************** *** 4152,4153 **** ! chr2L_8007788-8014459 AUGUSTUS gene 655 1672 0.89 - . g156 ! chr2L_8007788-8014459 AUGUSTUS transcript 655 1672 0.89 - . g156.t1 --- 4152,4153 ---- ! chr2L_8007788-8014459 AUGUSTUS gene 655 1672 0.85 - . g156 ! chr2L_8007788-8014459 AUGUSTUS transcript 655 1672 0.85 - . g156.t1 *************** *** 4155 **** ! chr2L_8007788-8014459 AUGUSTUS intron 866 1160 0.89 - . transcript_id "g156.t1"; gene_id "g156"; --- 4155 ---- ! chr2L_8007788-8014459 AUGUSTUS intron 866 1160 0.85 - . transcript_id "g156.t1"; gene_id "g156"; *************** *** 4158 **** ! chr2L_8007788-8014459 AUGUSTUS CDS 1161 1408 0.94 - 0 transcript_id "g156.t1"; gene_id "g156"; --- 4158 ---- ! chr2L_8007788-8014459 AUGUSTUS CDS 1161 1408 0.9 - 0 transcript_id "g156.t1"; gene_id "g156"; ====================================================================== FAIL: test_ab_initio_prediction (__main__.TestAugustus) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 480, in test_ab_initio_prediction self.assertEqualFolders(reffolder, resfolder) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders self.assertEqual(diff, '', diff) AssertionError: '*** expected_results/test_ab_initio_predi[405399 chars]";\n' != '' : *** expected_results/test_ab_initio_prediction/augustus.gff --- results/test_ab_initio_prediction/augustus.gff *************** *** 5,8 **** ! chrI AUGUSTUS gene 1 10595 0.13 - . g1 ! chrI AUGUSTUS transcript 1 10595 0.13 - . g1.t1 ! chrI AUGUSTUS internal 127 217 0.53 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 1067 1195 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 5,8 ---- ! chrI AUGUSTUS gene 1 10595 0.16 - . g1 ! chrI AUGUSTUS transcript 1 10595 0.16 - . g1.t1 ! chrI AUGUSTUS internal 127 217 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 1067 1195 1 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 10,26 **** ! chrI AUGUSTUS internal 7324 7568 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 8590 8772 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 9832 9961 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 10006 10100 0.87 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 10167 10259 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS initial 10422 10481 0.85 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 1 126 0.48 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 218 1066 0.62 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 1196 6131 0.99 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 6307 7323 0.99 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 7569 8589 0.91 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 8773 9831 0.99 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 9962 10005 0.87 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 10101 10166 0.57 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 10260 10421 0.57 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 127 217 0.53 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 1067 1195 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 10,26 ---- ! chrI AUGUSTUS internal 7324 7568 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 8590 8772 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 9832 9961 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 10006 10100 0.89 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS internal 10167 10259 0.63 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS initial 10422 10481 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 1 126 0.55 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 218 1066 0.65 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 1196 6131 1 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 6307 7323 0.98 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 7569 8589 0.84 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 8773 9831 0.97 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 9962 10005 0.89 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 10101 10166 0.63 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS intron 10260 10421 0.59 - . transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 127 217 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 1067 1195 1 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 28,33 **** ! chrI AUGUSTUS CDS 7324 7568 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 8590 8772 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 9832 9961 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 10006 10100 0.87 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 10167 10259 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 10422 10481 0.85 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 28,33 ---- ! chrI AUGUSTUS CDS 7324 7568 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 8590 8772 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 9832 9961 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 10006 10100 0.89 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 10167 10259 0.63 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chrI AUGUSTUS CDS 10422 10481 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 35 **** ! chrI AUGUSTUS 5'-UTR 10482 10595 0.62 - . transcript_id "g1.t1"; gene_id "g1"; --- 35 ---- ! chrI AUGUSTUS 5'-UTR 10482 10595 0.72 - . transcript_id "g1.t1"; gene_id "g1"; *************** *** 54,55 **** ! chrI AUGUSTUS gene 26176 33836 0.03 + . g2 ! chrI AUGUSTUS transcript 26176 33836 0.03 + . g2.t1 --- 54,55 ---- ! chrI AUGUSTUS gene 26176 33836 0.02 + . g2 ! chrI AUGUSTUS transcript 26176 33836 0.02 + . g2.t1 *************** *** 57 **** ! chrI AUGUSTUS 5'-UTR 26176 26414 0.27 + . transcript_id "g2.t1"; gene_id "g2"; --- 57 ---- ! chrI AUGUSTUS 5'-UTR 26176 26414 0.43 + . transcript_id "g2.t1"; gene_id "g2"; *************** *** 59 **** ! chrI AUGUSTUS initial 26415 26516 0.62 + 0 transcript_id "g2.t1"; gene_id "g2"; --- 59 ---- ! chrI AUGUSTUS initial 26415 26516 0.75 + 0 transcript_id "g2.t1"; gene_id "g2"; *************** *** 61,66 **** ! chrI AUGUSTUS internal 28208 28339 0.99 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 28391 28596 0.9 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 29676 30014 0.52 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 31652 32129 0.98 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 33277 33379 0.41 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS terminal 33641 33660 0.4 + 2 transcript_id "g2.t1"; gene_id "g2"; --- 61,66 ---- ! chrI AUGUSTUS internal 28208 28339 1 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 28391 28596 0.89 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 29676 30014 0.49 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 31652 32129 1 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS internal 33277 33379 0.36 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS terminal 33641 33660 0.36 + 2 transcript_id "g2.t1"; gene_id "g2"; *************** *** 69,70 **** ! chrI AUGUSTUS intron 28340 28390 0.98 + . transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS intron 28597 29675 0.92 + . transcript_id "g2.t1"; gene_id "g2"; --- 69,70 ---- ! chrI AUGUSTUS intron 28340 28390 1 + . transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS intron 28597 29675 0.89 + . transcript_id "g2.t1"; gene_id "g2"; *************** *** 72,74 **** ! chrI AUGUSTUS intron 32130 33276 0.56 + . transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS intron 33380 33640 0.4 + . transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 26415 26516 0.62 + 0 transcript_id "g2.t1"; gene_id "g2"; --- 72,74 ---- ! chrI AUGUSTUS intron 32130 33276 0.64 + . transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS intron 33380 33640 0.36 + . transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 26415 26516 0.75 + 0 transcript_id "g2.t1"; gene_id "g2"; *************** *** 76,81 **** ! chrI AUGUSTUS CDS 28208 28339 0.99 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 28391 28596 0.9 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 29676 30014 0.52 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 31652 32129 0.98 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 33277 33379 0.41 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 33641 33660 0.4 + 2 transcript_id "g2.t1"; gene_id "g2"; --- 76,81 ---- ! chrI AUGUSTUS CDS 28208 28339 1 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 28391 28596 0.89 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 29676 30014 0.49 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 31652 32129 1 + 1 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 33277 33379 0.36 + 0 transcript_id "g2.t1"; gene_id "g2"; ! chrI AUGUSTUS CDS 33641 33660 0.36 + 2 transcript_id "g2.t1"; gene_id "g2"; *************** *** 83 **** ! chrI AUGUSTUS 3'-UTR 33661 33836 0.17 + . transcript_id "g2.t1"; gene_id "g2"; --- 83 ---- ! chrI AUGUSTUS 3'-UTR 33661 33836 0.13 + . transcript_id "g2.t1"; gene_id "g2"; *************** *** 107 **** ! chrI AUGUSTUS 3'-UTR 34327 34532 0.63 - . transcript_id "g3.t1"; gene_id "g3"; --- 107 ---- ! chrI AUGUSTUS 3'-UTR 34327 34532 0.65 - . transcript_id "g3.t1"; gene_id "g3"; *************** *** 109,110 **** ! chrI AUGUSTUS terminal 34533 34712 0.69 - 0 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS internal 35686 36011 1 - 2 transcript_id "g3.t1"; gene_id "g3"; --- 109,110 ---- ! chrI AUGUSTUS terminal 34533 34712 0.76 - 0 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS internal 35686 36011 0.99 - 2 transcript_id "g3.t1"; gene_id "g3"; *************** *** 112,116 **** ! chrI AUGUSTUS internal 41367 42555 0.49 - 2 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS internal 42604 42740 0.49 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS internal 43581 43703 0.77 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS initial 43757 43782 0.99 - 0 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS intron 34713 35685 0.69 - . transcript_id "g3.t1"; gene_id "g3"; --- 112,116 ---- ! chrI AUGUSTUS internal 41367 42555 0.54 - 2 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS internal 42604 42740 0.54 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS internal 43581 43703 0.74 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS initial 43757 43782 1 - 0 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS intron 34713 35685 0.75 - . transcript_id "g3.t1"; gene_id "g3"; *************** *** 119,123 **** ! chrI AUGUSTUS intron 42556 42603 0.49 - . transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS intron 42741 43580 0.77 - . transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS intron 43704 43756 0.78 - . transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 34533 34712 0.69 - 0 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 35686 36011 1 - 2 transcript_id "g3.t1"; gene_id "g3"; --- 119,123 ---- ! chrI AUGUSTUS intron 42556 42603 0.54 - . transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS intron 42741 43580 0.74 - . transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS intron 43704 43756 0.77 - . transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 34533 34712 0.76 - 0 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 35686 36011 0.99 - 2 transcript_id "g3.t1"; gene_id "g3"; *************** *** 125,128 **** ! chrI AUGUSTUS CDS 41367 42555 0.49 - 2 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 42604 42740 0.49 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 43581 43703 0.77 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 43757 43782 0.99 - 0 transcript_id "g3.t1"; gene_id "g3"; --- 125,128 ---- ! chrI AUGUSTUS CDS 41367 42555 0.54 - 2 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 42604 42740 0.54 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 43581 43703 0.74 - 1 transcript_id "g3.t1"; gene_id "g3"; ! chrI AUGUSTUS CDS 43757 43782 1 - 0 transcript_id "g3.t1"; gene_id "g3"; *************** *** 130 **** ! chrI AUGUSTUS 5'-UTR 43783 43825 0.31 - . transcript_id "g3.t1"; gene_id "g3"; --- 130 ---- ! chrI AUGUSTUS 5'-UTR 43783 43825 0.41 - . transcript_id "g3.t1"; gene_id "g3"; *************** *** 152,153 **** ! chrI AUGUSTUS gene 46117 50255 0.14 - . g4 ! chrI AUGUSTUS transcript 46117 50255 0.14 - . g4.t1 --- 152,153 ---- ! chrI AUGUSTUS gene 46117 50255 0.18 - . g4 ! chrI AUGUSTUS transcript 46117 50255 0.18 - . g4.t1 *************** *** 155,156 **** ! chrI AUGUSTUS 3'-UTR 46117 46144 0.46 - . transcript_id "g4.t1"; gene_id "g4"; ! chrI AUGUSTUS 3'-UTR 46522 46852 0.53 - . transcript_id "g4.t1"; gene_id "g4"; --- 155,156 ---- ! chrI AUGUSTUS 3'-UTR 46117 46144 0.42 - . transcript_id "g4.t1"; gene_id "g4"; ! chrI AUGUSTUS 3'-UTR 46522 46852 0.58 - . transcript_id "g4.t1"; gene_id "g4"; *************** *** 159,160 **** ! chrI AUGUSTUS single 49142 50179 1 - 0 transcript_id "g4.t1"; gene_id "g4"; ! chrI AUGUSTUS CDS 49142 50179 1 - 0 transcript_id "g4.t1"; gene_id "g4"; --- 159,160 ---- ! chrI AUGUSTUS single 49142 50179 0.98 - 0 transcript_id "g4.t1"; gene_id "g4"; ! chrI AUGUSTUS CDS 49142 50179 0.98 - 0 transcript_id "g4.t1"; gene_id "g4"; *************** *** 162 **** ! chrI AUGUSTUS 5'-UTR 50180 50255 0.51 - . transcript_id "g4.t1"; gene_id "g4"; --- 162 ---- ! chrI AUGUSTUS 5'-UTR 50180 50255 0.44 - . transcript_id "g4.t1"; gene_id "g4"; *************** *** 180,181 **** ! chrI AUGUSTUS gene 50909 59305 0.03 - . g5 ! chrI AUGUSTUS transcript 50909 59305 0.03 - . g5.t1 --- 180,181 ---- ! chrI AUGUSTUS gene 50909 59305 0.02 - . g5 ! chrI AUGUSTUS transcript 50909 59305 0.02 - . g5.t1 *************** *** 183 **** ! chrI AUGUSTUS 3'-UTR 50909 50998 0.55 - . transcript_id "g5.t1"; gene_id "g5"; --- 183 ---- ! chrI AUGUSTUS 3'-UTR 50909 50998 0.52 - . transcript_id "g5.t1"; gene_id "g5"; *************** *** 185,186 **** ! chrI AUGUSTUS terminal 50999 51019 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 51067 52824 0.67 - 0 transcript_id "g5.t1"; gene_id "g5"; --- 185,186 ---- ! chrI AUGUSTUS terminal 50999 51019 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 51067 52824 0.68 - 0 transcript_id "g5.t1"; gene_id "g5"; *************** *** 188,192 **** ! chrI AUGUSTUS internal 53413 53703 0.98 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 55231 56156 0.82 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 56598 56774 0.28 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 57330 58417 0.73 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS initial 58461 59230 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; --- 188,192 ---- ! chrI AUGUSTUS internal 53413 53703 1 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 55231 56156 0.69 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 56598 56774 0.27 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS internal 57330 58417 0.71 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS initial 58461 59230 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; *************** *** 194 **** ! chrI AUGUSTUS intron 52825 53116 0.64 - . transcript_id "g5.t1"; gene_id "g5"; --- 194 ---- ! chrI AUGUSTUS intron 52825 53116 0.67 - . transcript_id "g5.t1"; gene_id "g5"; *************** *** 196,197 **** ! chrI AUGUSTUS intron 53704 55230 0.91 - . transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS intron 56157 56597 0.87 - . transcript_id "g5.t1"; gene_id "g5"; --- 196,197 ---- ! chrI AUGUSTUS intron 53704 55230 0.84 - . transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS intron 56157 56597 0.72 - . transcript_id "g5.t1"; gene_id "g5"; *************** *** 199,201 **** ! chrI AUGUSTUS intron 58418 58460 0.97 - . transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 50999 51019 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 51067 52824 0.67 - 0 transcript_id "g5.t1"; gene_id "g5"; --- 199,201 ---- ! chrI AUGUSTUS intron 58418 58460 0.98 - . transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 50999 51019 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 51067 52824 0.68 - 0 transcript_id "g5.t1"; gene_id "g5"; *************** *** 203,207 **** ! chrI AUGUSTUS CDS 53413 53703 0.98 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 55231 56156 0.82 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 56598 56774 0.28 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 57330 58417 0.73 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 58461 59230 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; --- 203,207 ---- ! chrI AUGUSTUS CDS 53413 53703 1 - 0 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 55231 56156 0.69 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 56598 56774 0.27 - 2 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 57330 58417 0.71 - 1 transcript_id "g5.t1"; gene_id "g5"; ! chrI AUGUSTUS CDS 58461 59230 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; *************** *** 209 **** ! chrI AUGUSTUS 5'-UTR 59231 59305 0.25 - . transcript_id "g5.t1"; gene_id "g5"; --- 209 ---- ! chrI AUGUSTUS 5'-UTR 59231 59305 0.37 - . transcript_id "g5.t1"; gene_id "g5"; *************** *** 243,244 **** ! chrI AUGUSTUS gene 59438 60095 0.14 - . g6 ! chrI AUGUSTUS transcript 59438 60095 0.14 - . g6.t1 --- 243,244 ---- ! chrI AUGUSTUS gene 59438 60095 0.17 - . g6 ! chrI AUGUSTUS transcript 59438 60095 0.17 - . g6.t1 *************** *** 246 **** ! chrI AUGUSTUS 3'-UTR 59438 59458 0.84 - . transcript_id "g6.t1"; gene_id "g6"; --- 246 ---- ! chrI AUGUSTUS 3'-UTR 59438 59458 0.77 - . transcript_id "g6.t1"; gene_id "g6"; *************** *** 248,249 **** ! chrI AUGUSTUS single 59459 60046 0.7 - 0 transcript_id "g6.t1"; gene_id "g6"; ! chrI AUGUSTUS CDS 59459 60046 0.7 - 0 transcript_id "g6.t1"; gene_id "g6"; --- 248,249 ---- ! chrI AUGUSTUS single 59459 60046 0.71 - 0 transcript_id "g6.t1"; gene_id "g6"; ! chrI AUGUSTUS CDS 59459 60046 0.71 - 0 transcript_id "g6.t1"; gene_id "g6"; *************** *** 251 **** ! chrI AUGUSTUS 5'-UTR 60047 60095 0.24 - . transcript_id "g6.t1"; gene_id "g6"; --- 251 ---- ! chrI AUGUSTUS 5'-UTR 60047 60095 0.22 - . transcript_id "g6.t1"; gene_id "g6"; *************** *** 267,268 **** ! chrI AUGUSTUS gene 60196 60805 0.07 + . g7 ! chrI AUGUSTUS transcript 60196 60805 0.07 + . g7.t1 --- 267,268 ---- ! chrI AUGUSTUS gene 60196 60805 0.05 + . g7 ! chrI AUGUSTUS transcript 60196 60805 0.05 + . g7.t1 *************** *** 270 **** ! chrI AUGUSTUS 5'-UTR 60196 60221 0.34 + . transcript_id "g7.t1"; gene_id "g7"; --- 270 ---- ! chrI AUGUSTUS 5'-UTR 60196 60221 0.41 + . transcript_id "g7.t1"; gene_id "g7"; *************** *** 275 **** ! chrI AUGUSTUS 3'-UTR 60687 60805 0.19 + . transcript_id "g7.t1"; gene_id "g7"; --- 275 ---- ! chrI AUGUSTUS 3'-UTR 60687 60805 0.15 + . transcript_id "g7.t1"; gene_id "g7"; *************** *** 290,291 **** ! chrI AUGUSTUS gene 61530 63965 0.07 - . g8 ! chrI AUGUSTUS transcript 61530 63965 0.07 - . g8.t1 --- 290,291 ---- ! chrI AUGUSTUS gene 61530 63965 0.05 - . g8 ! chrI AUGUSTUS transcript 61530 63965 0.05 - . g8.t1 *************** *** 293 **** ! chrI AUGUSTUS 3'-UTR 61530 61737 0.42 - . transcript_id "g8.t1"; gene_id "g8"; --- 293 ---- ! chrI AUGUSTUS 3'-UTR 61530 61737 0.35 - . transcript_id "g8.t1"; gene_id "g8"; *************** *** 297 **** ! chrI AUGUSTUS internal 62796 63272 1 - 1 transcript_id "g8.t1"; gene_id "g8"; --- 297 ---- ! chrI AUGUSTUS internal 62796 63272 0.98 - 1 transcript_id "g8.t1"; gene_id "g8"; *************** *** 301 **** ! chrI AUGUSTUS initial 63825 63905 0.5 - 0 transcript_id "g8.t1"; gene_id "g8"; --- 301 ---- ! chrI AUGUSTUS initial 63825 63905 0.37 - 0 transcript_id "g8.t1"; gene_id "g8"; *************** *** 303 **** ! chrI AUGUSTUS intron 62066 62795 1 - . transcript_id "g8.t1"; gene_id "g8"; --- 303 ---- ! chrI AUGUSTUS intron 62066 62795 0.98 - . transcript_id "g8.t1"; gene_id "g8"; *************** *** 310 **** ! chrI AUGUSTUS CDS 62796 63272 1 - 1 transcript_id "g8.t1"; gene_id "g8"; --- 310 ---- ! chrI AUGUSTUS CDS 62796 63272 0.98 - 1 transcript_id "g8.t1"; gene_id "g8"; *************** *** 314 **** ! chrI AUGUSTUS CDS 63825 63905 0.5 - 0 transcript_id "g8.t1"; gene_id "g8"; --- 314 ---- ! chrI AUGUSTUS CDS 63825 63905 0.37 - 0 transcript_id "g8.t1"; gene_id "g8"; *************** *** 335,336 **** ! chrI AUGUSTUS gene 64206 64920 0.13 + . g9 ! chrI AUGUSTUS transcript 64206 64920 0.13 + . g9.t1 --- 335,336 ---- ! chrI AUGUSTUS gene 64206 64920 0.11 + . g9 ! chrI AUGUSTUS transcript 64206 64920 0.11 + . g9.t1 *************** *** 338 **** ! chrI AUGUSTUS 5'-UTR 64206 64306 0.38 + . transcript_id "g9.t1"; gene_id "g9"; --- 338 ---- ! chrI AUGUSTUS 5'-UTR 64206 64306 0.4 + . transcript_id "g9.t1"; gene_id "g9"; *************** *** 340 **** ! chrI AUGUSTUS initial 64307 64400 1 + 0 transcript_id "g9.t1"; gene_id "g9"; --- 340 ---- ! chrI AUGUSTUS initial 64307 64400 0.93 + 0 transcript_id "g9.t1"; gene_id "g9"; *************** *** 342,343 **** ! chrI AUGUSTUS intron 64401 64451 1 + . transcript_id "g9.t1"; gene_id "g9"; ! chrI AUGUSTUS CDS 64307 64400 1 + 0 transcript_id "g9.t1"; gene_id "g9"; --- 342,343 ---- ! chrI AUGUSTUS intron 64401 64451 0.93 + . transcript_id "g9.t1"; gene_id "g9"; ! chrI AUGUSTUS CDS 64307 64400 0.93 + 0 transcript_id "g9.t1"; gene_id "g9"; *************** *** 346 **** ! chrI AUGUSTUS 3'-UTR 64562 64920 0.3 + . transcript_id "g9.t1"; gene_id "g9"; --- 346 ---- ! chrI AUGUSTUS 3'-UTR 64562 64920 0.29 + . transcript_id "g9.t1"; gene_id "g9"; *************** *** 360,361 **** ! chrI AUGUSTUS gene 64976 65454 0.17 + . g10 ! chrI AUGUSTUS transcript 64976 65454 0.17 + . g10.t1 --- 360,361 ---- ! chrI AUGUSTUS gene 64976 65454 0.1 + . g10 ! chrI AUGUSTUS transcript 64976 65454 0.1 + . g10.t1 *************** *** 363 **** ! chrI AUGUSTUS 5'-UTR 64976 65069 0.45 + . transcript_id "g10.t1"; gene_id "g10"; --- 363 ---- ! chrI AUGUSTUS 5'-UTR 64976 65069 0.42 + . transcript_id "g10.t1"; gene_id "g10"; *************** *** 366 **** ! chrI AUGUSTUS terminal 65235 65381 0.85 + 0 transcript_id "g10.t1"; gene_id "g10"; --- 366 ---- ! chrI AUGUSTUS terminal 65235 65381 0.84 + 0 transcript_id "g10.t1"; gene_id "g10"; *************** *** 369 **** ! chrI AUGUSTUS CDS 65235 65381 0.85 + 0 transcript_id "g10.t1"; gene_id "g10"; --- 369 ---- ! chrI AUGUSTUS CDS 65235 65381 0.84 + 0 transcript_id "g10.t1"; gene_id "g10"; *************** *** 371 **** ! chrI AUGUSTUS 3'-UTR 65382 65454 0.37 + . transcript_id "g10.t1"; gene_id "g10"; --- 371 ---- ! chrI AUGUSTUS 3'-UTR 65382 65454 0.29 + . transcript_id "g10.t1"; gene_id "g10"; *************** *** 386,387 **** ! chrI AUGUSTUS gene 65726 69080 0.12 + . g11 ! chrI AUGUSTUS transcript 65726 69080 0.12 + . g11.t1 --- 386,387 ---- ! chrI AUGUSTUS gene 65726 69080 0.06 + . g11 ! chrI AUGUSTUS transcript 65726 69080 0.06 + . g11.t1 *************** *** 389 **** ! chrI AUGUSTUS 5'-UTR 65726 65750 0.48 + . transcript_id "g11.t1"; gene_id "g11"; --- 389 ---- ! chrI AUGUSTUS 5'-UTR 65726 65750 0.4 + . transcript_id "g11.t1"; gene_id "g11"; *************** *** 391,393 **** ! chrI AUGUSTUS initial 65751 65818 0.62 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS internal 66706 66776 0.92 + 1 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS internal 66837 66973 0.91 + 2 transcript_id "g11.t1"; gene_id "g11"; --- 391,393 ---- ! chrI AUGUSTUS initial 65751 65818 0.55 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS internal 66706 66776 0.97 + 1 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS internal 66837 66973 0.96 + 2 transcript_id "g11.t1"; gene_id "g11"; *************** *** 395,396 **** ! chrI AUGUSTUS internal 68040 68147 0.89 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS internal 68247 68312 0.51 + 0 transcript_id "g11.t1"; gene_id "g11"; --- 395,396 ---- ! chrI AUGUSTUS internal 68040 68147 0.83 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS internal 68247 68312 0.5 + 0 transcript_id "g11.t1"; gene_id "g11"; *************** *** 398,401 **** ! chrI AUGUSTUS internal 68507 68829 0.96 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS terminal 68880 69051 0.81 + 1 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS intron 65819 66705 0.62 + . transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS intron 66777 66836 0.92 + . transcript_id "g11.t1"; gene_id "g11"; --- 398,401 ---- ! chrI AUGUSTUS internal 68507 68829 0.93 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS terminal 68880 69051 0.84 + 1 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS intron 65819 66705 0.55 + . transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS intron 66777 66836 0.97 + . transcript_id "g11.t1"; gene_id "g11"; *************** *** 403,404 **** ! chrI AUGUSTUS intron 67241 68039 0.89 + . transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS intron 68148 68246 0.45 + . transcript_id "g11.t1"; gene_id "g11"; --- 403,404 ---- ! chrI AUGUSTUS intron 67241 68039 0.83 + . transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS intron 68148 68246 0.4 + . transcript_id "g11.t1"; gene_id "g11"; *************** *** 407,410 **** ! chrI AUGUSTUS intron 68830 68879 0.81 + . transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 65751 65818 0.62 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 66706 66776 0.92 + 1 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 66837 66973 0.91 + 2 transcript_id "g11.t1"; gene_id "g11"; --- 407,410 ---- ! chrI AUGUSTUS intron 68830 68879 0.84 + . transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 65751 65818 0.55 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 66706 66776 0.97 + 1 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 66837 66973 0.96 + 2 transcript_id "g11.t1"; gene_id "g11"; *************** *** 412,413 **** ! chrI AUGUSTUS CDS 68040 68147 0.89 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 68247 68312 0.51 + 0 transcript_id "g11.t1"; gene_id "g11"; --- 412,413 ---- ! chrI AUGUSTUS CDS 68040 68147 0.83 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 68247 68312 0.5 + 0 transcript_id "g11.t1"; gene_id "g11"; *************** *** 415,416 **** ! chrI AUGUSTUS CDS 68507 68829 0.96 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 68880 69051 0.81 + 1 transcript_id "g11.t1"; gene_id "g11"; --- 415,416 ---- ! chrI AUGUSTUS CDS 68507 68829 0.93 + 0 transcript_id "g11.t1"; gene_id "g11"; ! chrI AUGUSTUS CDS 68880 69051 0.84 + 1 transcript_id "g11.t1"; gene_id "g11"; *************** *** 418 **** ! chrI AUGUSTUS 3'-UTR 69052 69080 0.64 + . transcript_id "g11.t1"; gene_id "g11"; --- 418 ---- ! chrI AUGUSTUS 3'-UTR 69052 69080 0.6 + . transcript_id "g11.t1"; gene_id "g11"; *************** *** 436,437 **** ! chrI AUGUSTUS gene 69091 69615 0.14 - . g12 ! chrI AUGUSTUS transcript 69091 69615 0.14 - . g12.t1 --- 436,437 ---- ! chrI AUGUSTUS gene 69091 69615 0.21 - . g12 ! chrI AUGUSTUS transcript 69091 69615 0.21 - . g12.t1 *************** *** 439 **** ! chrI AUGUSTUS 3'-UTR 69091 69130 0.69 - . transcript_id "g12.t1"; gene_id "g12"; --- 439 ---- ! chrI AUGUSTUS 3'-UTR 69091 69130 0.63 - . transcript_id "g12.t1"; gene_id "g12"; *************** *** 442,443 **** ! chrI AUGUSTUS initial 69345 69515 1 - 0 transcript_id "g12.t1"; gene_id "g12"; ! chrI AUGUSTUS intron 69296 69344 1 - . transcript_id "g12.t1"; gene_id "g12"; --- 442,443 ---- ! chrI AUGUSTUS initial 69345 69515 0.99 - 0 transcript_id "g12.t1"; gene_id "g12"; ! chrI AUGUSTUS intron 69296 69344 0.99 - . transcript_id "g12.t1"; gene_id "g12"; *************** *** 445 **** ! chrI AUGUSTUS CDS 69345 69515 1 - 0 transcript_id "g12.t1"; gene_id "g12"; --- 445 ---- ! chrI AUGUSTUS CDS 69345 69515 0.99 - 0 transcript_id "g12.t1"; gene_id "g12"; *************** *** 447 **** ! chrI AUGUSTUS 5'-UTR 69516 69615 0.19 - . transcript_id "g12.t1"; gene_id "g12"; --- 447 ---- ! chrI AUGUSTUS 5'-UTR 69516 69615 0.29 - . transcript_id "g12.t1"; gene_id "g12"; *************** *** 462,463 **** ! chrI AUGUSTUS gene 69685 70725 0.2 - . g13 ! chrI AUGUSTUS transcript 69685 70725 0.2 - . g13.t1 --- 462,463 ---- ! chrI AUGUSTUS gene 69685 70725 0.32 - . g13 ! chrI AUGUSTUS transcript 69685 70725 0.32 - . g13.t1 *************** *** 465 **** ! chrI AUGUSTUS 3'-UTR 69685 69722 0.74 - . transcript_id "g13.t1"; gene_id "g13"; --- 465 ---- ! chrI AUGUSTUS 3'-UTR 69685 69722 0.85 - . transcript_id "g13.t1"; gene_id "g13"; *************** *** 468,471 **** ! chrI AUGUSTUS internal 70054 70209 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS initial 70442 70606 0.97 - 0 transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS intron 69840 70053 0.93 - . transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS intron 70210 70441 0.97 - . transcript_id "g13.t1"; gene_id "g13"; --- 468,471 ---- ! chrI AUGUSTUS internal 70054 70209 0.89 - 0 transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS initial 70442 70606 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS intron 69840 70053 0.89 - . transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS intron 70210 70441 0.93 - . transcript_id "g13.t1"; gene_id "g13"; *************** *** 473,474 **** ! chrI AUGUSTUS CDS 70054 70209 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS CDS 70442 70606 0.97 - 0 transcript_id "g13.t1"; gene_id "g13"; --- 473,474 ---- ! chrI AUGUSTUS CDS 70054 70209 0.89 - 0 transcript_id "g13.t1"; gene_id "g13"; ! chrI AUGUSTUS CDS 70442 70606 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; *************** *** 476 **** ! chrI AUGUSTUS 5'-UTR 70607 70725 0.26 - . transcript_id "g13.t1"; gene_id "g13"; --- 476 ---- ! chrI AUGUSTUS 5'-UTR 70607 70725 0.35 - . transcript_id "g13.t1"; gene_id "g13"; *************** *** 491,492 **** ! chrI AUGUSTUS gene 71286 72550 0.33 + . g14 ! chrI AUGUSTUS transcript 71286 72550 0.33 + . g14.t1 --- 491,492 ---- ! chrI AUGUSTUS gene 71286 72550 0.35 + . g14 ! chrI AUGUSTUS transcript 71286 72550 0.35 + . g14.t1 *************** *** 494 **** ! chrI AUGUSTUS 5'-UTR 71286 71354 0.45 + . transcript_id "g14.t1"; gene_id "g14"; --- 494 ---- ! chrI AUGUSTUS 5'-UTR 71286 71354 0.49 + . transcript_id "g14.t1"; gene_id "g14"; *************** *** 505 **** ! chrI AUGUSTUS 3'-UTR 72301 72550 0.74 + . transcript_id "g14.t1"; gene_id "g14"; --- 505 ---- ! chrI AUGUSTUS 3'-UTR 72301 72550 0.71 + . transcript_id "g14.t1"; gene_id "g14"; *************** *** 526 **** ! chrI AUGUSTUS 5'-UTR 72656 72681 0.57 + . transcript_id "g15.t1"; gene_id "g15"; --- 526 ---- ! chrI AUGUSTUS 5'-UTR 72656 72681 0.59 + . transcript_id "g15.t1"; gene_id "g15"; *************** *** 528 **** ! chrI AUGUSTUS initial 72682 72808 0.84 + 0 transcript_id "g15.t1"; gene_id "g15"; --- 528 ---- ! chrI AUGUSTUS initial 72682 72808 0.85 + 0 transcript_id "g15.t1"; gene_id "g15"; *************** *** 532 **** ! chrI AUGUSTUS intron 72809 73420 1 + . transcript_id "g15.t1"; gene_id "g15"; --- 532 ---- ! chrI AUGUSTUS intron 72809 73420 0.99 + . transcript_id "g15.t1"; gene_id "g15"; *************** *** 535 **** ! chrI AUGUSTUS CDS 72682 72808 0.84 + 0 transcript_id "g15.t1"; gene_id "g15"; --- 535 ---- ! chrI AUGUSTUS CDS 72682 72808 0.85 + 0 transcript_id "g15.t1"; gene_id "g15"; *************** *** 540 **** ! chrI AUGUSTUS 3'-UTR 76103 76290 0.3 + . transcript_id "g15.t1"; gene_id "g15"; --- 540 ---- ! chrI AUGUSTUS 3'-UTR 76103 76290 0.24 + . transcript_id "g15.t1"; gene_id "g15"; *************** *** 559,560 **** ! chrI AUGUSTUS gene 76886 85550 0.05 + . g16 ! chrI AUGUSTUS transcript 76886 85550 0.05 + . g16.t1 --- 559,560 ---- ! chrI AUGUSTUS gene 76886 85550 0.03 + . g16 ! chrI AUGUSTUS transcript 76886 85550 0.03 + . g16.t1 *************** *** 562,563 **** ! chrI AUGUSTUS 5'-UTR 76886 76916 0.12 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS 5'-UTR 78963 78988 0.68 + . transcript_id "g16.t1"; gene_id "g16"; --- 562,563 ---- ! chrI AUGUSTUS 5'-UTR 76886 76916 0.08 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS 5'-UTR 78963 78988 0.61 + . transcript_id "g16.t1"; gene_id "g16"; *************** *** 565,567 **** ! chrI AUGUSTUS initial 78989 79056 0.36 + 0 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS internal 79266 79359 0.76 + 1 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS internal 80746 80902 0.74 + 0 transcript_id "g16.t1"; gene_id "g16"; --- 565,567 ---- ! chrI AUGUSTUS initial 78989 79056 0.33 + 0 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS internal 79266 79359 0.7 + 1 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS internal 80746 80902 0.69 + 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 569 **** ! chrI AUGUSTUS internal 82816 83031 0.97 + 0 transcript_id "g16.t1"; gene_id "g16"; --- 569 ---- ! chrI AUGUSTUS internal 82816 83031 0.98 + 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 571 **** ! chrI AUGUSTUS internal 84481 84552 0.93 + 0 transcript_id "g16.t1"; gene_id "g16"; --- 571 ---- ! chrI AUGUSTUS internal 84481 84552 0.91 + 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 573,574 **** ! chrI AUGUSTUS intron 79057 79265 0.36 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 79360 80745 0.76 + . transcript_id "g16.t1"; gene_id "g16"; --- 573,574 ---- ! chrI AUGUSTUS intron 79057 79265 0.33 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 79360 80745 0.7 + . transcript_id "g16.t1"; gene_id "g16"; *************** *** 576,582 **** ! chrI AUGUSTUS intron 81312 82815 0.77 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 83032 84340 0.97 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 84419 84480 0.99 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 84553 85252 0.93 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS CDS 78989 79056 0.36 + 0 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS CDS 79266 79359 0.76 + 1 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS CDS 80746 80902 0.74 + 0 transcript_id "g16.t1"; gene_id "g16"; --- 576,582 ---- ! chrI AUGUSTUS intron 81312 82815 0.74 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 83032 84340 0.98 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 84419 84480 1 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS intron 84553 85252 0.91 + . transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS CDS 78989 79056 0.33 + 0 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS CDS 79266 79359 0.7 + 1 transcript_id "g16.t1"; gene_id "g16"; ! chrI AUGUSTUS CDS 80746 80902 0.69 + 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 584 **** ! chrI AUGUSTUS CDS 82816 83031 0.97 + 0 transcript_id "g16.t1"; gene_id "g16"; --- 584 ---- ! chrI AUGUSTUS CDS 82816 83031 0.98 + 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 586 **** ! chrI AUGUSTUS CDS 84481 84552 0.93 + 0 transcript_id "g16.t1"; gene_id "g16"; --- 586 ---- ! chrI AUGUSTUS CDS 84481 84552 0.91 + 0 transcript_id "g16.t1"; gene_id "g16"; *************** *** 589 **** ! chrI AUGUSTUS 3'-UTR 85493 85550 0.74 + . transcript_id "g16.t1"; gene_id "g16"; --- 589 ---- ! chrI AUGUSTUS 3'-UTR 85493 85550 0.69 + . transcript_id "g16.t1"; gene_id "g16"; *************** *** 612 **** ! chrI AUGUSTUS 3'-UTR 85608 85674 0.53 - . transcript_id "g17.t1"; gene_id "g17"; --- 612 ---- ! chrI AUGUSTUS 3'-UTR 85608 85674 0.55 - . transcript_id "g17.t1"; gene_id "g17"; *************** *** 614,616 **** ! chrI AUGUSTUS terminal 85675 85817 0.58 - 2 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS internal 86938 87409 0.51 - 0 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS internal 87742 87885 1 - 0 transcript_id "g17.t1"; gene_id "g17"; --- 614,616 ---- ! chrI AUGUSTUS terminal 85675 85817 0.62 - 2 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS internal 86938 87409 0.48 - 0 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS internal 87742 87885 0.98 - 0 transcript_id "g17.t1"; gene_id "g17"; *************** *** 621,624 **** ! chrI AUGUSTUS initial 93697 93798 0.81 - 0 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 85818 86937 0.58 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 87410 87741 0.86 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 87886 88145 1 - . transcript_id "g17.t1"; gene_id "g17"; --- 621,624 ---- ! chrI AUGUSTUS initial 93697 93798 0.71 - 0 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 85818 86937 0.62 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 87410 87741 0.74 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 87886 88145 0.98 - . transcript_id "g17.t1"; gene_id "g17"; *************** *** 627,631 **** ! chrI AUGUSTUS intron 90594 92212 1 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 92503 93696 0.81 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS CDS 85675 85817 0.58 - 2 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS CDS 86938 87409 0.51 - 0 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS CDS 87742 87885 1 - 0 transcript_id "g17.t1"; gene_id "g17"; --- 627,631 ---- ! chrI AUGUSTUS intron 90594 92212 0.99 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS intron 92503 93696 0.73 - . transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS CDS 85675 85817 0.62 - 2 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS CDS 86938 87409 0.48 - 0 transcript_id "g17.t1"; gene_id "g17"; ! chrI AUGUSTUS CDS 87742 87885 0.98 - 0 transcript_id "g17.t1"; gene_id "g17"; *************** *** 636 **** ! chrI AUGUSTUS CDS 93697 93798 0.81 - 0 transcript_id "g17.t1"; gene_id "g17"; --- 636 ---- ! chrI AUGUSTUS CDS 93697 93798 0.71 - 0 transcript_id "g17.t1"; gene_id "g17"; *************** *** 638 **** ! chrI AUGUSTUS 5'-UTR 93799 93865 0.36 - . transcript_id "g17.t1"; gene_id "g17"; --- 638 ---- ! chrI AUGUSTUS 5'-UTR 93799 93865 0.38 - . transcript_id "g17.t1"; gene_id "g17"; *************** *** 658,659 **** ! chrI AUGUSTUS gene 97316 105470 0.32 + . g18 ! chrI AUGUSTUS transcript 97316 105470 0.32 + . g18.t1 --- 658,659 ---- ! chrI AUGUSTUS gene 97316 105470 0.3 + . g18 ! chrI AUGUSTUS transcript 97316 105470 0.3 + . g18.t1 *************** *** 661 **** ! chrI AUGUSTUS 5'-UTR 97316 97348 0.47 + . transcript_id "g18.t1"; gene_id "g18"; --- 661 ---- ! chrI AUGUSTUS 5'-UTR 97316 97348 0.43 + . transcript_id "g18.t1"; gene_id "g18"; *************** *** 663 **** ! chrI AUGUSTUS initial 97349 97447 1 + 0 transcript_id "g18.t1"; gene_id "g18"; --- 663 ---- ! chrI AUGUSTUS initial 97349 97447 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; *************** *** 666,668 **** ! chrI AUGUSTUS internal 100626 101006 0.97 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS internal 102145 102568 0.85 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS internal 103200 103291 0.96 + 2 transcript_id "g18.t1"; gene_id "g18"; --- 666,668 ---- ! chrI AUGUSTUS internal 100626 101006 0.95 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS internal 102145 102568 0.89 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS internal 103200 103291 0.97 + 2 transcript_id "g18.t1"; gene_id "g18"; *************** *** 670 **** ! chrI AUGUSTUS terminal 105186 105448 0.91 + 2 transcript_id "g18.t1"; gene_id "g18"; --- 670 ---- ! chrI AUGUSTUS terminal 105186 105448 0.9 + 2 transcript_id "g18.t1"; gene_id "g18"; *************** *** 674,676 **** ! chrI AUGUSTUS intron 101007 102144 0.98 + . transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS intron 102569 103199 0.85 + . transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS intron 103292 103939 0.96 + . transcript_id "g18.t1"; gene_id "g18"; --- 674,676 ---- ! chrI AUGUSTUS intron 101007 102144 0.95 + . transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS intron 102569 103199 0.89 + . transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS intron 103292 103939 0.97 + . transcript_id "g18.t1"; gene_id "g18"; *************** *** 678 **** ! chrI AUGUSTUS CDS 97349 97447 1 + 0 transcript_id "g18.t1"; gene_id "g18"; --- 678 ---- ! chrI AUGUSTUS CDS 97349 97447 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; *************** *** 681,683 **** ! chrI AUGUSTUS CDS 100626 101006 0.97 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS CDS 102145 102568 0.85 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS CDS 103200 103291 0.96 + 2 transcript_id "g18.t1"; gene_id "g18"; --- 681,683 ---- ! chrI AUGUSTUS CDS 100626 101006 0.95 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS CDS 102145 102568 0.89 + 0 transcript_id "g18.t1"; gene_id "g18"; ! chrI AUGUSTUS CDS 103200 103291 0.97 + 2 transcript_id "g18.t1"; gene_id "g18"; *************** *** 685 **** ! chrI AUGUSTUS CDS 105186 105448 0.91 + 2 transcript_id "g18.t1"; gene_id "g18"; --- 685 ---- ! chrI AUGUSTUS CDS 105186 105448 0.9 + 2 transcript_id "g18.t1"; gene_id "g18"; *************** *** 708,709 **** ! chrI AUGUSTUS gene 107407 108865 0.5 - . g19 ! chrI AUGUSTUS transcript 107407 108865 0.5 - . g19.t1 --- 708,709 ---- ! chrI AUGUSTUS gene 107407 108865 0.46 - . g19 ! chrI AUGUSTUS transcript 107407 108865 0.46 - . g19.t1 *************** *** 711 **** ! chrI AUGUSTUS 3'-UTR 107407 107458 1 - . transcript_id "g19.t1"; gene_id "g19"; --- 711 ---- ! chrI AUGUSTUS 3'-UTR 107407 107458 0.99 - . transcript_id "g19.t1"; gene_id "g19"; *************** *** 715 **** ! chrI AUGUSTUS initial 108776 108830 0.9 - 0 transcript_id "g19.t1"; gene_id "g19"; --- 715 ---- ! chrI AUGUSTUS initial 108776 108830 0.91 - 0 transcript_id "g19.t1"; gene_id "g19"; *************** *** 717 **** ! chrI AUGUSTUS intron 108640 108775 0.9 - . transcript_id "g19.t1"; gene_id "g19"; --- 717 ---- ! chrI AUGUSTUS intron 108640 108775 0.91 - . transcript_id "g19.t1"; gene_id "g19"; *************** *** 720 **** ! chrI AUGUSTUS CDS 108776 108830 0.9 - 0 transcript_id "g19.t1"; gene_id "g19"; --- 720 ---- ! chrI AUGUSTUS CDS 108776 108830 0.91 - 0 transcript_id "g19.t1"; gene_id "g19"; *************** *** 722 **** ! chrI AUGUSTUS 5'-UTR 108831 108865 0.52 - . transcript_id "g19.t1"; gene_id "g19"; --- 722 ---- ! chrI AUGUSTUS 5'-UTR 108831 108865 0.46 - . transcript_id "g19.t1"; gene_id "g19"; *************** *** 739,740 **** ! chrI AUGUSTUS gene 109176 113257 0.33 + . g20 ! chrI AUGUSTUS transcript 109176 113257 0.33 + . g20.t1 --- 739,740 ---- ! chrI AUGUSTUS gene 109176 113257 0.48 + . g20 ! chrI AUGUSTUS transcript 109176 113257 0.48 + . g20.t1 *************** *** 742 **** ! chrI AUGUSTUS 5'-UTR 109176 109203 0.6 + . transcript_id "g20.t1"; gene_id "g20"; --- 742 ---- ! chrI AUGUSTUS 5'-UTR 109176 109203 0.69 + . transcript_id "g20.t1"; gene_id "g20"; *************** *** 744,754 **** ! chrI AUGUSTUS initial 109204 109232 0.99 + 0 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS internal 110134 110451 0.99 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS internal 111387 111618 0.72 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS terminal 113229 113231 0.61 + 0 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS intron 109233 110133 0.99 + . transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS intron 110452 111386 0.99 + . transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS intron 111619 113228 0.61 + . transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 109204 109232 0.99 + 0 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 110134 110451 0.99 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 111387 111618 0.72 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 113229 113231 0.61 + 0 transcript_id "g20.t1"; gene_id "g20"; --- 744,754 ---- ! chrI AUGUSTUS initial 109204 109232 0.98 + 0 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS internal 110134 110451 1 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS internal 111387 111618 0.74 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS terminal 113229 113231 0.64 + 0 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS intron 109233 110133 0.98 + . transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS intron 110452 111386 1 + . transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS intron 111619 113228 0.64 + . transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 109204 109232 0.98 + 0 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 110134 110451 1 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 111387 111618 0.74 + 1 transcript_id "g20.t1"; gene_id "g20"; ! chrI AUGUSTUS CDS 113229 113231 0.64 + 0 transcript_id "g20.t1"; gene_id "g20"; *************** *** 756 **** ! chrI AUGUSTUS 3'-UTR 113232 113257 0.59 + . transcript_id "g20.t1"; gene_id "g20"; --- 756 ---- ! chrI AUGUSTUS 3'-UTR 113232 113257 0.64 + . transcript_id "g20.t1"; gene_id "g20"; *************** *** 774,775 **** ! chrI AUGUSTUS gene 113607 118555 0.08 - . g21 ! chrI AUGUSTUS transcript 113607 118555 0.08 - . g21.t1 --- 774,775 ---- ! chrI AUGUSTUS gene 113607 118555 0.16 - . g21 ! chrI AUGUSTUS transcript 113607 118555 0.16 - . g21.t1 *************** *** 777 **** ! chrI AUGUSTUS 3'-UTR 113607 113785 0.46 - . transcript_id "g21.t1"; gene_id "g21"; --- 777 ---- ! chrI AUGUSTUS 3'-UTR 113607 113785 0.43 - . transcript_id "g21.t1"; gene_id "g21"; *************** *** 783,784 **** ! chrI AUGUSTUS internal 116743 116861 0.67 - 1 transcript_id "g21.t1"; gene_id "g21"; ! chrI AUGUSTUS internal 116983 117070 0.91 - 2 transcript_id "g21.t1"; gene_id "g21"; --- 783,784 ---- ! chrI AUGUSTUS internal 116743 116861 0.73 - 1 transcript_id "g21.t1"; gene_id "g21"; ! chrI AUGUSTUS internal 116983 117070 0.92 - 2 transcript_id "g21.t1"; gene_id "g21"; *************** *** 791 **** ! chrI AUGUSTUS intron 116583 116742 0.66 - . transcript_id "g21.t1"; gene_id "g21"; --- 791 ---- ! chrI AUGUSTUS intron 116583 116742 0.71 - . transcript_id "g21.t1"; gene_id "g21"; *************** *** 793 **** ! chrI AUGUSTUS intron 117071 117122 0.91 - . transcript_id "g21.t1"; gene_id "g21"; --- 793 ---- ! chrI AUGUSTUS intron 117071 117122 0.92 - . transcript_id "g21.t1"; gene_id "g21"; *************** *** 800,801 **** ! chrI AUGUSTUS CDS 116743 116861 0.67 - 1 transcript_id "g21.t1"; gene_id "g21"; ! chrI AUGUSTUS CDS 116983 117070 0.91 - 2 transcript_id "g21.t1"; gene_id "g21"; --- 800,801 ---- ! chrI AUGUSTUS CDS 116743 116861 0.73 - 1 transcript_id "g21.t1"; gene_id "g21"; ! chrI AUGUSTUS CDS 116983 117070 0.92 - 2 transcript_id "g21.t1"; gene_id "g21"; *************** *** 806 **** ! chrI AUGUSTUS 5'-UTR 118521 118555 0.46 - . transcript_id "g21.t1"; gene_id "g21"; --- 806 ---- ! chrI AUGUSTUS 5'-UTR 118521 118555 0.53 - . transcript_id "g21.t1"; gene_id "g21"; *************** *** 826,827 **** ! chrI AUGUSTUS gene 128546 145973 0.28 + . g22 ! chrI AUGUSTUS transcript 128546 145973 0.28 + . g22.t1 --- 826,827 ---- ! chrI AUGUSTUS gene 128546 145973 0.26 + . g22 ! chrI AUGUSTUS transcript 128546 145973 0.26 + . g22.t1 *************** *** 829 **** ! chrI AUGUSTUS 5'-UTR 128546 128591 0.47 + . transcript_id "g22.t1"; gene_id "g22"; --- 829 ---- ! chrI AUGUSTUS 5'-UTR 128546 128591 0.37 + . transcript_id "g22.t1"; gene_id "g22"; *************** *** 831 **** ! chrI AUGUSTUS initial 128592 128775 0.53 + 0 transcript_id "g22.t1"; gene_id "g22"; --- 831 ---- ! chrI AUGUSTUS initial 128592 128775 0.45 + 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 833 **** ! chrI AUGUSTUS internal 135050 135145 1 + 0 transcript_id "g22.t1"; gene_id "g22"; --- 833 ---- ! chrI AUGUSTUS internal 135050 135145 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 839 **** ! chrI AUGUSTUS internal 145041 145136 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; --- 839 ---- ! chrI AUGUSTUS internal 145041 145136 1 + 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 841,843 **** ! chrI AUGUSTUS intron 128776 134788 0.5 + . transcript_id "g22.t1"; gene_id "g22"; ! chrI AUGUSTUS intron 134923 135049 1 + . transcript_id "g22.t1"; gene_id "g22"; ! chrI AUGUSTUS intron 135146 136532 1 + . transcript_id "g22.t1"; gene_id "g22"; --- 841,843 ---- ! chrI AUGUSTUS intron 128776 134788 0.44 + . transcript_id "g22.t1"; gene_id "g22"; ! chrI AUGUSTUS intron 134923 135049 0.99 + . transcript_id "g22.t1"; gene_id "g22"; ! chrI AUGUSTUS intron 135146 136532 0.99 + . transcript_id "g22.t1"; gene_id "g22"; *************** *** 847 **** ! chrI AUGUSTUS intron 143093 144879 0.87 + . transcript_id "g22.t1"; gene_id "g22"; --- 847 ---- ! chrI AUGUSTUS intron 143093 144879 0.84 + . transcript_id "g22.t1"; gene_id "g22"; *************** *** 849,850 **** ! chrI AUGUSTUS intron 145137 145688 0.99 + . transcript_id "g22.t1"; gene_id "g22"; ! chrI AUGUSTUS CDS 128592 128775 0.53 + 0 transcript_id "g22.t1"; gene_id "g22"; --- 849,850 ---- ! chrI AUGUSTUS intron 145137 145688 1 + . transcript_id "g22.t1"; gene_id "g22"; ! chrI AUGUSTUS CDS 128592 128775 0.45 + 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 852 **** ! chrI AUGUSTUS CDS 135050 135145 1 + 0 transcript_id "g22.t1"; gene_id "g22"; --- 852 ---- ! chrI AUGUSTUS CDS 135050 135145 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 858 **** ! chrI AUGUSTUS CDS 145041 145136 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; --- 858 ---- ! chrI AUGUSTUS CDS 145041 145136 1 + 0 transcript_id "g22.t1"; gene_id "g22"; *************** *** 861 **** ! chrI AUGUSTUS 3'-UTR 145764 145973 0.69 + . transcript_id "g22.t1"; gene_id "g22"; --- 861 ---- ! chrI AUGUSTUS 3'-UTR 145764 145973 0.76 + . transcript_id "g22.t1"; gene_id "g22"; *************** *** 884,885 **** ! chrI AUGUSTUS gene 149016 149456 0.12 + . g23 ! chrI AUGUSTUS transcript 149016 149456 0.12 + . g23.t1 --- 884,885 ---- ! chrI AUGUSTUS gene 149016 149456 0.11 + . g23 ! chrI AUGUSTUS transcript 149016 149456 0.11 + . g23.t1 *************** *** 887 **** ! chrI AUGUSTUS 5'-UTR 149016 149045 0.31 + . transcript_id "g23.t1"; gene_id "g23"; --- 887 ---- ! chrI AUGUSTUS 5'-UTR 149016 149045 0.24 + . transcript_id "g23.t1"; gene_id "g23"; *************** *** 889,890 **** ! chrI AUGUSTUS initial 149046 149254 0.76 + 0 transcript_id "g23.t1"; gene_id "g23"; ! chrI AUGUSTUS terminal 149306 149396 0.97 + 1 transcript_id "g23.t1"; gene_id "g23"; --- 889,890 ---- ! chrI AUGUSTUS initial 149046 149254 0.65 + 0 transcript_id "g23.t1"; gene_id "g23"; ! chrI AUGUSTUS terminal 149306 149396 0.96 + 1 transcript_id "g23.t1"; gene_id "g23"; *************** *** 892,893 **** ! chrI AUGUSTUS CDS 149046 149254 0.76 + 0 transcript_id "g23.t1"; gene_id "g23"; ! chrI AUGUSTUS CDS 149306 149396 0.97 + 1 transcript_id "g23.t1"; gene_id "g23"; --- 892,893 ---- ! chrI AUGUSTUS CDS 149046 149254 0.65 + 0 transcript_id "g23.t1"; gene_id "g23"; ! chrI AUGUSTUS CDS 149306 149396 0.96 + 1 transcript_id "g23.t1"; gene_id "g23"; *************** *** 895 **** ! chrI AUGUSTUS 3'-UTR 149397 149456 0.36 + . transcript_id "g23.t1"; gene_id "g23"; --- 895 ---- ! chrI AUGUSTUS 3'-UTR 149397 149456 0.44 + . transcript_id "g23.t1"; gene_id "g23"; *************** *** 910,911 **** ! chrI AUGUSTUS gene 149852 151305 0.1 - . g24 ! chrI AUGUSTUS transcript 149852 151305 0.1 - . g24.t1 --- 910,911 ---- ! chrI AUGUSTUS gene 149852 151305 0.12 - . g24 ! chrI AUGUSTUS transcript 149852 151305 0.12 - . g24.t1 *************** *** 913 **** ! chrI AUGUSTUS 3'-UTR 149852 149905 0.44 - . transcript_id "g24.t1"; gene_id "g24"; --- 913 ---- ! chrI AUGUSTUS 3'-UTR 149852 149905 0.35 - . transcript_id "g24.t1"; gene_id "g24"; *************** *** 915,922 **** ! chrI AUGUSTUS terminal 149906 150071 0.8 - 1 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS internal 150694 150977 0.66 - 0 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS initial 151236 151238 0.6 - 0 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS intron 150072 150693 0.8 - . transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS intron 150978 151235 0.6 - . transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS CDS 149906 150071 0.8 - 1 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS CDS 150694 150977 0.66 - 0 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS CDS 151236 151238 0.6 - 0 transcript_id "g24.t1"; gene_id "g24"; --- 915,922 ---- ! chrI AUGUSTUS terminal 149906 150071 0.81 - 1 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS internal 150694 150977 0.69 - 0 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS initial 151236 151238 0.59 - 0 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS intron 150072 150693 0.81 - . transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS intron 150978 151235 0.59 - . transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS CDS 149906 150071 0.81 - 1 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS CDS 150694 150977 0.69 - 0 transcript_id "g24.t1"; gene_id "g24"; ! chrI AUGUSTUS CDS 151236 151238 0.59 - 0 transcript_id "g24.t1"; gene_id "g24"; *************** *** 924 **** ! chrI AUGUSTUS 5'-UTR 151239 151305 0.17 - . transcript_id "g24.t1"; gene_id "g24"; --- 924 ---- ! chrI AUGUSTUS 5'-UTR 151239 151305 0.28 - . transcript_id "g24.t1"; gene_id "g24"; *************** *** 941,942 **** ! chrI AUGUSTUS gene 152796 156161 0.06 + . g25 ! chrI AUGUSTUS transcript 152796 156161 0.06 + . g25.t1 --- 941,942 ---- ! chrI AUGUSTUS gene 152796 156161 0.07 + . g25 ! chrI AUGUSTUS transcript 152796 156161 0.07 + . g25.t1 *************** *** 944 **** ! chrI AUGUSTUS 5'-UTR 152796 152986 0.21 + . transcript_id "g25.t1"; gene_id "g25"; --- 944 ---- ! chrI AUGUSTUS 5'-UTR 152796 152986 0.25 + . transcript_id "g25.t1"; gene_id "g25"; *************** *** 950 **** ! chrI AUGUSTUS 3'-UTR 155685 156161 0.27 + . transcript_id "g25.t1"; gene_id "g25"; --- 950 ---- ! chrI AUGUSTUS 3'-UTR 155685 156161 0.25 + . transcript_id "g25.t1"; gene_id "g25"; *************** *** 966,967 **** ! chrI AUGUSTUS gene 160036 166396 0.23 + . g26 ! chrI AUGUSTUS transcript 160036 166396 0.23 + . g26.t1 --- 966,967 ---- ! chrI AUGUSTUS gene 160036 166396 0.33 + . g26 ! chrI AUGUSTUS transcript 160036 166396 0.33 + . g26.t1 *************** *** 969 **** ! chrI AUGUSTUS 5'-UTR 160036 160066 0.37 + . transcript_id "g26.t1"; gene_id "g26"; --- 969 ---- ! chrI AUGUSTUS 5'-UTR 160036 160066 0.42 + . transcript_id "g26.t1"; gene_id "g26"; *************** *** 971 **** ! chrI AUGUSTUS initial 160067 160201 0.91 + 0 transcript_id "g26.t1"; gene_id "g26"; --- 971 ---- ! chrI AUGUSTUS initial 160067 160201 0.86 + 0 transcript_id "g26.t1"; gene_id "g26"; *************** *** 973,974 **** ! chrI AUGUSTUS internal 164020 164104 0.95 + 0 transcript_id "g26.t1"; gene_id "g26"; ! chrI AUGUSTUS internal 164828 164986 0.9 + 2 transcript_id "g26.t1"; gene_id "g26"; --- 973,974 ---- ! chrI AUGUSTUS internal 164020 164104 0.98 + 0 transcript_id "g26.t1"; gene_id "g26"; ! chrI AUGUSTUS internal 164828 164986 0.95 + 2 transcript_id "g26.t1"; gene_id "g26"; *************** *** 978,979 **** ! chrI AUGUSTUS intron 163292 164019 0.95 + . transcript_id "g26.t1"; gene_id "g26"; ! chrI AUGUSTUS intron 164105 164827 0.89 + . transcript_id "g26.t1"; gene_id "g26"; --- 978,979 ---- ! chrI AUGUSTUS intron 163292 164019 0.98 + . transcript_id "g26.t1"; gene_id "g26"; ! chrI AUGUSTUS intron 164105 164827 0.94 + . transcript_id "g26.t1"; gene_id "g26"; *************** *** 982 **** ! chrI AUGUSTUS CDS 160067 160201 0.91 + 0 transcript_id "g26.t1"; gene_id "g26"; --- 982 ---- ! chrI AUGUSTUS CDS 160067 160201 0.86 + 0 transcript_id "g26.t1"; gene_id "g26"; *************** *** 984,985 **** ! chrI AUGUSTUS CDS 164020 164104 0.95 + 0 transcript_id "g26.t1"; gene_id "g26"; ! chrI AUGUSTUS CDS 164828 164986 0.9 + 2 transcript_id "g26.t1"; gene_id "g26"; --- 984,985 ---- ! chrI AUGUSTUS CDS 164020 164104 0.98 + 0 transcript_id "g26.t1"; gene_id "g26"; ! chrI AUGUSTUS CDS 164828 164986 0.95 + 2 transcript_id "g26.t1"; gene_id "g26"; *************** *** 989 **** ! chrI AUGUSTUS 3'-UTR 166344 166396 0.8 + . transcript_id "g26.t1"; gene_id "g26"; --- 989 ---- ! chrI AUGUSTUS 3'-UTR 166344 166396 0.81 + . transcript_id "g26.t1"; gene_id "g26"; *************** *** 1006,1007 **** ! chrI AUGUSTUS gene 168006 176120 0.02 + . g27 ! chrI AUGUSTUS transcript 168006 176120 0.02 + . g27.t1 --- 1006,1007 ---- ! chrI AUGUSTUS gene 168006 176120 0.05 + . g27 ! chrI AUGUSTUS transcript 168006 176120 0.05 + . g27.t1 *************** *** 1009 **** ! chrI AUGUSTUS 5'-UTR 168006 168112 0.23 + . transcript_id "g27.t1"; gene_id "g27"; --- 1009 ---- ! chrI AUGUSTUS 5'-UTR 168006 168112 0.33 + . transcript_id "g27.t1"; gene_id "g27"; *************** *** 1011,1012 **** ! chrI AUGUSTUS initial 168113 168433 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS internal 172005 172171 0.73 + 0 transcript_id "g27.t1"; gene_id "g27"; --- 1011,1012 ---- ! chrI AUGUSTUS initial 168113 168433 0.83 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS internal 172005 172171 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; *************** *** 1014,1017 **** ! chrI AUGUSTUS internal 173926 174023 0.83 + 2 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS internal 174890 174985 0.67 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS terminal 175962 175964 0.3 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS intron 168434 172004 0.73 + . transcript_id "g27.t1"; gene_id "g27"; --- 1014,1017 ---- ! chrI AUGUSTUS internal 173926 174023 0.81 + 2 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS internal 174890 174985 0.74 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS terminal 175962 175964 0.36 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS intron 168434 172004 0.78 + . transcript_id "g27.t1"; gene_id "g27"; *************** *** 1020,1023 **** ! chrI AUGUSTUS intron 174024 174889 0.83 + . transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS intron 174986 175961 0.3 + . transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 168113 168433 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 172005 172171 0.73 + 0 transcript_id "g27.t1"; gene_id "g27"; --- 1020,1023 ---- ! chrI AUGUSTUS intron 174024 174889 0.81 + . transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS intron 174986 175961 0.36 + . transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 168113 168433 0.83 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 172005 172171 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; *************** *** 1025,1027 **** ! chrI AUGUSTUS CDS 173926 174023 0.83 + 2 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 174890 174985 0.67 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 175962 175964 0.3 + 0 transcript_id "g27.t1"; gene_id "g27"; --- 1025,1027 ---- ! chrI AUGUSTUS CDS 173926 174023 0.81 + 2 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 174890 174985 0.74 + 0 transcript_id "g27.t1"; gene_id "g27"; ! chrI AUGUSTUS CDS 175962 175964 0.36 + 0 transcript_id "g27.t1"; gene_id "g27"; *************** *** 1029 **** ! chrI AUGUSTUS 3'-UTR 175965 176120 0.11 + . transcript_id "g27.t1"; gene_id "g27"; --- 1029 ---- ! chrI AUGUSTUS 3'-UTR 175965 176120 0.16 + . transcript_id "g27.t1"; gene_id "g27"; *************** *** 1046,1047 **** ! chrI AUGUSTUS gene 177676 180252 0.44 + . g28 ! chrI AUGUSTUS transcript 177676 180252 0.44 + . g28.t1 --- 1046,1047 ---- ! chrI AUGUSTUS gene 177676 180252 0.36 + . g28 ! chrI AUGUSTUS transcript 177676 180252 0.36 + . g28.t1 *************** *** 1049,1050 **** ! chrI AUGUSTUS 5'-UTR 177676 177708 0.75 + . transcript_id "g28.t1"; gene_id "g28"; ! chrI AUGUSTUS 5'-UTR 179455 179481 0.79 + . transcript_id "g28.t1"; gene_id "g28"; --- 1049,1050 ---- ! chrI AUGUSTUS 5'-UTR 177676 177708 0.73 + . transcript_id "g28.t1"; gene_id "g28"; ! chrI AUGUSTUS 5'-UTR 179455 179481 0.86 + . transcript_id "g28.t1"; gene_id "g28"; *************** *** 1055 **** ! chrI AUGUSTUS 3'-UTR 179884 180252 0.73 + . transcript_id "g28.t1"; gene_id "g28"; --- 1055 ---- ! chrI AUGUSTUS 3'-UTR 179884 180252 0.61 + . transcript_id "g28.t1"; gene_id "g28"; *************** *** 1072,1073 **** ! chrI AUGUSTUS gene 185697 186101 0.22 + . g29 ! chrI AUGUSTUS transcript 185697 186101 0.22 + . g29.t1 --- 1072,1073 ---- ! chrI AUGUSTUS gene 185697 186101 0.19 + . g29 ! chrI AUGUSTUS transcript 185697 186101 0.19 + . g29.t1 *************** *** 1075 **** ! chrI AUGUSTUS 5'-UTR 185697 185757 0.9 + . transcript_id "g29.t1"; gene_id "g29"; --- 1075 ---- ! chrI AUGUSTUS 5'-UTR 185697 185757 0.96 + . transcript_id "g29.t1"; gene_id "g29"; *************** *** 1077,1081 **** ! chrI AUGUSTUS initial 185758 185919 0.99 + 0 transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS terminal 185986 186030 0.6 + 0 transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS intron 185920 185985 0.6 + . transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS CDS 185758 185919 0.99 + 0 transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS CDS 185986 186030 0.6 + 0 transcript_id "g29.t1"; gene_id "g29"; --- 1077,1081 ---- ! chrI AUGUSTUS initial 185758 185919 1 + 0 transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS terminal 185986 186030 0.64 + 0 transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS intron 185920 185985 0.64 + . transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS CDS 185758 185919 1 + 0 transcript_id "g29.t1"; gene_id "g29"; ! chrI AUGUSTUS CDS 185986 186030 0.64 + 0 transcript_id "g29.t1"; gene_id "g29"; *************** *** 1083 **** ! chrI AUGUSTUS 3'-UTR 186031 186101 0.24 + . transcript_id "g29.t1"; gene_id "g29"; --- 1083 ---- ! chrI AUGUSTUS 3'-UTR 186031 186101 0.2 + . transcript_id "g29.t1"; gene_id "g29"; *************** *** 1097,1098 **** ! chrI AUGUSTUS gene 192317 209633 0.05 + . g30 ! chrI AUGUSTUS transcript 192317 209633 0.05 + . g30.t1 --- 1097,1098 ---- ! chrI AUGUSTUS gene 192317 209633 0.11 + . g30 ! chrI AUGUSTUS transcript 192317 209633 0.11 + . g30.t1 *************** *** 1100 **** ! chrI AUGUSTUS 5'-UTR 192317 192428 0.41 + . transcript_id "g30.t1"; gene_id "g30"; --- 1100 ---- ! chrI AUGUSTUS 5'-UTR 192317 192428 0.43 + . transcript_id "g30.t1"; gene_id "g30"; *************** *** 1102 **** ! chrI AUGUSTUS initial 192429 192748 0.93 + 0 transcript_id "g30.t1"; gene_id "g30"; --- 1102 ---- ! chrI AUGUSTUS initial 192429 192748 0.85 + 0 transcript_id "g30.t1"; gene_id "g30"; *************** *** 1104,1109 **** ! chrI AUGUSTUS internal 195400 196616 0.54 + 2 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 197190 197285 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 200011 200150 0.97 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 201731 202169 0.99 + 1 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 203575 203865 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 204926 205309 1 + 0 transcript_id "g30.t1"; gene_id "g30"; --- 1104,1109 ---- ! chrI AUGUSTUS internal 195400 196616 0.61 + 2 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 197190 197285 1 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 200011 200150 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 201731 202169 1 + 1 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 203575 203865 1 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS internal 204926 205309 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; *************** *** 1112 **** ! chrI AUGUSTUS intron 192749 192844 0.93 + . transcript_id "g30.t1"; gene_id "g30"; --- 1112 ---- ! chrI AUGUSTUS intron 192749 192844 0.85 + . transcript_id "g30.t1"; gene_id "g30"; *************** *** 1114,1121 **** ! chrI AUGUSTUS intron 196617 197189 0.54 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 197286 200010 0.99 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 200151 201730 0.97 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 202170 203574 0.99 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 203866 204925 1 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 205310 207320 0.99 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 207840 209094 1 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 192429 192748 0.93 + 0 transcript_id "g30.t1"; gene_id "g30"; --- 1114,1121 ---- ! chrI AUGUSTUS intron 196617 197189 0.61 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 197286 200010 1 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 200151 201730 0.98 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 202170 203574 1 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 203866 204925 0.98 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 205310 207320 1 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS intron 207840 209094 0.98 + . transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 192429 192748 0.85 + 0 transcript_id "g30.t1"; gene_id "g30"; *************** *** 1123,1128 **** ! chrI AUGUSTUS CDS 195400 196616 0.54 + 2 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 197190 197285 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 200011 200150 0.97 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 201731 202169 0.99 + 1 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 203575 203865 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 204926 205309 1 + 0 transcript_id "g30.t1"; gene_id "g30"; --- 1123,1128 ---- ! chrI AUGUSTUS CDS 195400 196616 0.61 + 2 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 197190 197285 1 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 200011 200150 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 201731 202169 1 + 1 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 203575 203865 1 + 0 transcript_id "g30.t1"; gene_id "g30"; ! chrI AUGUSTUS CDS 204926 205309 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; *************** *** 1132 **** ! chrI AUGUSTUS 3'-UTR 209335 209633 0.29 + . transcript_id "g30.t1"; gene_id "g30"; --- 1132 ---- ! chrI AUGUSTUS 3'-UTR 209335 209633 0.41 + . transcript_id "g30.t1"; gene_id "g30"; *************** *** 1160,1161 **** ! chrI AUGUSTUS gene 216127 219441 0.09 + . g31 ! chrI AUGUSTUS transcript 216127 219441 0.09 + . g31.t1 --- 1160,1161 ---- ! chrI AUGUSTUS gene 216127 219441 0.12 + . g31 ! chrI AUGUSTUS transcript 216127 219441 0.12 + . g31.t1 *************** *** 1163 **** ! chrI AUGUSTUS 5'-UTR 216127 216217 0.3 + . transcript_id "g31.t1"; gene_id "g31"; --- 1163 ---- ! chrI AUGUSTUS 5'-UTR 216127 216217 0.29 + . transcript_id "g31.t1"; gene_id "g31"; *************** *** 1165,1166 **** ! chrI AUGUSTUS initial 216218 216284 0.42 + 0 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS internal 217090 217193 0.98 + 2 transcript_id "g31.t1"; gene_id "g31"; --- 1165,1166 ---- ! chrI AUGUSTUS initial 216218 216284 0.45 + 0 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS internal 217090 217193 0.93 + 2 transcript_id "g31.t1"; gene_id "g31"; *************** *** 1168,1170 **** ! chrI AUGUSTUS internal 218964 219165 0.99 + 1 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS terminal 219218 219418 0.6 + 0 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS intron 216285 217089 0.41 + . transcript_id "g31.t1"; gene_id "g31"; --- 1168,1170 ---- ! chrI AUGUSTUS internal 218964 219165 1 + 1 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS terminal 219218 219418 0.72 + 0 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS intron 216285 217089 0.42 + . transcript_id "g31.t1"; gene_id "g31"; *************** *** 1173,1175 **** ! chrI AUGUSTUS intron 219166 219217 0.6 + . transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS CDS 216218 216284 0.42 + 0 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS CDS 217090 217193 0.98 + 2 transcript_id "g31.t1"; gene_id "g31"; --- 1173,1175 ---- ! chrI AUGUSTUS intron 219166 219217 0.72 + . transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS CDS 216218 216284 0.45 + 0 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS CDS 217090 217193 0.93 + 2 transcript_id "g31.t1"; gene_id "g31"; *************** *** 1177,1178 **** ! chrI AUGUSTUS CDS 218964 219165 0.99 + 1 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS CDS 219218 219418 0.6 + 0 transcript_id "g31.t1"; gene_id "g31"; --- 1177,1178 ---- ! chrI AUGUSTUS CDS 218964 219165 1 + 1 transcript_id "g31.t1"; gene_id "g31"; ! chrI AUGUSTUS CDS 219218 219418 0.72 + 0 transcript_id "g31.t1"; gene_id "g31"; *************** *** 1180 **** ! chrI AUGUSTUS 3'-UTR 219419 219441 0.45 + . transcript_id "g31.t1"; gene_id "g31"; --- 1180 ---- ! chrI AUGUSTUS 3'-UTR 219419 219441 0.5 + . transcript_id "g31.t1"; gene_id "g31"; *************** *** 1198,1199 **** ! chrI AUGUSTUS gene 219479 222306 0.35 - . g32 ! chrI AUGUSTUS transcript 219479 222306 0.35 - . g32.t1 --- 1198,1199 ---- ! chrI AUGUSTUS gene 219479 222306 0.36 - . g32 ! chrI AUGUSTUS transcript 219479 222306 0.36 - . g32.t1 *************** *** 1201 **** ! chrI AUGUSTUS 3'-UTR 219479 219546 0.88 - . transcript_id "g32.t1"; gene_id "g32"; --- 1201 ---- ! chrI AUGUSTUS 3'-UTR 219479 219546 0.87 - . transcript_id "g32.t1"; gene_id "g32"; *************** *** 1205,1206 **** ! chrI AUGUSTUS internal 222083 222201 1 - 2 transcript_id "g32.t1"; gene_id "g32"; ! chrI AUGUSTUS initial 222243 222264 0.4 - 0 transcript_id "g32.t1"; gene_id "g32"; --- 1205,1206 ---- ! chrI AUGUSTUS internal 222083 222201 0.99 - 2 transcript_id "g32.t1"; gene_id "g32"; ! chrI AUGUSTUS initial 222243 222264 0.41 - 0 transcript_id "g32.t1"; gene_id "g32"; *************** *** 1208 **** ! chrI AUGUSTUS intron 220930 222082 1 - . transcript_id "g32.t1"; gene_id "g32"; --- 1208 ---- ! chrI AUGUSTUS intron 220930 222082 0.99 - . transcript_id "g32.t1"; gene_id "g32"; *************** *** 1212,1213 **** ! chrI AUGUSTUS CDS 222083 222201 1 - 2 transcript_id "g32.t1"; gene_id "g32"; ! chrI AUGUSTUS CDS 222243 222264 0.4 - 0 transcript_id "g32.t1"; gene_id "g32"; --- 1212,1213 ---- ! chrI AUGUSTUS CDS 222083 222201 0.99 - 2 transcript_id "g32.t1"; gene_id "g32"; ! chrI AUGUSTUS CDS 222243 222264 0.41 - 0 transcript_id "g32.t1"; gene_id "g32"; *************** *** 1215 **** ! chrI AUGUSTUS 5'-UTR 222265 222306 0.4 - . transcript_id "g32.t1"; gene_id "g32"; --- 1215 ---- ! chrI AUGUSTUS 5'-UTR 222265 222306 0.39 - . transcript_id "g32.t1"; gene_id "g32"; *************** *** 1232,1233 **** ! chrI AUGUSTUS gene 223306 233186 0.12 - . g33 ! chrI AUGUSTUS transcript 223306 233186 0.12 - . g33.t1 --- 1232,1233 ---- ! chrI AUGUSTUS gene 223306 233186 0.16 - . g33 ! chrI AUGUSTUS transcript 223306 233186 0.16 - . g33.t1 *************** *** 1235 **** ! chrI AUGUSTUS 3'-UTR 223306 223353 0.99 - . transcript_id "g33.t1"; gene_id "g33"; --- 1235 ---- ! chrI AUGUSTUS 3'-UTR 223306 223353 0.98 - . transcript_id "g33.t1"; gene_id "g33"; *************** *** 1238,1239 **** ! chrI AUGUSTUS internal 223630 223728 0.96 - 2 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS internal 224302 224476 0.75 - 0 transcript_id "g33.t1"; gene_id "g33"; --- 1238,1239 ---- ! chrI AUGUSTUS internal 223630 223728 0.97 - 2 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS internal 224302 224476 0.82 - 0 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1241,1243 **** ! chrI AUGUSTUS internal 225618 226411 0.99 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS internal 226801 226944 0.67 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS internal 226992 227111 0.52 - 0 transcript_id "g33.t1"; gene_id "g33"; --- 1241,1243 ---- ! chrI AUGUSTUS internal 225618 226411 1 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS internal 226801 226944 0.8 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS internal 226992 227111 0.51 - 0 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1247 **** ! chrI AUGUSTUS internal 230294 230412 1 - 2 transcript_id "g33.t1"; gene_id "g33"; --- 1247 ---- ! chrI AUGUSTUS internal 230294 230412 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1250 **** ! chrI AUGUSTUS internal 231185 231432 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; --- 1250 ---- ! chrI AUGUSTUS internal 231185 231432 1 - 2 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1252 **** ! chrI AUGUSTUS internal 232848 233014 0.88 - 0 transcript_id "g33.t1"; gene_id "g33"; --- 1252 ---- ! chrI AUGUSTUS internal 232848 233014 0.87 - 0 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1254,1255 **** ! chrI AUGUSTUS intron 223572 223629 0.96 - . transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS intron 223729 224301 0.72 - . transcript_id "g33.t1"; gene_id "g33"; --- 1254,1255 ---- ! chrI AUGUSTUS intron 223572 223629 0.97 - . transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS intron 223729 224301 0.79 - . transcript_id "g33.t1"; gene_id "g33"; *************** *** 1257,1259 **** ! chrI AUGUSTUS intron 224890 225617 0.99 - . transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS intron 226412 226800 0.67 - . transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS intron 226945 226991 0.52 - . transcript_id "g33.t1"; gene_id "g33"; --- 1257,1259 ---- ! chrI AUGUSTUS intron 224890 225617 1 - . transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS intron 226412 226800 0.8 - . transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS intron 226945 226991 0.51 - . transcript_id "g33.t1"; gene_id "g33"; *************** *** 1264 **** ! chrI AUGUSTUS intron 230413 230466 0.97 - . transcript_id "g33.t1"; gene_id "g33"; --- 1264 ---- ! chrI AUGUSTUS intron 230413 230466 0.96 - . transcript_id "g33.t1"; gene_id "g33"; *************** *** 1268 **** ! chrI AUGUSTUS intron 231596 232847 0.88 - . transcript_id "g33.t1"; gene_id "g33"; --- 1268 ---- ! chrI AUGUSTUS intron 231596 232847 0.87 - . transcript_id "g33.t1"; gene_id "g33"; *************** *** 1271,1272 **** ! chrI AUGUSTUS CDS 223630 223728 0.96 - 2 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS CDS 224302 224476 0.75 - 0 transcript_id "g33.t1"; gene_id "g33"; --- 1271,1272 ---- ! chrI AUGUSTUS CDS 223630 223728 0.97 - 2 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS CDS 224302 224476 0.82 - 0 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1274,1276 **** ! chrI AUGUSTUS CDS 225618 226411 0.99 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS CDS 226801 226944 0.67 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS CDS 226992 227111 0.52 - 0 transcript_id "g33.t1"; gene_id "g33"; --- 1274,1276 ---- ! chrI AUGUSTUS CDS 225618 226411 1 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS CDS 226801 226944 0.8 - 0 transcript_id "g33.t1"; gene_id "g33"; ! chrI AUGUSTUS CDS 226992 227111 0.51 - 0 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1280 **** ! chrI AUGUSTUS CDS 230294 230412 1 - 2 transcript_id "g33.t1"; gene_id "g33"; --- 1280 ---- ! chrI AUGUSTUS CDS 230294 230412 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1283 **** ! chrI AUGUSTUS CDS 231185 231432 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; --- 1283 ---- ! chrI AUGUSTUS CDS 231185 231432 1 - 2 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1285 **** ! chrI AUGUSTUS CDS 232848 233014 0.88 - 0 transcript_id "g33.t1"; gene_id "g33"; --- 1285 ---- ! chrI AUGUSTUS CDS 232848 233014 0.87 - 0 transcript_id "g33.t1"; gene_id "g33"; *************** *** 1288 **** ! chrI AUGUSTUS 5'-UTR 233101 233186 0.51 - . transcript_id "g33.t1"; gene_id "g33"; --- 1288 ---- ! chrI AUGUSTUS 5'-UTR 233101 233186 0.46 - . transcript_id "g33.t1"; gene_id "g33"; *************** *** 1315,1316 **** ! chrI AUGUSTUS gene 233745 234876 0.7 - . g34 ! chrI AUGUSTUS transcript 233745 234876 0.7 - . g34.t1 --- 1315,1316 ---- ! chrI AUGUSTUS gene 233745 234876 0.62 - . g34 ! chrI AUGUSTUS transcript 233745 234876 0.62 - . g34.t1 *************** *** 1318 **** ! chrI AUGUSTUS 3'-UTR 233745 233895 0.76 - . transcript_id "g34.t1"; gene_id "g34"; --- 1318 ---- ! chrI AUGUSTUS 3'-UTR 233745 233895 0.73 - . transcript_id "g34.t1"; gene_id "g34"; *************** *** 1320 **** ! chrI AUGUSTUS terminal 233896 233976 0.95 - 0 transcript_id "g34.t1"; gene_id "g34"; --- 1320 ---- ! chrI AUGUSTUS terminal 233896 233976 0.93 - 0 transcript_id "g34.t1"; gene_id "g34"; *************** *** 1325 **** ! chrI AUGUSTUS intron 233977 234055 0.95 - . transcript_id "g34.t1"; gene_id "g34"; --- 1325 ---- ! chrI AUGUSTUS intron 233977 234055 0.93 - . transcript_id "g34.t1"; gene_id "g34"; *************** *** 1329 **** ! chrI AUGUSTUS CDS 233896 233976 0.95 - 0 transcript_id "g34.t1"; gene_id "g34"; --- 1329 ---- ! chrI AUGUSTUS CDS 233896 233976 0.93 - 0 transcript_id "g34.t1"; gene_id "g34"; *************** *** 1335 **** ! chrI AUGUSTUS 5'-UTR 234848 234876 0.91 - . transcript_id "g34.t1"; gene_id "g34"; --- 1335 ---- ! chrI AUGUSTUS 5'-UTR 234848 234876 0.83 - . transcript_id "g34.t1"; gene_id "g34"; *************** *** 1351,1352 **** ! chrI AUGUSTUS gene 235606 241206 0.72 - . g35 ! chrI AUGUSTUS transcript 235606 241206 0.72 - . g35.t1 --- 1351,1352 ---- ! chrI AUGUSTUS gene 235606 241206 0.81 - . g35 ! chrI AUGUSTUS transcript 235606 241206 0.81 - . g35.t1 *************** *** 1354 **** ! chrI AUGUSTUS 3'-UTR 235606 235641 0.95 - . transcript_id "g35.t1"; gene_id "g35"; --- 1354 ---- ! chrI AUGUSTUS 3'-UTR 235606 235641 0.94 - . transcript_id "g35.t1"; gene_id "g35"; *************** *** 1383 **** ! chrI AUGUSTUS 5'-UTR 241073 241206 0.77 - . transcript_id "g35.t1"; gene_id "g35"; --- 1383 ---- ! chrI AUGUSTUS 5'-UTR 241073 241206 0.86 - . transcript_id "g35.t1"; gene_id "g35"; *************** *** 1411,1412 **** ! chrI AUGUSTUS gene 242107 247297 0.15 + . g36 ! chrI AUGUSTUS transcript 242107 247297 0.15 + . g36.t1 --- 1411,1412 ---- ! chrI AUGUSTUS gene 242107 247297 0.1 + . g36 ! chrI AUGUSTUS transcript 242107 247297 0.1 + . g36.t1 *************** *** 1414 **** ! chrI AUGUSTUS 5'-UTR 242107 242230 0.25 + . transcript_id "g36.t1"; gene_id "g36"; --- 1414 ---- ! chrI AUGUSTUS 5'-UTR 242107 242230 0.28 + . transcript_id "g36.t1"; gene_id "g36"; *************** *** 1417,1419 **** ! chrI AUGUSTUS internal 243404 243593 0.88 + 1 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS internal 244086 244205 0.98 + 0 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS internal 244359 244559 0.92 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1417,1419 ---- ! chrI AUGUSTUS internal 243404 243593 0.79 + 1 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS internal 244086 244205 0.97 + 0 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS internal 244359 244559 0.91 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1421 **** ! chrI AUGUSTUS internal 245527 245646 1 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1421 ---- ! chrI AUGUSTUS internal 245527 245646 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1423,1427 **** ! chrI AUGUSTUS terminal 247153 247224 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 242365 243403 0.94 + . transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 243594 244085 0.91 + . transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 244206 244358 0.96 + . transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 244560 244776 0.83 + . transcript_id "g36.t1"; gene_id "g36"; --- 1423,1427 ---- ! chrI AUGUSTUS terminal 247153 247224 1 + 0 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 242365 243403 0.88 + . transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 243594 244085 0.88 + . transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 244206 244358 0.97 + . transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS intron 244560 244776 0.81 + . transcript_id "g36.t1"; gene_id "g36"; *************** *** 1429 **** ! chrI AUGUSTUS intron 245647 246140 1 + . transcript_id "g36.t1"; gene_id "g36"; --- 1429 ---- ! chrI AUGUSTUS intron 245647 246140 0.99 + . transcript_id "g36.t1"; gene_id "g36"; *************** *** 1432,1434 **** ! chrI AUGUSTUS CDS 243404 243593 0.88 + 1 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS CDS 244086 244205 0.98 + 0 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS CDS 244359 244559 0.92 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1432,1434 ---- ! chrI AUGUSTUS CDS 243404 243593 0.79 + 1 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS CDS 244086 244205 0.97 + 0 transcript_id "g36.t1"; gene_id "g36"; ! chrI AUGUSTUS CDS 244359 244559 0.91 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1436 **** ! chrI AUGUSTUS CDS 245527 245646 1 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1436 ---- ! chrI AUGUSTUS CDS 245527 245646 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1438 **** ! chrI AUGUSTUS CDS 247153 247224 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; --- 1438 ---- ! chrI AUGUSTUS CDS 247153 247224 1 + 0 transcript_id "g36.t1"; gene_id "g36"; *************** *** 1440 **** ! chrI AUGUSTUS 3'-UTR 247225 247297 0.67 + . transcript_id "g36.t1"; gene_id "g36"; --- 1440 ---- ! chrI AUGUSTUS 3'-UTR 247225 247297 0.66 + . transcript_id "g36.t1"; gene_id "g36"; *************** *** 1460,1461 **** ! chrI AUGUSTUS gene 247367 254902 0.06 + . g37 ! chrI AUGUSTUS transcript 247367 254902 0.06 + . g37.t1 --- 1460,1461 ---- ! chrI AUGUSTUS gene 247367 254902 0.02 + . g37 ! chrI AUGUSTUS transcript 247367 254902 0.02 + . g37.t1 *************** *** 1463,1464 **** ! chrI AUGUSTUS 5'-UTR 247367 247473 0.2 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS 5'-UTR 250132 250157 0.86 + . transcript_id "g37.t1"; gene_id "g37"; --- 1463,1464 ---- ! chrI AUGUSTUS 5'-UTR 247367 247473 0.12 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS 5'-UTR 250132 250157 0.75 + . transcript_id "g37.t1"; gene_id "g37"; *************** *** 1466,1470 **** ! chrI AUGUSTUS initial 250158 250212 0.85 + 0 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 250272 250389 0.97 + 2 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 250712 250837 0.97 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 251468 251604 0.99 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 252340 252683 0.83 + 2 transcript_id "g37.t1"; gene_id "g37"; --- 1466,1470 ---- ! chrI AUGUSTUS initial 250158 250212 0.76 + 0 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 250272 250389 1 + 2 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 250712 250837 0.93 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 251468 251604 1 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS internal 252340 252683 0.87 + 2 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1473 **** ! chrI AUGUSTUS internal 253698 253849 1 + 2 transcript_id "g37.t1"; gene_id "g37"; --- 1473 ---- ! chrI AUGUSTUS internal 253698 253849 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1476 **** ! chrI AUGUSTUS internal 254411 254583 1 + 2 transcript_id "g37.t1"; gene_id "g37"; --- 1476 ---- ! chrI AUGUSTUS internal 254411 254583 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1478,1482 **** ! chrI AUGUSTUS intron 250213 250271 0.98 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 250390 250711 0.95 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 250838 251467 0.98 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 251605 252339 0.99 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 252684 252882 1 + . transcript_id "g37.t1"; gene_id "g37"; --- 1478,1482 ---- ! chrI AUGUSTUS intron 250213 250271 1 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 250390 250711 0.93 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 250838 251467 0.93 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 251605 252339 1 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS intron 252684 252882 0.99 + . transcript_id "g37.t1"; gene_id "g37"; *************** *** 1485 **** ! chrI AUGUSTUS intron 253850 253950 1 + . transcript_id "g37.t1"; gene_id "g37"; --- 1485 ---- ! chrI AUGUSTUS intron 253850 253950 0.99 + . transcript_id "g37.t1"; gene_id "g37"; *************** *** 1488,1493 **** ! chrI AUGUSTUS intron 254584 254695 1 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 250158 250212 0.85 + 0 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 250272 250389 0.97 + 2 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 250712 250837 0.97 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 251468 251604 0.99 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 252340 252683 0.83 + 2 transcript_id "g37.t1"; gene_id "g37"; --- 1488,1493 ---- ! chrI AUGUSTUS intron 254584 254695 0.99 + . transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 250158 250212 0.76 + 0 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 250272 250389 1 + 2 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 250712 250837 0.93 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 251468 251604 1 + 1 transcript_id "g37.t1"; gene_id "g37"; ! chrI AUGUSTUS CDS 252340 252683 0.87 + 2 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1496 **** ! chrI AUGUSTUS CDS 253698 253849 1 + 2 transcript_id "g37.t1"; gene_id "g37"; --- 1496 ---- ! chrI AUGUSTUS CDS 253698 253849 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1499 **** ! chrI AUGUSTUS CDS 254411 254583 1 + 2 transcript_id "g37.t1"; gene_id "g37"; --- 1499 ---- ! chrI AUGUSTUS CDS 254411 254583 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; *************** *** 1502 **** ! chrI AUGUSTUS 3'-UTR 254801 254902 0.47 + . transcript_id "g37.t1"; gene_id "g37"; --- 1502 ---- ! chrI AUGUSTUS 3'-UTR 254801 254902 0.45 + . transcript_id "g37.t1"; gene_id "g37"; *************** *** 1523,1524 **** ! chrI AUGUSTUS gene 255928 272896 0.06 - . g38 ! chrI AUGUSTUS transcript 255928 272896 0.06 - . g38.t1 --- 1523,1524 ---- ! chrI AUGUSTUS gene 255928 272896 0.08 - . g38 ! chrI AUGUSTUS transcript 255928 272896 0.08 - . g38.t1 *************** *** 1526 **** ! chrI AUGUSTUS 3'-UTR 255928 256152 0.62 - . transcript_id "g38.t1"; gene_id "g38"; --- 1526 ---- ! chrI AUGUSTUS 3'-UTR 255928 256152 0.61 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1529,1530 **** ! chrI AUGUSTUS internal 257053 257408 0.59 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 258592 258833 0.73 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1529,1530 ---- ! chrI AUGUSTUS internal 257053 257408 0.65 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 258592 258833 0.77 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1533,1534 **** ! chrI AUGUSTUS internal 259257 259520 0.96 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 260371 260630 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; --- 1533,1534 ---- ! chrI AUGUSTUS internal 259257 259520 0.91 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 260371 260630 1 - 2 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1537 **** ! chrI AUGUSTUS internal 261662 261785 1 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1537 ---- ! chrI AUGUSTUS internal 261662 261785 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1540,1541 **** ! chrI AUGUSTUS internal 264237 264452 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 264524 264663 0.98 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1540,1541 ---- ! chrI AUGUSTUS internal 264237 264452 1 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 264524 264663 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1543 **** ! chrI AUGUSTUS internal 265488 265570 0.98 - 0 transcript_id "g38.t1"; gene_id "g38"; --- 1543 ---- ! chrI AUGUSTUS internal 265488 265570 0.95 - 0 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1551,1552 **** ! chrI AUGUSTUS internal 268805 268931 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 268977 269192 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; --- 1551,1552 ---- ! chrI AUGUSTUS internal 268805 268931 1 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS internal 268977 269192 1 - 0 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1554 **** ! chrI AUGUSTUS internal 270206 270392 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1554 ---- ! chrI AUGUSTUS internal 270206 270392 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1556 **** ! chrI AUGUSTUS internal 271638 272118 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1556 ---- ! chrI AUGUSTUS internal 271638 272118 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1559 **** ! chrI AUGUSTUS initial 272688 272867 0.49 - 0 transcript_id "g38.t1"; gene_id "g38"; --- 1559 ---- ! chrI AUGUSTUS initial 272688 272867 0.5 - 0 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1561 **** ! chrI AUGUSTUS intron 257409 258591 0.6 - . transcript_id "g38.t1"; gene_id "g38"; --- 1561 ---- ! chrI AUGUSTUS intron 257409 258591 0.67 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1564,1565 **** ! chrI AUGUSTUS intron 259218 259256 0.96 - . transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS intron 259521 260370 0.99 - . transcript_id "g38.t1"; gene_id "g38"; --- 1564,1565 ---- ! chrI AUGUSTUS intron 259218 259256 0.91 - . transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS intron 259521 260370 1 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1570 **** ! chrI AUGUSTUS intron 262439 262480 0.97 - . transcript_id "g38.t1"; gene_id "g38"; --- 1570 ---- ! chrI AUGUSTUS intron 262439 262480 0.98 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1572 **** ! chrI AUGUSTUS intron 264453 264523 0.98 - . transcript_id "g38.t1"; gene_id "g38"; --- 1572 ---- ! chrI AUGUSTUS intron 264453 264523 0.99 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1574 **** ! chrI AUGUSTUS intron 264846 265487 0.98 - . transcript_id "g38.t1"; gene_id "g38"; --- 1574 ---- ! chrI AUGUSTUS intron 264846 265487 0.95 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1583 **** ! chrI AUGUSTUS intron 268932 268976 0.99 - . transcript_id "g38.t1"; gene_id "g38"; --- 1583 ---- ! chrI AUGUSTUS intron 268932 268976 1 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1585 **** ! chrI AUGUSTUS intron 269357 270205 0.97 - . transcript_id "g38.t1"; gene_id "g38"; --- 1585 ---- ! chrI AUGUSTUS intron 269357 270205 0.99 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1587 **** ! chrI AUGUSTUS intron 270665 271637 0.97 - . transcript_id "g38.t1"; gene_id "g38"; --- 1587 ---- ! chrI AUGUSTUS intron 270665 271637 0.99 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1590 **** ! chrI AUGUSTUS intron 272634 272687 0.49 - . transcript_id "g38.t1"; gene_id "g38"; --- 1590 ---- ! chrI AUGUSTUS intron 272634 272687 0.53 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1592,1593 **** ! chrI AUGUSTUS CDS 257053 257408 0.59 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 258592 258833 0.73 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1592,1593 ---- ! chrI AUGUSTUS CDS 257053 257408 0.65 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 258592 258833 0.77 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1596,1597 **** ! chrI AUGUSTUS CDS 259257 259520 0.96 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 260371 260630 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; --- 1596,1597 ---- ! chrI AUGUSTUS CDS 259257 259520 0.91 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 260371 260630 1 - 2 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1600 **** ! chrI AUGUSTUS CDS 261662 261785 1 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1600 ---- ! chrI AUGUSTUS CDS 261662 261785 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1603,1604 **** ! chrI AUGUSTUS CDS 264237 264452 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 264524 264663 0.98 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1603,1604 ---- ! chrI AUGUSTUS CDS 264237 264452 1 - 2 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 264524 264663 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1606 **** ! chrI AUGUSTUS CDS 265488 265570 0.98 - 0 transcript_id "g38.t1"; gene_id "g38"; --- 1606 ---- ! chrI AUGUSTUS CDS 265488 265570 0.95 - 0 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1614,1615 **** ! chrI AUGUSTUS CDS 268805 268931 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 268977 269192 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; --- 1614,1615 ---- ! chrI AUGUSTUS CDS 268805 268931 1 - 0 transcript_id "g38.t1"; gene_id "g38"; ! chrI AUGUSTUS CDS 268977 269192 1 - 0 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1617 **** ! chrI AUGUSTUS CDS 270206 270392 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1617 ---- ! chrI AUGUSTUS CDS 270206 270392 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1619 **** ! chrI AUGUSTUS CDS 271638 272118 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; --- 1619 ---- ! chrI AUGUSTUS CDS 271638 272118 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1622 **** ! chrI AUGUSTUS CDS 272688 272867 0.49 - 0 transcript_id "g38.t1"; gene_id "g38"; --- 1622 ---- ! chrI AUGUSTUS CDS 272688 272867 0.5 - 0 transcript_id "g38.t1"; gene_id "g38"; *************** *** 1624 **** ! chrI AUGUSTUS 5'-UTR 272868 272896 0.44 - . transcript_id "g38.t1"; gene_id "g38"; --- 1624 ---- ! chrI AUGUSTUS 5'-UTR 272868 272896 0.51 - . transcript_id "g38.t1"; gene_id "g38"; *************** *** 1659,1660 **** ! chrI AUGUSTUS gene 278477 280841 0.12 + . g39 ! chrI AUGUSTUS transcript 278477 280841 0.12 + . g39.t1 --- 1659,1660 ---- ! chrI AUGUSTUS gene 278477 280841 0.14 + . g39 ! chrI AUGUSTUS transcript 278477 280841 0.14 + . g39.t1 *************** *** 1662,1663 **** ! chrI AUGUSTUS 5'-UTR 278477 278489 0.27 + . transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS 5'-UTR 279788 279847 0.84 + . transcript_id "g39.t1"; gene_id "g39"; --- 1662,1663 ---- ! chrI AUGUSTUS 5'-UTR 278477 278489 0.36 + . transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS 5'-UTR 279788 279847 0.76 + . transcript_id "g39.t1"; gene_id "g39"; *************** *** 1665,1669 **** ! chrI AUGUSTUS initial 279848 279916 0.85 + 0 transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS terminal 280388 280801 0.97 + 0 transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS intron 279917 280387 1 + . transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS CDS 279848 279916 0.85 + 0 transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS CDS 280388 280801 0.97 + 0 transcript_id "g39.t1"; gene_id "g39"; --- 1665,1669 ---- ! chrI AUGUSTUS initial 279848 279916 0.75 + 0 transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS terminal 280388 280801 0.99 + 0 transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS intron 279917 280387 0.99 + . transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS CDS 279848 279916 0.75 + 0 transcript_id "g39.t1"; gene_id "g39"; ! chrI AUGUSTUS CDS 280388 280801 0.99 + 0 transcript_id "g39.t1"; gene_id "g39"; *************** *** 1671 **** ! chrI AUGUSTUS 3'-UTR 280802 280841 0.47 + . transcript_id "g39.t1"; gene_id "g39"; --- 1671 ---- ! chrI AUGUSTUS 3'-UTR 280802 280841 0.53 + . transcript_id "g39.t1"; gene_id "g39"; *************** *** 1687,1688 **** ! chrI AUGUSTUS gene 281540 291476 0.12 - . g40 ! chrI AUGUSTUS transcript 281540 291476 0.12 - . g40.t1 --- 1687,1688 ---- ! chrI AUGUSTUS gene 281540 291476 0.16 - . g40 ! chrI AUGUSTUS transcript 281540 291476 0.16 - . g40.t1 *************** *** 1690 **** ! chrI AUGUSTUS 3'-UTR 281540 281620 0.64 - . transcript_id "g40.t1"; gene_id "g40"; --- 1690 ---- ! chrI AUGUSTUS 3'-UTR 281540 281620 0.6 - . transcript_id "g40.t1"; gene_id "g40"; *************** *** 1695 **** ! chrI AUGUSTUS internal 286071 286181 0.96 - 0 transcript_id "g40.t1"; gene_id "g40"; --- 1695 ---- ! chrI AUGUSTUS internal 286071 286181 0.97 - 0 transcript_id "g40.t1"; gene_id "g40"; *************** *** 1699,1700 **** ! chrI AUGUSTUS internal 289644 289754 0.26 - 0 transcript_id "g40.t1"; gene_id "g40"; ! chrI AUGUSTUS initial 291279 291401 0.27 - 0 transcript_id "g40.t1"; gene_id "g40"; --- 1699,1700 ---- ! chrI AUGUSTUS internal 289644 289754 0.29 - 0 transcript_id "g40.t1"; gene_id "g40"; ! chrI AUGUSTUS initial 291279 291401 0.28 - 0 transcript_id "g40.t1"; gene_id "g40"; *************** *** 1703 **** ! chrI AUGUSTUS intron 284982 286070 0.96 - . transcript_id "g40.t1"; gene_id "g40"; --- 1703 ---- ! chrI AUGUSTUS intron 284982 286070 0.97 - . transcript_id "g40.t1"; gene_id "g40"; *************** *** 1707,1708 **** ! chrI AUGUSTUS intron 289589 289643 0.99 - . transcript_id "g40.t1"; gene_id "g40"; ! chrI AUGUSTUS intron 289755 291278 0.26 - . transcript_id "g40.t1"; gene_id "g40"; --- 1707,1708 ---- ! chrI AUGUSTUS intron 289589 289643 1 - . transcript_id "g40.t1"; gene_id "g40"; ! chrI AUGUSTUS intron 289755 291278 0.28 - . transcript_id "g40.t1"; gene_id "g40"; *************** *** 1712 **** ! chrI AUGUSTUS CDS 286071 286181 0.96 - 0 transcript_id "g40.t1"; gene_id "g40"; --- 1712 ---- ! chrI AUGUSTUS CDS 286071 286181 0.97 - 0 transcript_id "g40.t1"; gene_id "g40"; *************** *** 1716,1717 **** ! chrI AUGUSTUS CDS 289644 289754 0.26 - 0 transcript_id "g40.t1"; gene_id "g40"; ! chrI AUGUSTUS CDS 291279 291401 0.27 - 0 transcript_id "g40.t1"; gene_id "g40"; --- 1716,1717 ---- ! chrI AUGUSTUS CDS 289644 289754 0.29 - 0 transcript_id "g40.t1"; gene_id "g40"; ! chrI AUGUSTUS CDS 291279 291401 0.28 - 0 transcript_id "g40.t1"; gene_id "g40"; *************** *** 1719 **** ! chrI AUGUSTUS 5'-UTR 291402 291476 0.25 - . transcript_id "g40.t1"; gene_id "g40"; --- 1719 ---- ! chrI AUGUSTUS 5'-UTR 291402 291476 0.29 - . transcript_id "g40.t1"; gene_id "g40"; *************** *** 1738,1739 **** ! chrI AUGUSTUS gene 293167 297325 0.31 + . g41 ! chrI AUGUSTUS transcript 293167 297325 0.31 + . g41.t1 --- 1738,1739 ---- ! chrI AUGUSTUS gene 293167 297325 0.38 + . g41 ! chrI AUGUSTUS transcript 293167 297325 0.38 + . g41.t1 *************** *** 1741 **** ! chrI AUGUSTUS 5'-UTR 293167 293217 0.43 + . transcript_id "g41.t1"; gene_id "g41"; --- 1741 ---- ! chrI AUGUSTUS 5'-UTR 293167 293217 0.48 + . transcript_id "g41.t1"; gene_id "g41"; *************** *** 1743 **** ! chrI AUGUSTUS initial 293218 295212 1 + 0 transcript_id "g41.t1"; gene_id "g41"; --- 1743 ---- ! chrI AUGUSTUS initial 293218 295212 0.99 + 0 transcript_id "g41.t1"; gene_id "g41"; *************** *** 1745,1746 **** ! chrI AUGUSTUS intron 295213 296230 1 + . transcript_id "g41.t1"; gene_id "g41"; ! chrI AUGUSTUS CDS 293218 295212 1 + 0 transcript_id "g41.t1"; gene_id "g41"; --- 1745,1746 ---- ! chrI AUGUSTUS intron 295213 296230 0.99 + . transcript_id "g41.t1"; gene_id "g41"; ! chrI AUGUSTUS CDS 293218 295212 0.99 + 0 transcript_id "g41.t1"; gene_id "g41"; *************** *** 1749,1750 **** ! chrI AUGUSTUS 3'-UTR 296603 296656 0.82 + . transcript_id "g41.t1"; gene_id "g41"; ! chrI AUGUSTUS 3'-UTR 297066 297325 0.81 + . transcript_id "g41.t1"; gene_id "g41"; --- 1749,1750 ---- ! chrI AUGUSTUS 3'-UTR 296603 296656 0.85 + . transcript_id "g41.t1"; gene_id "g41"; ! chrI AUGUSTUS 3'-UTR 297066 297325 0.88 + . transcript_id "g41.t1"; gene_id "g41"; *************** *** 1774,1775 **** ! chrI AUGUSTUS gene 300047 302761 0.11 + . g42 ! chrI AUGUSTUS transcript 300047 302761 0.11 + . g42.t1 --- 1774,1775 ---- ! chrI AUGUSTUS gene 300047 302761 0.16 + . g42 ! chrI AUGUSTUS transcript 300047 302761 0.16 + . g42.t1 *************** *** 1777 **** ! chrI AUGUSTUS 5'-UTR 300047 300113 0.21 + . transcript_id "g42.t1"; gene_id "g42"; --- 1777 ---- ! chrI AUGUSTUS 5'-UTR 300047 300113 0.29 + . transcript_id "g42.t1"; gene_id "g42"; *************** *** 1781 **** ! chrI AUGUSTUS terminal 300721 302634 0.99 + 0 transcript_id "g42.t1"; gene_id "g42"; --- 1781 ---- ! chrI AUGUSTUS terminal 300721 302634 1 + 0 transcript_id "g42.t1"; gene_id "g42"; *************** *** 1786 **** ! chrI AUGUSTUS CDS 300721 302634 0.99 + 0 transcript_id "g42.t1"; gene_id "g42"; --- 1786 ---- ! chrI AUGUSTUS CDS 300721 302634 1 + 0 transcript_id "g42.t1"; gene_id "g42"; *************** *** 1788 **** ! chrI AUGUSTUS 3'-UTR 302635 302761 0.47 + . transcript_id "g42.t1"; gene_id "g42"; --- 1788 ---- ! chrI AUGUSTUS 3'-UTR 302635 302761 0.55 + . transcript_id "g42.t1"; gene_id "g42"; *************** *** 1810,1811 **** ! chrI AUGUSTUS gene 302765 306816 0.16 - . g43 ! chrI AUGUSTUS transcript 302765 306816 0.16 - . g43.t1 --- 1810,1811 ---- ! chrI AUGUSTUS gene 302765 306816 0.29 - . g43 ! chrI AUGUSTUS transcript 302765 306816 0.29 - . g43.t1 *************** *** 1813 **** ! chrI AUGUSTUS 3'-UTR 302765 302798 0.79 - . transcript_id "g43.t1"; gene_id "g43"; --- 1813 ---- ! chrI AUGUSTUS 3'-UTR 302765 302798 0.89 - . transcript_id "g43.t1"; gene_id "g43"; *************** *** 1818,1820 **** ! chrI AUGUSTUS internal 304249 304394 0.63 - 1 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS internal 304763 304845 0.38 - 0 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS internal 304900 305580 1 - 0 transcript_id "g43.t1"; gene_id "g43"; --- 1818,1820 ---- ! chrI AUGUSTUS internal 304249 304394 0.69 - 1 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS internal 304763 304845 0.39 - 0 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS internal 304900 305580 0.99 - 0 transcript_id "g43.t1"; gene_id "g43"; *************** *** 1828 **** ! chrI AUGUSTUS intron 304846 304899 0.98 - . transcript_id "g43.t1"; gene_id "g43"; --- 1828 ---- ! chrI AUGUSTUS intron 304846 304899 0.99 - . transcript_id "g43.t1"; gene_id "g43"; *************** *** 1835,1837 **** ! chrI AUGUSTUS CDS 304249 304394 0.63 - 1 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS CDS 304763 304845 0.38 - 0 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS CDS 304900 305580 1 - 0 transcript_id "g43.t1"; gene_id "g43"; --- 1835,1837 ---- ! chrI AUGUSTUS CDS 304249 304394 0.69 - 1 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS CDS 304763 304845 0.39 - 0 transcript_id "g43.t1"; gene_id "g43"; ! chrI AUGUSTUS CDS 304900 305580 0.99 - 0 transcript_id "g43.t1"; gene_id "g43"; *************** *** 1842 **** ! chrI AUGUSTUS 5'-UTR 306788 306816 0.77 - . transcript_id "g43.t1"; gene_id "g43"; --- 1842 ---- ! chrI AUGUSTUS 5'-UTR 306788 306816 0.79 - . transcript_id "g43.t1"; gene_id "g43"; *************** *** 1868,1869 **** ! chrI AUGUSTUS gene 307337 308860 0.19 + . g44 ! chrI AUGUSTUS transcript 307337 308860 0.19 + . g44.t1 --- 1868,1869 ---- ! chrI AUGUSTUS gene 307337 308860 0.16 + . g44 ! chrI AUGUSTUS transcript 307337 308860 0.16 + . g44.t1 *************** *** 1871 **** ! chrI AUGUSTUS 5'-UTR 307337 307410 0.4 + . transcript_id "g44.t1"; gene_id "g44"; --- 1871 ---- ! chrI AUGUSTUS 5'-UTR 307337 307410 0.38 + . transcript_id "g44.t1"; gene_id "g44"; *************** *** 1874,1875 **** ! chrI AUGUSTUS internal 307537 307891 0.98 + 1 transcript_id "g44.t1"; gene_id "g44"; ! chrI AUGUSTUS internal 307963 308542 1 + 0 transcript_id "g44.t1"; gene_id "g44"; --- 1874,1875 ---- ! chrI AUGUSTUS internal 307537 307891 0.97 + 1 transcript_id "g44.t1"; gene_id "g44"; ! chrI AUGUSTUS internal 307963 308542 0.99 + 0 transcript_id "g44.t1"; gene_id "g44"; *************** *** 1881,1882 **** ! chrI AUGUSTUS CDS 307537 307891 0.98 + 1 transcript_id "g44.t1"; gene_id "g44"; ! chrI AUGUSTUS CDS 307963 308542 1 + 0 transcript_id "g44.t1"; gene_id "g44"; --- 1881,1882 ---- ! chrI AUGUSTUS CDS 307537 307891 0.97 + 1 transcript_id "g44.t1"; gene_id "g44"; ! chrI AUGUSTUS CDS 307963 308542 0.99 + 0 transcript_id "g44.t1"; gene_id "g44"; *************** *** 1885 **** ! chrI AUGUSTUS 3'-UTR 308784 308860 0.49 + . transcript_id "g44.t1"; gene_id "g44"; --- 1885 ---- ! chrI AUGUSTUS 3'-UTR 308784 308860 0.46 + . transcript_id "g44.t1"; gene_id "g44"; *************** *** 1904,1905 **** ! chrI AUGUSTUS gene 308947 312101 0.08 + . g45 ! chrI AUGUSTUS transcript 308947 312101 0.08 + . g45.t1 --- 1904,1905 ---- ! chrI AUGUSTUS gene 308947 312101 0.05 + . g45 ! chrI AUGUSTUS transcript 308947 312101 0.05 + . g45.t1 *************** *** 1907 **** ! chrI AUGUSTUS 5'-UTR 308947 308977 0.28 + . transcript_id "g45.t1"; gene_id "g45"; --- 1907 ---- ! chrI AUGUSTUS 5'-UTR 308947 308977 0.32 + . transcript_id "g45.t1"; gene_id "g45"; *************** *** 1909,1910 **** ! chrI AUGUSTUS initial 308978 309210 0.92 + 0 transcript_id "g45.t1"; gene_id "g45"; ! chrI AUGUSTUS internal 309518 309677 0.91 + 1 transcript_id "g45.t1"; gene_id "g45"; --- 1909,1910 ---- ! chrI AUGUSTUS initial 308978 309210 0.91 + 0 transcript_id "g45.t1"; gene_id "g45"; ! chrI AUGUSTUS internal 309518 309677 0.92 + 1 transcript_id "g45.t1"; gene_id "g45"; *************** *** 1914 **** ! chrI AUGUSTUS terminal 311843 312046 0.99 + 0 transcript_id "g45.t1"; gene_id "g45"; --- 1914 ---- ! chrI AUGUSTUS terminal 311843 312046 0.96 + 0 transcript_id "g45.t1"; gene_id "g45"; *************** *** 1920,1921 **** ! chrI AUGUSTUS CDS 308978 309210 0.92 + 0 transcript_id "g45.t1"; gene_id "g45"; ! chrI AUGUSTUS CDS 309518 309677 0.91 + 1 transcript_id "g45.t1"; gene_id "g45"; --- 1920,1921 ---- ! chrI AUGUSTUS CDS 308978 309210 0.91 + 0 transcript_id "g45.t1"; gene_id "g45"; ! chrI AUGUSTUS CDS 309518 309677 0.92 + 1 transcript_id "g45.t1"; gene_id "g45"; *************** *** 1925 **** ! chrI AUGUSTUS CDS 311843 312046 0.99 + 0 transcript_id "g45.t1"; gene_id "g45"; --- 1925 ---- ! chrI AUGUSTUS CDS 311843 312046 0.96 + 0 transcript_id "g45.t1"; gene_id "g45"; *************** *** 1927 **** ! chrI AUGUSTUS 3'-UTR 312047 312101 0.34 + . transcript_id "g45.t1"; gene_id "g45"; --- 1927 ---- ! chrI AUGUSTUS 3'-UTR 312047 312101 0.19 + . transcript_id "g45.t1"; gene_id "g45"; *************** *** 1946,1947 **** ! chrI AUGUSTUS gene 312457 312986 0.26 + . g46 ! chrI AUGUSTUS transcript 312457 312986 0.26 + . g46.t1 --- 1946,1947 ---- ! chrI AUGUSTUS gene 312457 312986 0.29 + . g46 ! chrI AUGUSTUS transcript 312457 312986 0.29 + . g46.t1 *************** *** 1951 **** ! chrI AUGUSTUS initial 312511 312699 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; --- 1951 ---- ! chrI AUGUSTUS initial 312511 312699 0.96 + 0 transcript_id "g46.t1"; gene_id "g46"; *************** *** 1953,1954 **** ! chrI AUGUSTUS intron 312700 312750 0.99 + . transcript_id "g46.t1"; gene_id "g46"; ! chrI AUGUSTUS CDS 312511 312699 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; --- 1953,1954 ---- ! chrI AUGUSTUS intron 312700 312750 1 + . transcript_id "g46.t1"; gene_id "g46"; ! chrI AUGUSTUS CDS 312511 312699 0.96 + 0 transcript_id "g46.t1"; gene_id "g46"; *************** *** 1957 **** ! chrI AUGUSTUS 3'-UTR 312898 312986 0.77 + . transcript_id "g46.t1"; gene_id "g46"; --- 1957 ---- ! chrI AUGUSTUS 3'-UTR 312898 312986 0.84 + . transcript_id "g46.t1"; gene_id "g46"; *************** *** 1972,1973 **** ! chrI AUGUSTUS gene 313207 315994 0.09 + . g47 ! chrI AUGUSTUS transcript 313207 315994 0.09 + . g47.t1 --- 1972,1973 ---- ! chrI AUGUSTUS gene 313207 315994 0.15 + . g47 ! chrI AUGUSTUS transcript 313207 315994 0.15 + . g47.t1 *************** *** 1975 **** ! chrI AUGUSTUS 5'-UTR 313207 313311 0.17 + . transcript_id "g47.t1"; gene_id "g47"; --- 1975 ---- ! chrI AUGUSTUS 5'-UTR 313207 313311 0.27 + . transcript_id "g47.t1"; gene_id "g47"; *************** *** 1977,1978 **** ! chrI AUGUSTUS initial 313312 313321 0.99 + 0 transcript_id "g47.t1"; gene_id "g47"; ! chrI AUGUSTUS internal 313376 313464 0.97 + 2 transcript_id "g47.t1"; gene_id "g47"; --- 1977,1978 ---- ! chrI AUGUSTUS initial 313312 313321 1 + 0 transcript_id "g47.t1"; gene_id "g47"; ! chrI AUGUSTUS internal 313376 313464 1 + 2 transcript_id "g47.t1"; gene_id "g47"; *************** *** 1983 **** ! chrI AUGUSTUS intron 313322 313375 0.97 + . transcript_id "g47.t1"; gene_id "g47"; --- 1983 ---- ! chrI AUGUSTUS intron 313322 313375 1 + . transcript_id "g47.t1"; gene_id "g47"; *************** *** 1986 **** ! chrI AUGUSTUS intron 314163 314996 0.97 + . transcript_id "g47.t1"; gene_id "g47"; --- 1986 ---- ! chrI AUGUSTUS intron 314163 314996 0.98 + . transcript_id "g47.t1"; gene_id "g47"; *************** *** 1988,1989 **** ! chrI AUGUSTUS CDS 313312 313321 0.99 + 0 transcript_id "g47.t1"; gene_id "g47"; ! chrI AUGUSTUS CDS 313376 313464 0.97 + 2 transcript_id "g47.t1"; gene_id "g47"; --- 1988,1989 ---- ! chrI AUGUSTUS CDS 313312 313321 1 + 0 transcript_id "g47.t1"; gene_id "g47"; ! chrI AUGUSTUS CDS 313376 313464 1 + 2 transcript_id "g47.t1"; gene_id "g47"; *************** *** 1995 **** ! chrI AUGUSTUS 3'-UTR 315762 315994 0.6 + . transcript_id "g47.t1"; gene_id "g47"; --- 1995 ---- ! chrI AUGUSTUS 3'-UTR 315762 315994 0.53 + . transcript_id "g47.t1"; gene_id "g47"; *************** *** 2014,2015 **** ! chrI AUGUSTUS gene 316277 318304 0.74 + . g48 ! chrI AUGUSTUS transcript 316277 318304 0.74 + . g48.t1 --- 2014,2015 ---- ! chrI AUGUSTUS gene 316277 318304 0.87 + . g48 ! chrI AUGUSTUS transcript 316277 318304 0.87 + . g48.t1 *************** *** 2017 **** ! chrI AUGUSTUS 5'-UTR 316277 316309 0.81 + . transcript_id "g48.t1"; gene_id "g48"; --- 2017 ---- ! chrI AUGUSTUS 5'-UTR 316277 316309 0.91 + . transcript_id "g48.t1"; gene_id "g48"; *************** *** 2034 **** ! chrI AUGUSTUS 3'-UTR 317943 318304 0.9 + . transcript_id "g48.t1"; gene_id "g48"; --- 2034 ---- ! chrI AUGUSTUS 3'-UTR 317943 318304 0.95 + . transcript_id "g48.t1"; gene_id "g48"; *************** *** 2054,2055 **** ! chrI AUGUSTUS gene 318326 321846 0.68 - . g49 ! chrI AUGUSTUS transcript 318326 321846 0.68 - . g49.t1 --- 2054,2055 ---- ! chrI AUGUSTUS gene 318326 321846 0.56 - . g49 ! chrI AUGUSTUS transcript 318326 321846 0.56 - . g49.t1 *************** *** 2057 **** ! chrI AUGUSTUS 3'-UTR 318326 318427 0.93 - . transcript_id "g49.t1"; gene_id "g49"; --- 2057 ---- ! chrI AUGUSTUS 3'-UTR 318326 318427 0.88 - . transcript_id "g49.t1"; gene_id "g49"; *************** *** 2064 **** ! chrI AUGUSTUS internal 321625 321681 0.99 - 2 transcript_id "g49.t1"; gene_id "g49"; --- 2064 ---- ! chrI AUGUSTUS internal 321625 321681 0.98 - 2 transcript_id "g49.t1"; gene_id "g49"; *************** *** 2070 **** ! chrI AUGUSTUS intron 321555 321624 0.99 - . transcript_id "g49.t1"; gene_id "g49"; --- 2070 ---- ! chrI AUGUSTUS intron 321555 321624 0.98 - . transcript_id "g49.t1"; gene_id "g49"; *************** *** 2077 **** ! chrI AUGUSTUS CDS 321625 321681 0.99 - 2 transcript_id "g49.t1"; gene_id "g49"; --- 2077 ---- ! chrI AUGUSTUS CDS 321625 321681 0.98 - 2 transcript_id "g49.t1"; gene_id "g49"; *************** *** 2080 **** ! chrI AUGUSTUS 5'-UTR 321812 321846 0.74 - . transcript_id "g49.t1"; gene_id "g49"; --- 2080 ---- ! chrI AUGUSTUS 5'-UTR 321812 321846 0.67 - . transcript_id "g49.t1"; gene_id "g49"; *************** *** 2103,2104 **** ! chrI AUGUSTUS gene 322019 322596 0.1 - . g50 ! chrI AUGUSTUS transcript 322019 322596 0.1 - . g50.t1 --- 2103,2104 ---- ! chrI AUGUSTUS gene 322019 322596 0.06 - . g50 ! chrI AUGUSTUS transcript 322019 322596 0.06 - . g50.t1 *************** *** 2106 **** ! chrI AUGUSTUS 3'-UTR 322019 322076 0.39 - . transcript_id "g50.t1"; gene_id "g50"; --- 2106 ---- ! chrI AUGUSTUS 3'-UTR 322019 322076 0.32 - . transcript_id "g50.t1"; gene_id "g50"; *************** *** 2110 **** ! chrI AUGUSTUS initial 322449 322552 0.64 - 0 transcript_id "g50.t1"; gene_id "g50"; --- 2110 ---- ! chrI AUGUSTUS initial 322449 322552 0.61 - 0 transcript_id "g50.t1"; gene_id "g50"; *************** *** 2115 **** ! chrI AUGUSTUS CDS 322449 322552 0.64 - 0 transcript_id "g50.t1"; gene_id "g50"; --- 2115 ---- ! chrI AUGUSTUS CDS 322449 322552 0.61 - 0 transcript_id "g50.t1"; gene_id "g50"; *************** *** 2117 **** ! chrI AUGUSTUS 5'-UTR 322553 322596 0.32 - . transcript_id "g50.t1"; gene_id "g50"; --- 2117 ---- ! chrI AUGUSTUS 5'-UTR 322553 322596 0.22 - . transcript_id "g50.t1"; gene_id "g50"; *************** *** 2133,2134 **** ! chrI AUGUSTUS gene 324048 327306 0.48 - . g51 ! chrI AUGUSTUS transcript 324048 327306 0.48 - . g51.t1 --- 2133,2134 ---- ! chrI AUGUSTUS gene 324048 327306 0.4 - . g51 ! chrI AUGUSTUS transcript 324048 327306 0.4 - . g51.t1 *************** *** 2136 **** ! chrI AUGUSTUS 3'-UTR 324048 324082 0.98 - . transcript_id "g51.t1"; gene_id "g51"; --- 2136 ---- ! chrI AUGUSTUS 3'-UTR 324048 324082 0.96 - . transcript_id "g51.t1"; gene_id "g51"; *************** *** 2138 **** ! chrI AUGUSTUS terminal 324083 324269 0.98 - 1 transcript_id "g51.t1"; gene_id "g51"; --- 2138 ---- ! chrI AUGUSTUS terminal 324083 324269 0.96 - 1 transcript_id "g51.t1"; gene_id "g51"; *************** *** 2140 **** ! chrI AUGUSTUS internal 325336 325804 0.87 - 1 transcript_id "g51.t1"; gene_id "g51"; --- 2140 ---- ! chrI AUGUSTUS internal 325336 325804 0.91 - 1 transcript_id "g51.t1"; gene_id "g51"; *************** *** 2142 **** ! chrI AUGUSTUS internal 326227 326586 0.99 - 0 transcript_id "g51.t1"; gene_id "g51"; --- 2142 ---- ! chrI AUGUSTUS internal 326227 326586 1 - 0 transcript_id "g51.t1"; gene_id "g51"; *************** *** 2146 **** ! chrI AUGUSTUS intron 324464 325335 0.8 - . transcript_id "g51.t1"; gene_id "g51"; --- 2146 ---- ! chrI AUGUSTUS intron 324464 325335 0.87 - . transcript_id "g51.t1"; gene_id "g51"; *************** *** 2149 **** ! chrI AUGUSTUS intron 326587 326851 0.98 - . transcript_id "g51.t1"; gene_id "g51"; --- 2149 ---- ! chrI AUGUSTUS intron 326587 326851 0.99 - . transcript_id "g51.t1"; gene_id "g51"; *************** *** 2151 **** ! chrI AUGUSTUS CDS 324083 324269 0.98 - 1 transcript_id "g51.t1"; gene_id "g51"; --- 2151 ---- ! chrI AUGUSTUS CDS 324083 324269 0.96 - 1 transcript_id "g51.t1"; gene_id "g51"; *************** *** 2153 **** ! chrI AUGUSTUS CDS 325336 325804 0.87 - 1 transcript_id "g51.t1"; gene_id "g51"; --- 2153 ---- ! chrI AUGUSTUS CDS 325336 325804 0.91 - 1 transcript_id "g51.t1"; gene_id "g51"; *************** *** 2155 **** ! chrI AUGUSTUS CDS 326227 326586 0.99 - 0 transcript_id "g51.t1"; gene_id "g51"; --- 2155 ---- ! chrI AUGUSTUS CDS 326227 326586 1 - 0 transcript_id "g51.t1"; gene_id "g51"; *************** *** 2159 **** ! chrI AUGUSTUS 5'-UTR 327254 327306 0.62 - . transcript_id "g51.t1"; gene_id "g51"; --- 2159 ---- ! chrI AUGUSTUS 5'-UTR 327254 327306 0.48 - . transcript_id "g51.t1"; gene_id "g51"; *************** *** 2181,2182 **** ! chrI AUGUSTUS gene 327717 330220 0.27 + . g52 ! chrI AUGUSTUS transcript 327717 330220 0.27 + . g52.t1 --- 2181,2182 ---- ! chrI AUGUSTUS gene 327717 330220 0.28 + . g52 ! chrI AUGUSTUS transcript 327717 330220 0.28 + . g52.t1 *************** *** 2184 **** ! chrI AUGUSTUS 5'-UTR 327717 327890 0.35 + . transcript_id "g52.t1"; gene_id "g52"; --- 2184 ---- ! chrI AUGUSTUS 5'-UTR 327717 327890 0.36 + . transcript_id "g52.t1"; gene_id "g52"; *************** *** 2186,2193 **** ! chrI AUGUSTUS initial 327891 327921 0.47 + 0 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS internal 328935 329053 0.7 + 2 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS terminal 329922 330155 0.9 + 0 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS intron 327922 328934 0.89 + . transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS intron 329054 329921 0.7 + . transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS CDS 327891 327921 0.47 + 0 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS CDS 328935 329053 0.7 + 2 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS CDS 329922 330155 0.9 + 0 transcript_id "g52.t1"; gene_id "g52"; --- 2186,2193 ---- ! chrI AUGUSTUS initial 327891 327921 0.39 + 0 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS internal 328935 329053 0.67 + 2 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS terminal 329922 330155 0.93 + 0 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS intron 327922 328934 0.82 + . transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS intron 329054 329921 0.67 + . transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS CDS 327891 327921 0.39 + 0 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS CDS 328935 329053 0.67 + 2 transcript_id "g52.t1"; gene_id "g52"; ! chrI AUGUSTUS CDS 329922 330155 0.93 + 0 transcript_id "g52.t1"; gene_id "g52"; *************** *** 2195 **** ! chrI AUGUSTUS 3'-UTR 330156 330220 0.93 + . transcript_id "g52.t1"; gene_id "g52"; --- 2195 ---- ! chrI AUGUSTUS 3'-UTR 330156 330220 0.91 + . transcript_id "g52.t1"; gene_id "g52"; *************** *** 2211,2212 **** ! chrI AUGUSTUS gene 330895 332646 0.27 - . g53 ! chrI AUGUSTUS transcript 330895 332646 0.27 - . g53.t1 --- 2211,2212 ---- ! chrI AUGUSTUS gene 330895 332646 0.3 - . g53 ! chrI AUGUSTUS transcript 330895 332646 0.3 - . g53.t1 *************** *** 2214 **** ! chrI AUGUSTUS 3'-UTR 330895 330962 0.69 - . transcript_id "g53.t1"; gene_id "g53"; --- 2214 ---- ! chrI AUGUSTUS 3'-UTR 330895 330962 0.73 - . transcript_id "g53.t1"; gene_id "g53"; *************** *** 2216,2217 **** ! chrI AUGUSTUS terminal 330963 331289 0.97 - 0 transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS internal 331339 331464 1 - 0 transcript_id "g53.t1"; gene_id "g53"; --- 2216,2217 ---- ! chrI AUGUSTUS terminal 330963 331289 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS internal 331339 331464 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; *************** *** 2219,2220 **** ! chrI AUGUSTUS initial 332559 332601 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS intron 331290 331338 0.97 - . transcript_id "g53.t1"; gene_id "g53"; --- 2219,2220 ---- ! chrI AUGUSTUS initial 332559 332601 0.98 - 0 transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS intron 331290 331338 0.98 - . transcript_id "g53.t1"; gene_id "g53"; *************** *** 2222,2224 **** ! chrI AUGUSTUS intron 331698 332558 1 - . transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS CDS 330963 331289 0.97 - 0 transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS CDS 331339 331464 1 - 0 transcript_id "g53.t1"; gene_id "g53"; --- 2222,2224 ---- ! chrI AUGUSTUS intron 331698 332558 0.99 - . transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS CDS 330963 331289 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; ! chrI AUGUSTUS CDS 331339 331464 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; *************** *** 2226 **** ! chrI AUGUSTUS CDS 332559 332601 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; --- 2226 ---- ! chrI AUGUSTUS CDS 332559 332601 0.98 - 0 transcript_id "g53.t1"; gene_id "g53"; *************** *** 2228 **** ! chrI AUGUSTUS 5'-UTR 332602 332646 0.39 - . transcript_id "g53.t1"; gene_id "g53"; --- 2228 ---- ! chrI AUGUSTUS 5'-UTR 332602 332646 0.43 - . transcript_id "g53.t1"; gene_id "g53"; *************** *** 2245,2246 **** ! chrI AUGUSTUS gene 333227 338675 0.11 + . g54 ! chrI AUGUSTUS transcript 333227 338675 0.11 + . g54.t1 --- 2245,2246 ---- ! chrI AUGUSTUS gene 333227 338675 0.12 + . g54 ! chrI AUGUSTUS transcript 333227 338675 0.12 + . g54.t1 *************** *** 2250,2253 **** ! chrI AUGUSTUS initial 333442 333486 0.72 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS internal 333767 333847 0.89 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS internal 333899 333994 0.87 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS internal 334161 334293 0.9 + 0 transcript_id "g54.t1"; gene_id "g54"; --- 2250,2253 ---- ! chrI AUGUSTUS initial 333442 333486 0.76 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS internal 333767 333847 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS internal 333899 333994 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS internal 334161 334293 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; *************** *** 2255 **** ! chrI AUGUSTUS internal 335420 335766 1 + 0 transcript_id "g54.t1"; gene_id "g54"; --- 2255 ---- ! chrI AUGUSTUS internal 335420 335766 0.98 + 0 transcript_id "g54.t1"; gene_id "g54"; *************** *** 2257,2259 **** ! chrI AUGUSTUS terminal 338365 338617 0.72 + 1 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS intron 333487 333766 0.93 + . transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS intron 333848 333898 0.89 + . transcript_id "g54.t1"; gene_id "g54"; --- 2257,2259 ---- ! chrI AUGUSTUS terminal 338365 338617 0.73 + 1 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS intron 333487 333766 0.97 + . transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS intron 333848 333898 0.86 + . transcript_id "g54.t1"; gene_id "g54"; *************** *** 2261 **** ! chrI AUGUSTUS intron 334294 334640 0.9 + . transcript_id "g54.t1"; gene_id "g54"; --- 2261 ---- ! chrI AUGUSTUS intron 334294 334640 0.86 + . transcript_id "g54.t1"; gene_id "g54"; *************** *** 2263 **** ! chrI AUGUSTUS intron 335767 337183 1 + . transcript_id "g54.t1"; gene_id "g54"; --- 2263 ---- ! chrI AUGUSTUS intron 335767 337183 0.98 + . transcript_id "g54.t1"; gene_id "g54"; *************** *** 2265,2268 **** ! chrI AUGUSTUS CDS 333442 333486 0.72 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS CDS 333767 333847 0.89 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS CDS 333899 333994 0.87 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS CDS 334161 334293 0.9 + 0 transcript_id "g54.t1"; gene_id "g54"; --- 2265,2268 ---- ! chrI AUGUSTUS CDS 333442 333486 0.76 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS CDS 333767 333847 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS CDS 333899 333994 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; ! chrI AUGUSTUS CDS 334161 334293 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; *************** *** 2270 **** ! chrI AUGUSTUS CDS 335420 335766 1 + 0 transcript_id "g54.t1"; gene_id "g54"; --- 2270 ---- ! chrI AUGUSTUS CDS 335420 335766 0.98 + 0 transcript_id "g54.t1"; gene_id "g54"; *************** *** 2272 **** ! chrI AUGUSTUS CDS 338365 338617 0.72 + 1 transcript_id "g54.t1"; gene_id "g54"; --- 2272 ---- ! chrI AUGUSTUS CDS 338365 338617 0.73 + 1 transcript_id "g54.t1"; gene_id "g54"; *************** *** 2274 **** ! chrI AUGUSTUS 3'-UTR 338618 338675 0.6 + . transcript_id "g54.t1"; gene_id "g54"; --- 2274 ---- ! chrI AUGUSTUS 3'-UTR 338618 338675 0.69 + . transcript_id "g54.t1"; gene_id "g54"; *************** *** 2294,2295 **** ! chrI AUGUSTUS gene 342357 350529 0.07 + . g55 ! chrI AUGUSTUS transcript 342357 350529 0.07 + . g55.t1 --- 2294,2295 ---- ! chrI AUGUSTUS gene 342357 350529 0.09 + . g55 ! chrI AUGUSTUS transcript 342357 350529 0.09 + . g55.t1 *************** *** 2297 **** ! chrI AUGUSTUS 5'-UTR 342357 342383 0.93 + . transcript_id "g55.t1"; gene_id "g55"; --- 2297 ---- ! chrI AUGUSTUS 5'-UTR 342357 342383 0.92 + . transcript_id "g55.t1"; gene_id "g55"; *************** *** 2299,2304 **** ! chrI AUGUSTUS initial 342384 342408 0.99 + 0 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 342521 342706 0.94 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 345099 345224 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 345269 345385 0.8 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 346369 346470 0.93 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 346765 346892 0.84 + 2 transcript_id "g55.t1"; gene_id "g55"; --- 2299,2304 ---- ! chrI AUGUSTUS initial 342384 342408 1 + 0 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 342521 342706 0.99 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 345099 345224 0.71 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 345269 345385 0.72 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 346369 346470 0.87 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 346765 346892 0.91 + 2 transcript_id "g55.t1"; gene_id "g55"; *************** *** 2306,2317 **** ! chrI AUGUSTUS internal 347792 347946 1 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 347993 348305 0.85 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 349050 349652 0.9 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS terminal 350067 350469 0.99 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 342409 342520 0.95 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 342707 345098 0.67 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 345225 345268 0.82 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 345386 346368 0.8 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 346471 346764 0.46 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 346893 347478 0.88 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 347745 347791 1 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 347947 347992 1 + . transcript_id "g55.t1"; gene_id "g55"; --- 2306,2317 ---- ! chrI AUGUSTUS internal 347792 347946 0.98 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 347993 348305 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS internal 349050 349652 0.95 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS terminal 350067 350469 1 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 342409 342520 0.99 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 342707 345098 0.65 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 345225 345268 0.72 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 345386 346368 0.72 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 346471 346764 0.53 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 346893 347478 0.92 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 347745 347791 0.98 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS intron 347947 347992 0.98 + . transcript_id "g55.t1"; gene_id "g55"; *************** *** 2319,2325 **** ! chrI AUGUSTUS intron 349653 350066 0.99 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 342384 342408 0.99 + 0 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 342521 342706 0.94 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 345099 345224 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 345269 345385 0.8 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 346369 346470 0.93 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 346765 346892 0.84 + 2 transcript_id "g55.t1"; gene_id "g55"; --- 2319,2325 ---- ! chrI AUGUSTUS intron 349653 350066 0.98 + . transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 342384 342408 1 + 0 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 342521 342706 0.99 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 345099 345224 0.71 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 345269 345385 0.72 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 346369 346470 0.87 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 346765 346892 0.91 + 2 transcript_id "g55.t1"; gene_id "g55"; *************** *** 2327,2330 **** ! chrI AUGUSTUS CDS 347792 347946 1 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 347993 348305 0.85 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 349050 349652 0.9 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 350067 350469 0.99 + 1 transcript_id "g55.t1"; gene_id "g55"; --- 2327,2330 ---- ! chrI AUGUSTUS CDS 347792 347946 0.98 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 347993 348305 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 349050 349652 0.95 + 1 transcript_id "g55.t1"; gene_id "g55"; ! chrI AUGUSTUS CDS 350067 350469 1 + 1 transcript_id "g55.t1"; gene_id "g55"; *************** *** 2332 **** ! chrI AUGUSTUS 3'-UTR 350470 350529 0.55 + . transcript_id "g55.t1"; gene_id "g55"; --- 2332 ---- ! chrI AUGUSTUS 3'-UTR 350470 350529 0.61 + . transcript_id "g55.t1"; gene_id "g55"; *************** *** 2355,2356 **** ! chrI AUGUSTUS gene 357621 372979 0.06 + . g56 ! chrI AUGUSTUS transcript 357621 372979 0.06 + . g56.t1 --- 2355,2356 ---- ! chrI AUGUSTUS gene 357621 372979 0.09 + . g56 ! chrI AUGUSTUS transcript 357621 372979 0.09 + . g56.t1 *************** *** 2358 **** ! chrI AUGUSTUS 5'-UTR 357621 357735 0.53 + . transcript_id "g56.t1"; gene_id "g56"; --- 2358 ---- ! chrI AUGUSTUS 5'-UTR 357621 357735 0.56 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 2360,2361 **** ! chrI AUGUSTUS initial 357736 357892 0.28 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 358419 358681 0.89 + 2 transcript_id "g56.t1"; gene_id "g56"; --- 2360,2361 ---- ! chrI AUGUSTUS initial 357736 357892 0.3 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 358419 358681 0.91 + 2 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2365 **** ! chrI AUGUSTUS internal 361567 361790 0.96 + 0 transcript_id "g56.t1"; gene_id "g56"; --- 2365 ---- ! chrI AUGUSTUS internal 361567 361790 0.97 + 0 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2368,2375 **** ! chrI AUGUSTUS internal 364257 364403 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 364455 364561 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 364616 364687 0.69 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 365102 365215 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 368921 369059 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 369105 369263 0.93 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 369383 369473 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 369522 369652 0.98 + 2 transcript_id "g56.t1"; gene_id "g56"; --- 2368,2375 ---- ! chrI AUGUSTUS internal 364257 364403 1 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 364455 364561 1 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 364616 364687 0.65 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 365102 365215 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 368921 369059 1 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 369105 369263 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 369383 369473 1 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS internal 369522 369652 1 + 2 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2378,2381 **** ! chrI AUGUSTUS internal 371248 371418 1 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS terminal 372675 372930 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 357893 358418 0.27 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 358682 358893 0.89 + . transcript_id "g56.t1"; gene_id "g56"; --- 2378,2381 ---- ! chrI AUGUSTUS internal 371248 371418 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS terminal 372675 372930 1 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 357893 358418 0.3 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 358682 358893 0.91 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 2384 **** ! chrI AUGUSTUS intron 360340 361566 0.96 + . transcript_id "g56.t1"; gene_id "g56"; --- 2384 ---- ! chrI AUGUSTUS intron 360340 361566 0.97 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 2386 **** ! chrI AUGUSTUS intron 362991 363509 0.83 + . transcript_id "g56.t1"; gene_id "g56"; --- 2386 ---- ! chrI AUGUSTUS intron 362991 363509 0.79 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 2388,2395 **** ! chrI AUGUSTUS intron 364404 364454 0.99 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 364562 364615 0.7 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 364688 365101 0.67 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 365216 368920 0.97 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369060 369104 0.97 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369264 369382 0.96 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369474 369521 0.98 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369653 369971 0.98 + . transcript_id "g56.t1"; gene_id "g56"; --- 2388,2395 ---- ! chrI AUGUSTUS intron 364404 364454 1 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 364562 364615 0.65 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 364688 365101 0.64 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 365216 368920 0.98 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369060 369104 1 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369264 369382 0.98 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369474 369521 1 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 369653 369971 1 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 2397,2400 **** ! chrI AUGUSTUS intron 371197 371247 1 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 371419 372674 0.98 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 357736 357892 0.28 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 358419 358681 0.89 + 2 transcript_id "g56.t1"; gene_id "g56"; --- 2397,2400 ---- ! chrI AUGUSTUS intron 371197 371247 0.99 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS intron 371419 372674 0.99 + . transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 357736 357892 0.3 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 358419 358681 0.91 + 2 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2404 **** ! chrI AUGUSTUS CDS 361567 361790 0.96 + 0 transcript_id "g56.t1"; gene_id "g56"; --- 2404 ---- ! chrI AUGUSTUS CDS 361567 361790 0.97 + 0 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2407,2414 **** ! chrI AUGUSTUS CDS 364257 364403 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 364455 364561 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 364616 364687 0.69 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 365102 365215 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 368921 369059 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 369105 369263 0.93 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 369383 369473 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 369522 369652 0.98 + 2 transcript_id "g56.t1"; gene_id "g56"; --- 2407,2414 ---- ! chrI AUGUSTUS CDS 364257 364403 1 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 364455 364561 1 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 364616 364687 0.65 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 365102 365215 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 368921 369059 1 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 369105 369263 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 369383 369473 1 + 0 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 369522 369652 1 + 2 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2417,2418 **** ! chrI AUGUSTUS CDS 371248 371418 1 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 372675 372930 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; --- 2417,2418 ---- ! chrI AUGUSTUS CDS 371248 371418 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; ! chrI AUGUSTUS CDS 372675 372930 1 + 1 transcript_id "g56.t1"; gene_id "g56"; *************** *** 2420 **** ! chrI AUGUSTUS 3'-UTR 372931 372979 0.49 + . transcript_id "g56.t1"; gene_id "g56"; --- 2420 ---- ! chrI AUGUSTUS 3'-UTR 372931 372979 0.55 + . transcript_id "g56.t1"; gene_id "g56"; *************** *** 2445,2446 **** ! chrI AUGUSTUS gene 375111 401510 0.16 - . g57 ! chrI AUGUSTUS transcript 375111 401510 0.16 - . g57.t1 --- 2445,2446 ---- ! chrI AUGUSTUS gene 375111 401510 0.11 - . g57 ! chrI AUGUSTUS transcript 375111 401510 0.11 - . g57.t1 *************** *** 2448,2449 **** ! chrI AUGUSTUS 3'-UTR 375111 375481 0.38 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS 3'-UTR 377080 377089 0.52 - . transcript_id "g57.t1"; gene_id "g57"; --- 2448,2449 ---- ! chrI AUGUSTUS 3'-UTR 375111 375481 0.43 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS 3'-UTR 377080 377089 0.51 - . transcript_id "g57.t1"; gene_id "g57"; *************** *** 2451,2456 **** ! chrI AUGUSTUS terminal 377090 377583 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 377691 377777 0.86 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 379390 379508 0.98 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 379560 379706 0.89 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 381014 381854 0.82 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 384597 384992 0.97 - 2 transcript_id "g57.t1"; gene_id "g57"; --- 2451,2456 ---- ! chrI AUGUSTUS terminal 377090 377583 0.95 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 377691 377777 0.76 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 379390 379508 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 379560 379706 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 381014 381854 0.78 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 384597 384992 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; *************** *** 2458,2461 **** ! chrI AUGUSTUS internal 389884 389960 0.9 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 390885 391161 0.91 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 392473 392709 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 396105 396251 1 - 0 transcript_id "g57.t1"; gene_id "g57"; --- 2458,2461 ---- ! chrI AUGUSTUS internal 389884 389960 0.92 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 390885 391161 0.92 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 392473 392709 0.93 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS internal 396105 396251 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; *************** *** 2470,2471 **** ! chrI AUGUSTUS intron 377584 377690 0.87 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 377778 379389 0.88 - . transcript_id "g57.t1"; gene_id "g57"; --- 2470,2471 ---- ! chrI AUGUSTUS intron 377584 377690 0.76 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 377778 379389 0.79 - . transcript_id "g57.t1"; gene_id "g57"; *************** *** 2473,2474 **** ! chrI AUGUSTUS intron 379707 381013 0.83 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 381855 384596 0.91 - . transcript_id "g57.t1"; gene_id "g57"; --- 2473,2474 ---- ! chrI AUGUSTUS intron 379707 381013 0.8 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 381855 384596 0.96 - . transcript_id "g57.t1"; gene_id "g57"; *************** *** 2477,2479 **** ! chrI AUGUSTUS intron 389961 390884 0.9 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 391162 392472 0.96 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 392710 396104 1 - . transcript_id "g57.t1"; gene_id "g57"; --- 2477,2479 ---- ! chrI AUGUSTUS intron 389961 390884 0.92 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 391162 392472 0.93 - . transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS intron 392710 396104 0.96 - . transcript_id "g57.t1"; gene_id "g57"; *************** *** 2488,2493 **** ! chrI AUGUSTUS CDS 377090 377583 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 377691 377777 0.86 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 379390 379508 0.98 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 379560 379706 0.89 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 381014 381854 0.82 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 384597 384992 0.97 - 2 transcript_id "g57.t1"; gene_id "g57"; --- 2488,2493 ---- ! chrI AUGUSTUS CDS 377090 377583 0.95 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 377691 377777 0.76 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 379390 379508 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 379560 379706 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 381014 381854 0.78 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 384597 384992 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; *************** *** 2495,2498 **** ! chrI AUGUSTUS CDS 389884 389960 0.9 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 390885 391161 0.91 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 392473 392709 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 396105 396251 1 - 0 transcript_id "g57.t1"; gene_id "g57"; --- 2495,2498 ---- ! chrI AUGUSTUS CDS 389884 389960 0.92 - 2 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 390885 391161 0.92 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 392473 392709 0.93 - 0 transcript_id "g57.t1"; gene_id "g57"; ! chrI AUGUSTUS CDS 396105 396251 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; *************** *** 2508 **** ! chrI AUGUSTUS 5'-UTR 401490 401510 0.73 - . transcript_id "g57.t1"; gene_id "g57"; --- 2508 ---- ! chrI AUGUSTUS 5'-UTR 401490 401510 0.75 - . transcript_id "g57.t1"; gene_id "g57"; *************** *** 2539,2540 **** ! chrI AUGUSTUS gene 402191 409988 0.16 + . g58 ! chrI AUGUSTUS transcript 402191 409988 0.16 + . g58.t1 --- 2539,2540 ---- ! chrI AUGUSTUS gene 402191 409988 0.2 + . g58 ! chrI AUGUSTUS transcript 402191 409988 0.2 + . g58.t1 *************** *** 2542 **** ! chrI AUGUSTUS 5'-UTR 402191 402235 0.55 + . transcript_id "g58.t1"; gene_id "g58"; --- 2542 ---- ! chrI AUGUSTUS 5'-UTR 402191 402235 0.57 + . transcript_id "g58.t1"; gene_id "g58"; *************** *** 2544 **** ! chrI AUGUSTUS initial 402236 402325 0.96 + 0 transcript_id "g58.t1"; gene_id "g58"; --- 2544 ---- ! chrI AUGUSTUS initial 402236 402325 0.94 + 0 transcript_id "g58.t1"; gene_id "g58"; *************** *** 2546,2547 **** ! chrI AUGUSTUS internal 403346 403439 0.99 + 2 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS internal 404646 404970 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; --- 2546,2547 ---- ! chrI AUGUSTUS internal 403346 403439 1 + 2 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS internal 404646 404970 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; *************** *** 2549,2550 **** ! chrI AUGUSTUS internal 407823 408077 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS internal 408878 409021 0.52 + 1 transcript_id "g58.t1"; gene_id "g58"; --- 2549,2550 ---- ! chrI AUGUSTUS internal 407823 408077 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS internal 408878 409021 0.63 + 1 transcript_id "g58.t1"; gene_id "g58"; *************** *** 2554 **** ! chrI AUGUSTUS intron 403440 404645 0.99 + . transcript_id "g58.t1"; gene_id "g58"; --- 2554 ---- ! chrI AUGUSTUS intron 403440 404645 1 + . transcript_id "g58.t1"; gene_id "g58"; *************** *** 2557,2559 **** ! chrI AUGUSTUS intron 408078 408877 0.52 + . transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS intron 409022 409282 0.61 + . transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS CDS 402236 402325 0.96 + 0 transcript_id "g58.t1"; gene_id "g58"; --- 2557,2559 ---- ! chrI AUGUSTUS intron 408078 408877 0.63 + . transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS intron 409022 409282 0.69 + . transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS CDS 402236 402325 0.94 + 0 transcript_id "g58.t1"; gene_id "g58"; *************** *** 2561,2562 **** ! chrI AUGUSTUS CDS 403346 403439 0.99 + 2 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS CDS 404646 404970 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; --- 2561,2562 ---- ! chrI AUGUSTUS CDS 403346 403439 1 + 2 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS CDS 404646 404970 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; *************** *** 2564,2565 **** ! chrI AUGUSTUS CDS 407823 408077 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS CDS 408878 409021 0.52 + 1 transcript_id "g58.t1"; gene_id "g58"; --- 2564,2565 ---- ! chrI AUGUSTUS CDS 407823 408077 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; ! chrI AUGUSTUS CDS 408878 409021 0.63 + 1 transcript_id "g58.t1"; gene_id "g58"; *************** *** 2568 **** ! chrI AUGUSTUS 3'-UTR 409854 409988 0.58 + . transcript_id "g58.t1"; gene_id "g58"; --- 2568 ---- ! chrI AUGUSTUS 3'-UTR 409854 409988 0.54 + . transcript_id "g58.t1"; gene_id "g58"; *************** *** 2594 **** ! chrI AUGUSTUS 5'-UTR 415091 415133 0.66 + . transcript_id "g59.t1"; gene_id "g59"; --- 2594 ---- ! chrI AUGUSTUS 5'-UTR 415091 415133 0.7 + . transcript_id "g59.t1"; gene_id "g59"; *************** *** 2596,2598 **** ! chrI AUGUSTUS initial 415134 415280 0.9 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS internal 415843 415950 0.76 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS internal 417183 417575 0.85 + 0 transcript_id "g59.t1"; gene_id "g59"; --- 2596,2598 ---- ! chrI AUGUSTUS initial 415134 415280 0.86 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS internal 415843 415950 0.83 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS internal 417183 417575 0.8 + 0 transcript_id "g59.t1"; gene_id "g59"; *************** *** 2600,2605 **** ! chrI AUGUSTUS intron 415281 415842 0.84 + . transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS intron 415951 417182 0.76 + . transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS intron 417576 418371 0.85 + . transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS CDS 415134 415280 0.9 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS CDS 415843 415950 0.76 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS CDS 417183 417575 0.85 + 0 transcript_id "g59.t1"; gene_id "g59"; --- 2600,2605 ---- ! chrI AUGUSTUS intron 415281 415842 0.88 + . transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS intron 415951 417182 0.82 + . transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS intron 417576 418371 0.87 + . transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS CDS 415134 415280 0.86 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS CDS 415843 415950 0.83 + 0 transcript_id "g59.t1"; gene_id "g59"; ! chrI AUGUSTUS CDS 417183 417575 0.8 + 0 transcript_id "g59.t1"; gene_id "g59"; *************** *** 2608 **** ! chrI AUGUSTUS 3'-UTR 418459 418516 0.78 + . transcript_id "g59.t1"; gene_id "g59"; --- 2608 ---- ! chrI AUGUSTUS 3'-UTR 418459 418516 0.76 + . transcript_id "g59.t1"; gene_id "g59"; *************** *** 2626,2627 **** ! chrI AUGUSTUS gene 418562 420380 0.21 - . g60 ! chrI AUGUSTUS transcript 418562 420380 0.21 - . g60.t1 --- 2626,2627 ---- ! chrI AUGUSTUS gene 418562 420380 0.29 - . g60 ! chrI AUGUSTUS transcript 418562 420380 0.29 - . g60.t1 *************** *** 2629 **** ! chrI AUGUSTUS 3'-UTR 418562 418597 0.49 - . transcript_id "g60.t1"; gene_id "g60"; --- 2629 ---- ! chrI AUGUSTUS 3'-UTR 418562 418597 0.59 - . transcript_id "g60.t1"; gene_id "g60"; *************** *** 2640 **** ! chrI AUGUSTUS 5'-UTR 420348 420380 0.37 - . transcript_id "g60.t1"; gene_id "g60"; --- 2640 ---- ! chrI AUGUSTUS 5'-UTR 420348 420380 0.45 - . transcript_id "g60.t1"; gene_id "g60"; *************** *** 2658,2659 **** ! chrI AUGUSTUS gene 420563 421740 0.43 - . g61 ! chrI AUGUSTUS transcript 420563 421740 0.43 - . g61.t1 --- 2658,2659 ---- ! chrI AUGUSTUS gene 420563 421740 0.41 - . g61 ! chrI AUGUSTUS transcript 420563 421740 0.41 - . g61.t1 *************** *** 2661 **** ! chrI AUGUSTUS 3'-UTR 420563 420962 0.77 - . transcript_id "g61.t1"; gene_id "g61"; --- 2661 ---- ! chrI AUGUSTUS 3'-UTR 420563 420962 0.74 - . transcript_id "g61.t1"; gene_id "g61"; *************** *** 2665 **** ! chrI AUGUSTUS initial 421665 421698 0.85 - 0 transcript_id "g61.t1"; gene_id "g61"; --- 2665 ---- ! chrI AUGUSTUS initial 421665 421698 0.91 - 0 transcript_id "g61.t1"; gene_id "g61"; *************** *** 2667 **** ! chrI AUGUSTUS intron 421607 421664 0.96 - . transcript_id "g61.t1"; gene_id "g61"; --- 2667 ---- ! chrI AUGUSTUS intron 421607 421664 1 - . transcript_id "g61.t1"; gene_id "g61"; *************** *** 2670 **** ! chrI AUGUSTUS CDS 421665 421698 0.85 - 0 transcript_id "g61.t1"; gene_id "g61"; --- 2670 ---- ! chrI AUGUSTUS CDS 421665 421698 0.91 - 0 transcript_id "g61.t1"; gene_id "g61"; *************** *** 2672 **** ! chrI AUGUSTUS 5'-UTR 421699 421740 0.57 - . transcript_id "g61.t1"; gene_id "g61"; --- 2672 ---- ! chrI AUGUSTUS 5'-UTR 421699 421740 0.54 - . transcript_id "g61.t1"; gene_id "g61"; *************** *** 2689,2690 **** ! chrI AUGUSTUS gene 422336 425140 0.51 - . g62 ! chrI AUGUSTUS transcript 422336 425140 0.51 - . g62.t1 --- 2689,2690 ---- ! chrI AUGUSTUS gene 422336 425140 0.49 - . g62 ! chrI AUGUSTUS transcript 422336 425140 0.49 - . g62.t1 *************** *** 2692 **** ! chrI AUGUSTUS 3'-UTR 422336 422405 0.82 - . transcript_id "g62.t1"; gene_id "g62"; --- 2692 ---- ! chrI AUGUSTUS 3'-UTR 422336 422405 0.79 - . transcript_id "g62.t1"; gene_id "g62"; *************** *** 2699 **** ! chrI AUGUSTUS initial 425009 425074 0.98 - 0 transcript_id "g62.t1"; gene_id "g62"; --- 2699 ---- ! chrI AUGUSTUS initial 425009 425074 0.97 - 0 transcript_id "g62.t1"; gene_id "g62"; *************** *** 2710 **** ! chrI AUGUSTUS CDS 425009 425074 0.98 - 0 transcript_id "g62.t1"; gene_id "g62"; --- 2710 ---- ! chrI AUGUSTUS CDS 425009 425074 0.97 - 0 transcript_id "g62.t1"; gene_id "g62"; *************** *** 2712 **** ! chrI AUGUSTUS 5'-UTR 425075 425140 0.59 - . transcript_id "g62.t1"; gene_id "g62"; --- 2712 ---- ! chrI AUGUSTUS 5'-UTR 425075 425140 0.63 - . transcript_id "g62.t1"; gene_id "g62"; *************** *** 2731,2732 **** ! chrI AUGUSTUS gene 428991 429566 0.24 + . g63 ! chrI AUGUSTUS transcript 428991 429566 0.24 + . g63.t1 --- 2731,2732 ---- ! chrI AUGUSTUS gene 428991 429566 0.19 + . g63 ! chrI AUGUSTUS transcript 428991 429566 0.19 + . g63.t1 *************** *** 2734 **** ! chrI AUGUSTUS 5'-UTR 428991 429015 0.3 + . transcript_id "g63.t1"; gene_id "g63"; --- 2734 ---- ! chrI AUGUSTUS 5'-UTR 428991 429015 0.23 + . transcript_id "g63.t1"; gene_id "g63"; *************** *** 2736,2737 **** ! chrI AUGUSTUS single 429016 429285 0.39 + 0 transcript_id "g63.t1"; gene_id "g63"; ! chrI AUGUSTUS CDS 429016 429285 0.39 + 0 transcript_id "g63.t1"; gene_id "g63"; --- 2736,2737 ---- ! chrI AUGUSTUS single 429016 429285 0.29 + 0 transcript_id "g63.t1"; gene_id "g63"; ! chrI AUGUSTUS CDS 429016 429285 0.29 + 0 transcript_id "g63.t1"; gene_id "g63"; *************** *** 2739 **** ! chrI AUGUSTUS 3'-UTR 429286 429566 0.62 + . transcript_id "g63.t1"; gene_id "g63"; --- 2739 ---- ! chrI AUGUSTUS 3'-UTR 429286 429566 0.54 + . transcript_id "g63.t1"; gene_id "g63"; *************** *** 2754,2755 **** ! chrI AUGUSTUS gene 429675 433660 0.14 - . g64 ! chrI AUGUSTUS transcript 429675 433660 0.14 - . g64.t1 --- 2754,2755 ---- ! chrI AUGUSTUS gene 429675 433660 0.12 - . g64 ! chrI AUGUSTUS transcript 429675 433660 0.12 - . g64.t1 *************** *** 2760 **** ! chrI AUGUSTUS internal 429952 430137 0.93 - 0 transcript_id "g64.t1"; gene_id "g64"; --- 2760 ---- ! chrI AUGUSTUS internal 429952 430137 0.97 - 0 transcript_id "g64.t1"; gene_id "g64"; *************** *** 2762,2763 **** ! chrI AUGUSTUS internal 431798 432102 0.36 - 1 transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS internal 432715 432898 0.37 - 2 transcript_id "g64.t1"; gene_id "g64"; --- 2762,2763 ---- ! chrI AUGUSTUS internal 431798 432102 0.5 - 1 transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS internal 432715 432898 0.5 - 2 transcript_id "g64.t1"; gene_id "g64"; *************** *** 2767,2769 **** ! chrI AUGUSTUS initial 433532 433610 0.99 - 0 transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS intron 429824 429951 0.95 - . transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS intron 430138 431415 0.82 - . transcript_id "g64.t1"; gene_id "g64"; --- 2767,2769 ---- ! chrI AUGUSTUS initial 433532 433610 1 - 0 transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS intron 429824 429951 0.97 - . transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS intron 430138 431415 0.84 - . transcript_id "g64.t1"; gene_id "g64"; *************** *** 2771 **** ! chrI AUGUSTUS intron 432103 432714 0.37 - . transcript_id "g64.t1"; gene_id "g64"; --- 2771 ---- ! chrI AUGUSTUS intron 432103 432714 0.5 - . transcript_id "g64.t1"; gene_id "g64"; *************** *** 2777 **** ! chrI AUGUSTUS CDS 429952 430137 0.93 - 0 transcript_id "g64.t1"; gene_id "g64"; --- 2777 ---- ! chrI AUGUSTUS CDS 429952 430137 0.97 - 0 transcript_id "g64.t1"; gene_id "g64"; *************** *** 2779,2780 **** ! chrI AUGUSTUS CDS 431798 432102 0.36 - 1 transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS CDS 432715 432898 0.37 - 2 transcript_id "g64.t1"; gene_id "g64"; --- 2779,2780 ---- ! chrI AUGUSTUS CDS 431798 432102 0.5 - 1 transcript_id "g64.t1"; gene_id "g64"; ! chrI AUGUSTUS CDS 432715 432898 0.5 - 2 transcript_id "g64.t1"; gene_id "g64"; *************** *** 2784 **** ! chrI AUGUSTUS CDS 433532 433610 0.99 - 0 transcript_id "g64.t1"; gene_id "g64"; --- 2784 ---- ! chrI AUGUSTUS CDS 433532 433610 1 - 0 transcript_id "g64.t1"; gene_id "g64"; *************** *** 2786 **** ! chrI AUGUSTUS 5'-UTR 433611 433660 0.46 - . transcript_id "g64.t1"; gene_id "g64"; --- 2786 ---- ! chrI AUGUSTUS 5'-UTR 433611 433660 0.41 - . transcript_id "g64.t1"; gene_id "g64"; *************** *** 2806,2807 **** ! chrI AUGUSTUS gene 433901 435695 0.26 + . g65 ! chrI AUGUSTUS transcript 433901 435695 0.26 + . g65.t1 --- 2806,2807 ---- ! chrI AUGUSTUS gene 433901 435695 0.28 + . g65 ! chrI AUGUSTUS transcript 433901 435695 0.28 + . g65.t1 *************** *** 2809 **** ! chrI AUGUSTUS 5'-UTR 433901 434011 0.39 + . transcript_id "g65.t1"; gene_id "g65"; --- 2809 ---- ! chrI AUGUSTUS 5'-UTR 433901 434011 0.42 + . transcript_id "g65.t1"; gene_id "g65"; *************** *** 2811 **** ! chrI AUGUSTUS initial 434012 434223 0.96 + 0 transcript_id "g65.t1"; gene_id "g65"; --- 2811 ---- ! chrI AUGUSTUS initial 434012 434223 0.93 + 0 transcript_id "g65.t1"; gene_id "g65"; *************** *** 2816 **** ! chrI AUGUSTUS intron 434224 434280 0.96 + . transcript_id "g65.t1"; gene_id "g65"; --- 2816 ---- ! chrI AUGUSTUS intron 434224 434280 0.94 + . transcript_id "g65.t1"; gene_id "g65"; *************** *** 2820 **** ! chrI AUGUSTUS CDS 434012 434223 0.96 + 0 transcript_id "g65.t1"; gene_id "g65"; --- 2820 ---- ! chrI AUGUSTUS CDS 434012 434223 0.93 + 0 transcript_id "g65.t1"; gene_id "g65"; *************** *** 2826 **** ! chrI AUGUSTUS 3'-UTR 435577 435695 0.64 + . transcript_id "g65.t1"; gene_id "g65"; --- 2826 ---- ! chrI AUGUSTUS 3'-UTR 435577 435695 0.65 + . transcript_id "g65.t1"; gene_id "g65"; *************** *** 2844,2845 **** ! chrI AUGUSTUS gene 439501 439915 0.01 + . g66 ! chrI AUGUSTUS transcript 439501 439915 0.01 + . g66.t1 --- 2844,2845 ---- ! chrI AUGUSTUS gene 439501 439915 0.03 + . g66 ! chrI AUGUSTUS transcript 439501 439915 0.03 + . g66.t1 *************** *** 2847 **** ! chrI AUGUSTUS 5'-UTR 439501 439610 0.16 + . transcript_id "g66.t1"; gene_id "g66"; --- 2847 ---- ! chrI AUGUSTUS 5'-UTR 439501 439610 0.24 + . transcript_id "g66.t1"; gene_id "g66"; *************** *** 2849,2850 **** ! chrI AUGUSTUS single 439611 439874 0.35 + 0 transcript_id "g66.t1"; gene_id "g66"; ! chrI AUGUSTUS CDS 439611 439874 0.35 + 0 transcript_id "g66.t1"; gene_id "g66"; --- 2849,2850 ---- ! chrI AUGUSTUS single 439611 439874 0.47 + 0 transcript_id "g66.t1"; gene_id "g66"; ! chrI AUGUSTUS CDS 439611 439874 0.47 + 0 transcript_id "g66.t1"; gene_id "g66"; *************** *** 2852 **** ! chrI AUGUSTUS 3'-UTR 439875 439915 0.14 + . transcript_id "g66.t1"; gene_id "g66"; --- 2852 ---- ! chrI AUGUSTUS 3'-UTR 439875 439915 0.13 + . transcript_id "g66.t1"; gene_id "g66"; *************** *** 2867,2868 **** ! chrI AUGUSTUS gene 442231 445001 0.1 + . g67 ! chrI AUGUSTUS transcript 442231 445001 0.1 + . g67.t1 --- 2867,2868 ---- ! chrI AUGUSTUS gene 442231 445001 0.06 + . g67 ! chrI AUGUSTUS transcript 442231 445001 0.06 + . g67.t1 *************** *** 2870 **** ! chrI AUGUSTUS 5'-UTR 442231 442271 0.44 + . transcript_id "g67.t1"; gene_id "g67"; --- 2870 ---- ! chrI AUGUSTUS 5'-UTR 442231 442271 0.43 + . transcript_id "g67.t1"; gene_id "g67"; *************** *** 2872,2879 **** ! chrI AUGUSTUS initial 442272 442361 0.83 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS internal 442668 442932 0.77 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS terminal 444733 444782 0.55 + 2 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS intron 442362 442667 0.97 + . transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS intron 442933 444732 0.55 + . transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS CDS 442272 442361 0.83 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS CDS 442668 442932 0.77 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS CDS 444733 444782 0.55 + 2 transcript_id "g67.t1"; gene_id "g67"; --- 2872,2879 ---- ! chrI AUGUSTUS initial 442272 442361 0.9 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS internal 442668 442932 0.75 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS terminal 444733 444782 0.5 + 2 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS intron 442362 442667 0.96 + . transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS intron 442933 444732 0.5 + . transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS CDS 442272 442361 0.9 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS CDS 442668 442932 0.75 + 0 transcript_id "g67.t1"; gene_id "g67"; ! chrI AUGUSTUS CDS 444733 444782 0.5 + 2 transcript_id "g67.t1"; gene_id "g67"; *************** *** 2881 **** ! chrI AUGUSTUS 3'-UTR 444783 445001 0.26 + . transcript_id "g67.t1"; gene_id "g67"; --- 2881 ---- ! chrI AUGUSTUS 3'-UTR 444783 445001 0.18 + . transcript_id "g67.t1"; gene_id "g67"; *************** *** 2897,2898 **** ! chrI AUGUSTUS gene 447151 448414 0.16 + . g68 ! chrI AUGUSTUS transcript 447151 448414 0.16 + . g68.t1 --- 2897,2898 ---- ! chrI AUGUSTUS gene 447151 448414 0.29 + . g68 ! chrI AUGUSTUS transcript 447151 448414 0.29 + . g68.t1 *************** *** 2900 **** ! chrI AUGUSTUS 5'-UTR 447151 447315 0.24 + . transcript_id "g68.t1"; gene_id "g68"; --- 2900 ---- ! chrI AUGUSTUS 5'-UTR 447151 447315 0.34 + . transcript_id "g68.t1"; gene_id "g68"; *************** *** 2902,2904 **** ! chrI AUGUSTUS initial 447316 447480 0.7 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS internal 447586 447693 0.62 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS internal 447837 447998 0.94 + 0 transcript_id "g68.t1"; gene_id "g68"; --- 2902,2904 ---- ! chrI AUGUSTUS initial 447316 447480 0.73 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS internal 447586 447693 0.66 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS internal 447837 447998 0.96 + 0 transcript_id "g68.t1"; gene_id "g68"; *************** *** 2906,2907 **** ! chrI AUGUSTUS intron 447481 447585 0.9 + . transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS intron 447694 447836 0.65 + . transcript_id "g68.t1"; gene_id "g68"; --- 2906,2907 ---- ! chrI AUGUSTUS intron 447481 447585 0.89 + . transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS intron 447694 447836 0.69 + . transcript_id "g68.t1"; gene_id "g68"; *************** *** 2909,2911 **** ! chrI AUGUSTUS CDS 447316 447480 0.7 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS CDS 447586 447693 0.62 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS CDS 447837 447998 0.94 + 0 transcript_id "g68.t1"; gene_id "g68"; --- 2909,2911 ---- ! chrI AUGUSTUS CDS 447316 447480 0.73 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS CDS 447586 447693 0.66 + 0 transcript_id "g68.t1"; gene_id "g68"; ! chrI AUGUSTUS CDS 447837 447998 0.96 + 0 transcript_id "g68.t1"; gene_id "g68"; *************** *** 2914 **** ! chrI AUGUSTUS 3'-UTR 448369 448414 0.98 + . transcript_id "g68.t1"; gene_id "g68"; --- 2914 ---- ! chrI AUGUSTUS 3'-UTR 448369 448414 0.97 + . transcript_id "g68.t1"; gene_id "g68"; *************** *** 2933 **** ! chrI AUGUSTUS 3'-UTR 449300 449414 0.61 - . transcript_id "g69.t1"; gene_id "g69"; --- 2933 ---- ! chrI AUGUSTUS 3'-UTR 449300 449414 0.56 - . transcript_id "g69.t1"; gene_id "g69"; *************** *** 2938,2940 **** ! chrI AUGUSTUS internal 449930 450041 1 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS internal 450140 450355 0.4 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS internal 450475 450575 0.35 - 2 transcript_id "g69.t1"; gene_id "g69"; --- 2938,2940 ---- ! chrI AUGUSTUS internal 449930 450041 0.99 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS internal 450140 450355 0.5 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS internal 450475 450575 0.47 - 2 transcript_id "g69.t1"; gene_id "g69"; *************** *** 2942 **** ! chrI AUGUSTUS initial 451285 451367 0.52 - 0 transcript_id "g69.t1"; gene_id "g69"; --- 2942 ---- ! chrI AUGUSTUS initial 451285 451367 0.58 - 0 transcript_id "g69.t1"; gene_id "g69"; *************** *** 2947,2949 **** ! chrI AUGUSTUS intron 450356 450474 0.21 - . transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS intron 450576 450619 0.79 - . transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS intron 451123 451284 0.42 - . transcript_id "g69.t1"; gene_id "g69"; --- 2947,2949 ---- ! chrI AUGUSTUS intron 450356 450474 0.25 - . transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS intron 450576 450619 0.87 - . transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS intron 451123 451284 0.49 - . transcript_id "g69.t1"; gene_id "g69"; *************** *** 2953,2955 **** ! chrI AUGUSTUS CDS 449930 450041 1 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS CDS 450140 450355 0.4 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS CDS 450475 450575 0.35 - 2 transcript_id "g69.t1"; gene_id "g69"; --- 2953,2955 ---- ! chrI AUGUSTUS CDS 449930 450041 0.99 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS CDS 450140 450355 0.5 - 0 transcript_id "g69.t1"; gene_id "g69"; ! chrI AUGUSTUS CDS 450475 450575 0.47 - 2 transcript_id "g69.t1"; gene_id "g69"; *************** *** 2957 **** ! chrI AUGUSTUS CDS 451285 451367 0.52 - 0 transcript_id "g69.t1"; gene_id "g69"; --- 2957 ---- ! chrI AUGUSTUS CDS 451285 451367 0.58 - 0 transcript_id "g69.t1"; gene_id "g69"; *************** *** 2959 **** ! chrI AUGUSTUS 5'-UTR 451368 451650 0.18 - . transcript_id "g69.t1"; gene_id "g69"; --- 2959 ---- ! chrI AUGUSTUS 5'-UTR 451368 451650 0.22 - . transcript_id "g69.t1"; gene_id "g69"; *************** *** 2981 **** ! chrI AUGUSTUS 3'-UTR 451898 451974 0.53 - . transcript_id "g70.t1"; gene_id "g70"; --- 2981 ---- ! chrI AUGUSTUS 3'-UTR 451898 451974 0.49 - . transcript_id "g70.t1"; gene_id "g70"; *************** *** 2985 **** ! chrI AUGUSTUS internal 454659 454895 0.93 - 0 transcript_id "g70.t1"; gene_id "g70"; --- 2985 ---- ! chrI AUGUSTUS internal 454659 454895 0.92 - 0 transcript_id "g70.t1"; gene_id "g70"; *************** *** 2987 **** ! chrI AUGUSTUS initial 456055 456445 0.56 - 0 transcript_id "g70.t1"; gene_id "g70"; --- 2987 ---- ! chrI AUGUSTUS initial 456055 456445 0.48 - 0 transcript_id "g70.t1"; gene_id "g70"; *************** *** 2989,2991 **** ! chrI AUGUSTUS intron 453354 454658 0.93 - . transcript_id "g70.t1"; gene_id "g70"; ! chrI AUGUSTUS intron 454896 455019 0.93 - . transcript_id "g70.t1"; gene_id "g70"; ! chrI AUGUSTUS intron 455094 456054 1 - . transcript_id "g70.t1"; gene_id "g70"; --- 2989,2991 ---- ! chrI AUGUSTUS intron 453354 454658 0.92 - . transcript_id "g70.t1"; gene_id "g70"; ! chrI AUGUSTUS intron 454896 455019 0.92 - . transcript_id "g70.t1"; gene_id "g70"; ! chrI AUGUSTUS intron 455094 456054 0.99 - . transcript_id "g70.t1"; gene_id "g70"; *************** *** 2994 **** ! chrI AUGUSTUS CDS 454659 454895 0.93 - 0 transcript_id "g70.t1"; gene_id "g70"; --- 2994 ---- ! chrI AUGUSTUS CDS 454659 454895 0.92 - 0 transcript_id "g70.t1"; gene_id "g70"; *************** *** 2996 **** ! chrI AUGUSTUS CDS 456055 456445 0.56 - 0 transcript_id "g70.t1"; gene_id "g70"; --- 2996 ---- ! chrI AUGUSTUS CDS 456055 456445 0.48 - 0 transcript_id "g70.t1"; gene_id "g70"; *************** *** 2998 **** ! chrI AUGUSTUS 5'-UTR 456446 456570 0.2 - . transcript_id "g70.t1"; gene_id "g70"; --- 2998 ---- ! chrI AUGUSTUS 5'-UTR 456446 456570 0.23 - . transcript_id "g70.t1"; gene_id "g70"; *************** *** 3017,3018 **** ! chrI AUGUSTUS gene 468788 482350 0.32 - . g71 ! chrI AUGUSTUS transcript 468788 482350 0.32 - . g71.t1 --- 3017,3018 ---- ! chrI AUGUSTUS gene 468788 482350 0.38 - . g71 ! chrI AUGUSTUS transcript 468788 482350 0.38 - . g71.t1 *************** *** 3020 **** ! chrI AUGUSTUS 3'-UTR 468788 468965 0.86 - . transcript_id "g71.t1"; gene_id "g71"; --- 3020 ---- ! chrI AUGUSTUS 3'-UTR 468788 468965 0.9 - . transcript_id "g71.t1"; gene_id "g71"; *************** *** 3024,3025 **** ! chrI AUGUSTUS internal 472450 472505 0.63 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS internal 473312 473662 0.99 - 0 transcript_id "g71.t1"; gene_id "g71"; --- 3024,3025 ---- ! chrI AUGUSTUS internal 472450 472505 0.56 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS internal 473312 473662 1 - 0 transcript_id "g71.t1"; gene_id "g71"; *************** *** 3027,3029 **** ! chrI AUGUSTUS internal 478229 478801 0.99 - 2 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS internal 480305 480569 0.98 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS initial 482218 482274 0.91 - 0 transcript_id "g71.t1"; gene_id "g71"; --- 3027,3029 ---- ! chrI AUGUSTUS internal 478229 478801 0.96 - 2 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS internal 480305 480569 1 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS initial 482218 482274 0.95 - 0 transcript_id "g71.t1"; gene_id "g71"; *************** *** 3031,3032 **** ! chrI AUGUSTUS intron 471064 472449 0.47 - . transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS intron 472506 473311 0.77 - . transcript_id "g71.t1"; gene_id "g71"; --- 3031,3032 ---- ! chrI AUGUSTUS intron 471064 472449 0.5 - . transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS intron 472506 473311 0.73 - . transcript_id "g71.t1"; gene_id "g71"; *************** *** 3035,3036 **** ! chrI AUGUSTUS intron 478802 480304 0.99 - . transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS intron 480570 482217 0.98 - . transcript_id "g71.t1"; gene_id "g71"; --- 3035,3036 ---- ! chrI AUGUSTUS intron 478802 480304 0.96 - . transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS intron 480570 482217 1 - . transcript_id "g71.t1"; gene_id "g71"; *************** *** 3039,3040 **** ! chrI AUGUSTUS CDS 472450 472505 0.63 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS CDS 473312 473662 0.99 - 0 transcript_id "g71.t1"; gene_id "g71"; --- 3039,3040 ---- ! chrI AUGUSTUS CDS 472450 472505 0.56 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS CDS 473312 473662 1 - 0 transcript_id "g71.t1"; gene_id "g71"; *************** *** 3042,3044 **** ! chrI AUGUSTUS CDS 478229 478801 0.99 - 2 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS CDS 480305 480569 0.98 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS CDS 482218 482274 0.91 - 0 transcript_id "g71.t1"; gene_id "g71"; --- 3042,3044 ---- ! chrI AUGUSTUS CDS 478229 478801 0.96 - 2 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS CDS 480305 480569 1 - 0 transcript_id "g71.t1"; gene_id "g71"; ! chrI AUGUSTUS CDS 482218 482274 0.95 - 0 transcript_id "g71.t1"; gene_id "g71"; *************** *** 3046 **** ! chrI AUGUSTUS 5'-UTR 482275 482350 0.74 - . transcript_id "g71.t1"; gene_id "g71"; --- 3046 ---- ! chrI AUGUSTUS 5'-UTR 482275 482350 0.82 - . transcript_id "g71.t1"; gene_id "g71"; *************** *** 3069,3070 **** ! chrI AUGUSTUS gene 483181 483729 0.45 + . g72 ! chrI AUGUSTUS transcript 483181 483729 0.45 + . g72.t1 --- 3069,3070 ---- ! chrI AUGUSTUS gene 483181 483729 0.49 + . g72 ! chrI AUGUSTUS transcript 483181 483729 0.49 + . g72.t1 *************** *** 3072 **** ! chrI AUGUSTUS 5'-UTR 483181 483203 0.46 + . transcript_id "g72.t1"; gene_id "g72"; --- 3072 ---- ! chrI AUGUSTUS 5'-UTR 483181 483203 0.49 + . transcript_id "g72.t1"; gene_id "g72"; *************** *** 3074,3075 **** ! chrI AUGUSTUS single 483204 483653 0.95 + 0 transcript_id "g72.t1"; gene_id "g72"; ! chrI AUGUSTUS CDS 483204 483653 0.95 + 0 transcript_id "g72.t1"; gene_id "g72"; --- 3074,3075 ---- ! chrI AUGUSTUS single 483204 483653 0.93 + 0 transcript_id "g72.t1"; gene_id "g72"; ! chrI AUGUSTUS CDS 483204 483653 0.93 + 0 transcript_id "g72.t1"; gene_id "g72"; *************** *** 3092,3093 **** ! chrI AUGUSTUS gene 485801 497384 0.09 + . g73 ! chrI AUGUSTUS transcript 485801 497384 0.09 + . g73.t1 --- 3092,3093 ---- ! chrI AUGUSTUS gene 485801 497384 0.15 + . g73 ! chrI AUGUSTUS transcript 485801 497384 0.15 + . g73.t1 *************** *** 3095 **** ! chrI AUGUSTUS 5'-UTR 485801 485869 0.93 + . transcript_id "g73.t1"; gene_id "g73"; --- 3095 ---- ! chrI AUGUSTUS 5'-UTR 485801 485869 0.89 + . transcript_id "g73.t1"; gene_id "g73"; *************** *** 3097 **** ! chrI AUGUSTUS initial 485870 486005 1 + 0 transcript_id "g73.t1"; gene_id "g73"; --- 3097 ---- ! chrI AUGUSTUS initial 485870 486005 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; *************** *** 3100,3101 **** ! chrI AUGUSTUS internal 489977 490191 0.16 + 2 transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS internal 490238 490858 0.97 + 0 transcript_id "g73.t1"; gene_id "g73"; --- 3100,3101 ---- ! chrI AUGUSTUS internal 489977 490191 0.21 + 2 transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS internal 490238 490858 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; *************** *** 3103 **** ! chrI AUGUSTUS internal 494937 495299 0.8 + 0 transcript_id "g73.t1"; gene_id "g73"; --- 3103 ---- ! chrI AUGUSTUS internal 494937 495299 0.76 + 0 transcript_id "g73.t1"; gene_id "g73"; *************** *** 3107 **** ! chrI AUGUSTUS intron 488568 489976 0.16 + . transcript_id "g73.t1"; gene_id "g73"; --- 3107 ---- ! chrI AUGUSTUS intron 488568 489976 0.21 + . transcript_id "g73.t1"; gene_id "g73"; *************** *** 3109,3112 **** ! chrI AUGUSTUS intron 490859 492608 0.96 + . transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS intron 492969 494936 0.89 + . transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS intron 495300 496668 0.8 + . transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS CDS 485870 486005 1 + 0 transcript_id "g73.t1"; gene_id "g73"; --- 3109,3112 ---- ! chrI AUGUSTUS intron 490859 492608 0.98 + . transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS intron 492969 494936 0.88 + . transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS intron 495300 496668 0.76 + . transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS CDS 485870 486005 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; *************** *** 3115,3116 **** ! chrI AUGUSTUS CDS 489977 490191 0.16 + 2 transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS CDS 490238 490858 0.97 + 0 transcript_id "g73.t1"; gene_id "g73"; --- 3115,3116 ---- ! chrI AUGUSTUS CDS 489977 490191 0.21 + 2 transcript_id "g73.t1"; gene_id "g73"; ! chrI AUGUSTUS CDS 490238 490858 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; *************** *** 3118 **** ! chrI AUGUSTUS CDS 494937 495299 0.8 + 0 transcript_id "g73.t1"; gene_id "g73"; --- 3118 ---- ! chrI AUGUSTUS CDS 494937 495299 0.76 + 0 transcript_id "g73.t1"; gene_id "g73"; *************** *** 3121 **** ! chrI AUGUSTUS 3'-UTR 497263 497384 0.95 + . transcript_id "g73.t1"; gene_id "g73"; --- 3121 ---- ! chrI AUGUSTUS 3'-UTR 497263 497384 0.98 + . transcript_id "g73.t1"; gene_id "g73"; *************** *** 3146,3147 **** ! chrI AUGUSTUS gene 498101 506255 0.23 + . g74 ! chrI AUGUSTUS transcript 498101 506255 0.23 + . g74.t1 --- 3146,3147 ---- ! chrI AUGUSTUS gene 498101 506255 0.25 + . g74 ! chrI AUGUSTUS transcript 498101 506255 0.25 + . g74.t1 *************** *** 3149 **** ! chrI AUGUSTUS 5'-UTR 498101 498136 0.81 + . transcript_id "g74.t1"; gene_id "g74"; --- 3149 ---- ! chrI AUGUSTUS 5'-UTR 498101 498136 0.83 + . transcript_id "g74.t1"; gene_id "g74"; *************** *** 3151 **** ! chrI AUGUSTUS initial 498137 498428 0.99 + 0 transcript_id "g74.t1"; gene_id "g74"; --- 3151 ---- ! chrI AUGUSTUS initial 498137 498428 1 + 0 transcript_id "g74.t1"; gene_id "g74"; *************** *** 3162 **** ! chrI AUGUSTUS CDS 498137 498428 0.99 + 0 transcript_id "g74.t1"; gene_id "g74"; --- 3162 ---- ! chrI AUGUSTUS CDS 498137 498428 1 + 0 transcript_id "g74.t1"; gene_id "g74"; *************** *** 3169,3170 **** ! chrI AUGUSTUS 3'-UTR 505684 505704 0.91 + . transcript_id "g74.t1"; gene_id "g74"; ! chrI AUGUSTUS 3'-UTR 505961 506255 0.31 + . transcript_id "g74.t1"; gene_id "g74"; --- 3169,3170 ---- ! chrI AUGUSTUS 3'-UTR 505684 505704 0.89 + . transcript_id "g74.t1"; gene_id "g74"; ! chrI AUGUSTUS 3'-UTR 505961 506255 0.3 + . transcript_id "g74.t1"; gene_id "g74"; *************** *** 3190,3191 **** ! chrI AUGUSTUS gene 510942 511710 0.03 - . g75 ! chrI AUGUSTUS transcript 510942 511710 0.03 - . g75.t1 --- 3190,3191 ---- ! chrI AUGUSTUS gene 510942 511710 0.02 - . g75 ! chrI AUGUSTUS transcript 510942 511710 0.02 - . g75.t1 *************** *** 3193 **** ! chrI AUGUSTUS 3'-UTR 510942 510990 0.22 - . transcript_id "g75.t1"; gene_id "g75"; --- 3193 ---- ! chrI AUGUSTUS 3'-UTR 510942 510990 0.2 - . transcript_id "g75.t1"; gene_id "g75"; *************** *** 3195,3199 **** ! chrI AUGUSTUS terminal 510991 511278 0.21 - 0 transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS initial 511559 511684 0.8 - 0 transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS intron 511279 511558 0.84 - . transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS CDS 510991 511278 0.21 - 0 transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS CDS 511559 511684 0.8 - 0 transcript_id "g75.t1"; gene_id "g75"; --- 3195,3199 ---- ! chrI AUGUSTUS terminal 510991 511278 0.22 - 0 transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS initial 511559 511684 0.81 - 0 transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS intron 511279 511558 0.83 - . transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS CDS 510991 511278 0.22 - 0 transcript_id "g75.t1"; gene_id "g75"; ! chrI AUGUSTUS CDS 511559 511684 0.81 - 0 transcript_id "g75.t1"; gene_id "g75"; *************** *** 3201 **** ! chrI AUGUSTUS 5'-UTR 511685 511710 0.3 - . transcript_id "g75.t1"; gene_id "g75"; --- 3201 ---- ! chrI AUGUSTUS 5'-UTR 511685 511710 0.23 - . transcript_id "g75.t1"; gene_id "g75"; *************** *** 3217,3218 **** ! chrI AUGUSTUS gene 537110 542115 0.11 + . g76 ! chrI AUGUSTUS transcript 537110 542115 0.11 + . g76.t1 --- 3217,3218 ---- ! chrI AUGUSTUS gene 537110 542115 0.07 + . g76 ! chrI AUGUSTUS transcript 537110 542115 0.07 + . g76.t1 *************** *** 3220 **** ! chrI AUGUSTUS 5'-UTR 537110 537191 0.22 + . transcript_id "g76.t1"; gene_id "g76"; --- 3220 ---- ! chrI AUGUSTUS 5'-UTR 537110 537191 0.26 + . transcript_id "g76.t1"; gene_id "g76"; *************** *** 3222,3224 **** ! chrI AUGUSTUS initial 537192 537212 0.44 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS internal 537812 538140 0.53 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS internal 538769 539061 0.98 + 1 transcript_id "g76.t1"; gene_id "g76"; --- 3222,3224 ---- ! chrI AUGUSTUS initial 537192 537212 0.42 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS internal 537812 538140 0.5 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS internal 538769 539061 0.97 + 1 transcript_id "g76.t1"; gene_id "g76"; *************** *** 3226 **** ! chrI AUGUSTUS internal 541581 541668 1 + 1 transcript_id "g76.t1"; gene_id "g76"; --- 3226 ---- ! chrI AUGUSTUS internal 541581 541668 0.99 + 1 transcript_id "g76.t1"; gene_id "g76"; *************** *** 3228 **** ! chrI AUGUSTUS intron 537213 537811 0.44 + . transcript_id "g76.t1"; gene_id "g76"; --- 3228 ---- ! chrI AUGUSTUS intron 537213 537811 0.42 + . transcript_id "g76.t1"; gene_id "g76"; *************** *** 3230,3231 **** ! chrI AUGUSTUS intron 539062 540409 0.98 + . transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS intron 540747 541580 1 + . transcript_id "g76.t1"; gene_id "g76"; --- 3230,3231 ---- ! chrI AUGUSTUS intron 539062 540409 0.97 + . transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS intron 540747 541580 0.99 + . transcript_id "g76.t1"; gene_id "g76"; *************** *** 3233,3235 **** ! chrI AUGUSTUS CDS 537192 537212 0.44 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS CDS 537812 538140 0.53 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS CDS 538769 539061 0.98 + 1 transcript_id "g76.t1"; gene_id "g76"; --- 3233,3235 ---- ! chrI AUGUSTUS CDS 537192 537212 0.42 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS CDS 537812 538140 0.5 + 0 transcript_id "g76.t1"; gene_id "g76"; ! chrI AUGUSTUS CDS 538769 539061 0.97 + 1 transcript_id "g76.t1"; gene_id "g76"; *************** *** 3237 **** ! chrI AUGUSTUS CDS 541581 541668 1 + 1 transcript_id "g76.t1"; gene_id "g76"; --- 3237 ---- ! chrI AUGUSTUS CDS 541581 541668 0.99 + 1 transcript_id "g76.t1"; gene_id "g76"; *************** *** 3240 **** ! chrI AUGUSTUS 3'-UTR 541850 542115 0.33 + . transcript_id "g76.t1"; gene_id "g76"; --- 3240 ---- ! chrI AUGUSTUS 3'-UTR 541850 542115 0.27 + . transcript_id "g76.t1"; gene_id "g76"; *************** *** 3259,3260 **** ! chrI AUGUSTUS gene 544710 546186 0.24 + . g77 ! chrI AUGUSTUS transcript 544710 546186 0.24 + . g77.t1 --- 3259,3260 ---- ! chrI AUGUSTUS gene 544710 546186 0.18 + . g77 ! chrI AUGUSTUS transcript 544710 546186 0.18 + . g77.t1 *************** *** 3262 **** ! chrI AUGUSTUS 5'-UTR 544710 544773 0.36 + . transcript_id "g77.t1"; gene_id "g77"; --- 3262 ---- ! chrI AUGUSTUS 5'-UTR 544710 544773 0.25 + . transcript_id "g77.t1"; gene_id "g77"; *************** *** 3270 **** ! chrI AUGUSTUS intron 545865 545941 0.92 + . transcript_id "g77.t1"; gene_id "g77"; --- 3270 ---- ! chrI AUGUSTUS intron 545865 545941 0.9 + . transcript_id "g77.t1"; gene_id "g77"; *************** *** 3276 **** ! chrI AUGUSTUS 3'-UTR 546155 546186 0.86 + . transcript_id "g77.t1"; gene_id "g77"; --- 3276 ---- ! chrI AUGUSTUS 3'-UTR 546155 546186 0.79 + . transcript_id "g77.t1"; gene_id "g77"; *************** *** 3296 **** ! chrI AUGUSTUS 3'-UTR 546861 546966 0.86 - . transcript_id "g78.t1"; gene_id "g78"; --- 3296 ---- ! chrI AUGUSTUS 3'-UTR 546861 546966 0.76 - . transcript_id "g78.t1"; gene_id "g78"; *************** *** 3300 **** ! chrI AUGUSTUS initial 548122 548226 0.35 - 0 transcript_id "g78.t1"; gene_id "g78"; --- 3300 ---- ! chrI AUGUSTUS initial 548122 548226 0.32 - 0 transcript_id "g78.t1"; gene_id "g78"; *************** *** 3302 **** ! chrI AUGUSTUS intron 547334 548121 0.98 - . transcript_id "g78.t1"; gene_id "g78"; --- 3302 ---- ! chrI AUGUSTUS intron 547334 548121 0.99 - . transcript_id "g78.t1"; gene_id "g78"; *************** *** 3305 **** ! chrI AUGUSTUS CDS 548122 548226 0.35 - 0 transcript_id "g78.t1"; gene_id "g78"; --- 3305 ---- ! chrI AUGUSTUS CDS 548122 548226 0.32 - 0 transcript_id "g78.t1"; gene_id "g78"; *************** *** 3323,3324 **** ! chrI AUGUSTUS gene 549240 550622 0.66 + . g79 ! chrI AUGUSTUS transcript 549240 550622 0.66 + . g79.t1 --- 3323,3324 ---- ! chrI AUGUSTUS gene 549240 550622 0.65 + . g79 ! chrI AUGUSTUS transcript 549240 550622 0.65 + . g79.t1 *************** *** 3326 **** ! chrI AUGUSTUS 5'-UTR 549240 549296 0.86 + . transcript_id "g79.t1"; gene_id "g79"; --- 3326 ---- ! chrI AUGUSTUS 5'-UTR 549240 549296 0.85 + . transcript_id "g79.t1"; gene_id "g79"; *************** *** 3328 **** ! chrI AUGUSTUS initial 549297 549339 0.94 + 0 transcript_id "g79.t1"; gene_id "g79"; --- 3328 ---- ! chrI AUGUSTUS initial 549297 549339 0.97 + 0 transcript_id "g79.t1"; gene_id "g79"; *************** *** 3332 **** ! chrI AUGUSTUS intron 549340 549774 0.99 + . transcript_id "g79.t1"; gene_id "g79"; --- 3332 ---- ! chrI AUGUSTUS intron 549340 549774 0.97 + . transcript_id "g79.t1"; gene_id "g79"; *************** *** 3335 **** ! chrI AUGUSTUS CDS 549297 549339 0.94 + 0 transcript_id "g79.t1"; gene_id "g79"; --- 3335 ---- ! chrI AUGUSTUS CDS 549297 549339 0.97 + 0 transcript_id "g79.t1"; gene_id "g79"; *************** *** 3340 **** ! chrI AUGUSTUS 3'-UTR 550545 550622 0.8 + . transcript_id "g79.t1"; gene_id "g79"; --- 3340 ---- ! chrI AUGUSTUS 3'-UTR 550545 550622 0.79 + . transcript_id "g79.t1"; gene_id "g79"; *************** *** 3357,3358 **** ! chrI AUGUSTUS gene 551261 551649 0.37 - . g80 ! chrI AUGUSTUS transcript 551261 551649 0.37 - . g80.t1 --- 3357,3358 ---- ! chrI AUGUSTUS gene 551261 551649 0.35 - . g80 ! chrI AUGUSTUS transcript 551261 551649 0.35 - . g80.t1 *************** *** 3365 **** ! chrI AUGUSTUS 5'-UTR 551592 551649 0.42 - . transcript_id "g80.t1"; gene_id "g80"; --- 3365 ---- ! chrI AUGUSTUS 5'-UTR 551592 551649 0.43 - . transcript_id "g80.t1"; gene_id "g80"; *************** *** 3382 **** ! chrI AUGUSTUS 5'-UTR 553040 553094 0.33 + . transcript_id "g81.t1"; gene_id "g81"; --- 3382 ---- ! chrI AUGUSTUS 5'-UTR 553040 553094 0.42 + . transcript_id "g81.t1"; gene_id "g81"; *************** *** 3384,3385 **** ! chrI AUGUSTUS initial 553095 553436 0.81 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS internal 555148 555212 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; --- 3384,3385 ---- ! chrI AUGUSTUS initial 553095 553436 0.82 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS internal 555148 555212 0.89 + 0 transcript_id "g81.t1"; gene_id "g81"; *************** *** 3387,3389 **** ! chrI AUGUSTUS internal 556441 556531 0.95 + 1 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS internal 556601 556771 0.94 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS internal 556874 557016 0.95 + 0 transcript_id "g81.t1"; gene_id "g81"; --- 3387,3389 ---- ! chrI AUGUSTUS internal 556441 556531 0.96 + 1 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS internal 556601 556771 1 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS internal 556874 557016 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; *************** *** 3391 **** ! chrI AUGUSTUS intron 553437 555147 0.82 + . transcript_id "g81.t1"; gene_id "g81"; --- 3391 ---- ! chrI AUGUSTUS intron 553437 555147 0.84 + . transcript_id "g81.t1"; gene_id "g81"; *************** *** 3393,3395 **** ! chrI AUGUSTUS intron 556390 556440 0.92 + . transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS intron 556532 556600 0.91 + . transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS intron 556772 556873 0.95 + . transcript_id "g81.t1"; gene_id "g81"; --- 3393,3395 ---- ! chrI AUGUSTUS intron 556390 556440 0.94 + . transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS intron 556532 556600 0.96 + . transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS intron 556772 556873 0.89 + . transcript_id "g81.t1"; gene_id "g81"; *************** *** 3397,3398 **** ! chrI AUGUSTUS CDS 553095 553436 0.81 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS CDS 555148 555212 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; --- 3397,3398 ---- ! chrI AUGUSTUS CDS 553095 553436 0.82 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS CDS 555148 555212 0.89 + 0 transcript_id "g81.t1"; gene_id "g81"; *************** *** 3400,3402 **** ! chrI AUGUSTUS CDS 556441 556531 0.95 + 1 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS CDS 556601 556771 0.94 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS CDS 556874 557016 0.95 + 0 transcript_id "g81.t1"; gene_id "g81"; --- 3400,3402 ---- ! chrI AUGUSTUS CDS 556441 556531 0.96 + 1 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS CDS 556601 556771 1 + 0 transcript_id "g81.t1"; gene_id "g81"; ! chrI AUGUSTUS CDS 556874 557016 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; *************** *** 3425,3426 **** ! chrI AUGUSTUS gene 558160 561878 0.12 + . g82 ! chrI AUGUSTUS transcript 558160 561878 0.12 + . g82.t1 --- 3425,3426 ---- ! chrI AUGUSTUS gene 558160 561878 0.11 + . g82 ! chrI AUGUSTUS transcript 558160 561878 0.11 + . g82.t1 *************** *** 3428 **** ! chrI AUGUSTUS 5'-UTR 558160 558195 0.8 + . transcript_id "g82.t1"; gene_id "g82"; --- 3428 ---- ! chrI AUGUSTUS 5'-UTR 558160 558195 0.81 + . transcript_id "g82.t1"; gene_id "g82"; *************** *** 3432 **** ! chrI AUGUSTUS internal 558775 558945 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; --- 3432 ---- ! chrI AUGUSTUS internal 558775 558945 1 + 0 transcript_id "g82.t1"; gene_id "g82"; *************** *** 3434 **** ! chrI AUGUSTUS internal 559820 559990 0.7 + 1 transcript_id "g82.t1"; gene_id "g82"; --- 3434 ---- ! chrI AUGUSTUS internal 559820 559990 0.75 + 1 transcript_id "g82.t1"; gene_id "g82"; *************** *** 3436,3438 **** ! chrI AUGUSTUS internal 561026 561196 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS internal 561349 561479 0.8 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS terminal 561527 561821 0.74 + 1 transcript_id "g82.t1"; gene_id "g82"; --- 3436,3438 ---- ! chrI AUGUSTUS internal 561026 561196 1 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS internal 561349 561479 0.81 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS terminal 561527 561821 0.76 + 1 transcript_id "g82.t1"; gene_id "g82"; *************** *** 3440 **** ! chrI AUGUSTUS intron 558729 558774 0.99 + . transcript_id "g82.t1"; gene_id "g82"; --- 3440 ---- ! chrI AUGUSTUS intron 558729 558774 1 + . transcript_id "g82.t1"; gene_id "g82"; *************** *** 3443 **** ! chrI AUGUSTUS intron 559991 560888 0.7 + . transcript_id "g82.t1"; gene_id "g82"; --- 3443 ---- ! chrI AUGUSTUS intron 559991 560888 0.75 + . transcript_id "g82.t1"; gene_id "g82"; *************** *** 3445,3446 **** ! chrI AUGUSTUS intron 561197 561348 0.8 + . transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS intron 561480 561526 0.8 + . transcript_id "g82.t1"; gene_id "g82"; --- 3445,3446 ---- ! chrI AUGUSTUS intron 561197 561348 0.81 + . transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS intron 561480 561526 0.81 + . transcript_id "g82.t1"; gene_id "g82"; *************** *** 3449 **** ! chrI AUGUSTUS CDS 558775 558945 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; --- 3449 ---- ! chrI AUGUSTUS CDS 558775 558945 1 + 0 transcript_id "g82.t1"; gene_id "g82"; *************** *** 3451 **** ! chrI AUGUSTUS CDS 559820 559990 0.7 + 1 transcript_id "g82.t1"; gene_id "g82"; --- 3451 ---- ! chrI AUGUSTUS CDS 559820 559990 0.75 + 1 transcript_id "g82.t1"; gene_id "g82"; *************** *** 3453,3455 **** ! chrI AUGUSTUS CDS 561026 561196 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS CDS 561349 561479 0.8 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS CDS 561527 561821 0.74 + 1 transcript_id "g82.t1"; gene_id "g82"; --- 3453,3455 ---- ! chrI AUGUSTUS CDS 561026 561196 1 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS CDS 561349 561479 0.81 + 0 transcript_id "g82.t1"; gene_id "g82"; ! chrI AUGUSTUS CDS 561527 561821 0.76 + 1 transcript_id "g82.t1"; gene_id "g82"; *************** *** 3457 **** ! chrI AUGUSTUS 3'-UTR 561822 561878 0.2 + . transcript_id "g82.t1"; gene_id "g82"; --- 3457 ---- ! chrI AUGUSTUS 3'-UTR 561822 561878 0.22 + . transcript_id "g82.t1"; gene_id "g82"; *************** *** 3477,3478 **** ! chrI AUGUSTUS gene 562620 564368 0.25 + . g83 ! chrI AUGUSTUS transcript 562620 564368 0.25 + . g83.t1 --- 3477,3478 ---- ! chrI AUGUSTUS gene 562620 564368 0.21 + . g83 ! chrI AUGUSTUS transcript 562620 564368 0.21 + . g83.t1 *************** *** 3480 **** ! chrI AUGUSTUS 5'-UTR 562620 562668 0.48 + . transcript_id "g83.t1"; gene_id "g83"; --- 3480 ---- ! chrI AUGUSTUS 5'-UTR 562620 562668 0.4 + . transcript_id "g83.t1"; gene_id "g83"; *************** *** 3482,3483 **** ! chrI AUGUSTUS single 562669 562998 0.97 + 0 transcript_id "g83.t1"; gene_id "g83"; ! chrI AUGUSTUS CDS 562669 562998 0.97 + 0 transcript_id "g83.t1"; gene_id "g83"; --- 3482,3483 ---- ! chrI AUGUSTUS single 562669 562998 0.96 + 0 transcript_id "g83.t1"; gene_id "g83"; ! chrI AUGUSTUS CDS 562669 562998 0.96 + 0 transcript_id "g83.t1"; gene_id "g83"; *************** *** 3485,3486 **** ! chrI AUGUSTUS 3'-UTR 562999 563096 0.8 + . transcript_id "g83.t1"; gene_id "g83"; ! chrI AUGUSTUS 3'-UTR 564153 564368 0.58 + . transcript_id "g83.t1"; gene_id "g83"; --- 3485,3486 ---- ! chrI AUGUSTUS 3'-UTR 562999 563096 0.7 + . transcript_id "g83.t1"; gene_id "g83"; ! chrI AUGUSTUS 3'-UTR 564153 564368 0.6 + . transcript_id "g83.t1"; gene_id "g83"; *************** *** 3503,3504 **** ! chrI AUGUSTUS gene 567530 568264 0.1 + . g84 ! chrI AUGUSTUS transcript 567530 568264 0.1 + . g84.t1 --- 3503,3504 ---- ! chrI AUGUSTUS gene 567530 568264 0.18 + . g84 ! chrI AUGUSTUS transcript 567530 568264 0.18 + . g84.t1 *************** *** 3506 **** ! chrI AUGUSTUS 5'-UTR 567530 567806 0.25 + . transcript_id "g84.t1"; gene_id "g84"; --- 3506 ---- ! chrI AUGUSTUS 5'-UTR 567530 567806 0.35 + . transcript_id "g84.t1"; gene_id "g84"; *************** *** 3508 **** ! chrI AUGUSTUS initial 567807 567967 0.32 + 0 transcript_id "g84.t1"; gene_id "g84"; --- 3508 ---- ! chrI AUGUSTUS initial 567807 567967 0.45 + 0 transcript_id "g84.t1"; gene_id "g84"; *************** *** 3513 **** ! chrI AUGUSTUS CDS 567807 567967 0.32 + 0 transcript_id "g84.t1"; gene_id "g84"; --- 3513 ---- ! chrI AUGUSTUS CDS 567807 567967 0.45 + 0 transcript_id "g84.t1"; gene_id "g84"; *************** *** 3517 **** ! chrI AUGUSTUS 3'-UTR 568222 568264 0.38 + . transcript_id "g84.t1"; gene_id "g84"; --- 3517 ---- ! chrI AUGUSTUS 3'-UTR 568222 568264 0.4 + . transcript_id "g84.t1"; gene_id "g84"; *************** *** 3532,3533 **** ! chrI AUGUSTUS gene 568840 570774 0.29 + . g85 ! chrI AUGUSTUS transcript 568840 570774 0.29 + . g85.t1 --- 3532,3533 ---- ! chrI AUGUSTUS gene 568840 570774 0.33 + . g85 ! chrI AUGUSTUS transcript 568840 570774 0.33 + . g85.t1 *************** *** 3535 **** ! chrI AUGUSTUS 5'-UTR 568840 568872 0.35 + . transcript_id "g85.t1"; gene_id "g85"; --- 3535 ---- ! chrI AUGUSTUS 5'-UTR 568840 568872 0.36 + . transcript_id "g85.t1"; gene_id "g85"; *************** *** 3537,3550 **** ! chrI AUGUSTUS initial 568873 568959 0.9 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS internal 569838 570026 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS internal 570073 570145 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS internal 570511 570597 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS terminal 570647 570747 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 568960 569837 0.97 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 570027 570072 0.91 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 570146 570510 0.91 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 570598 570646 0.99 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 568873 568959 0.9 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 569838 570026 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 570073 570145 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 570511 570597 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 570647 570747 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; --- 3537,3550 ---- ! chrI AUGUSTUS initial 568873 568959 0.93 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS internal 569838 570026 0.95 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS internal 570073 570145 0.94 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS internal 570511 570597 1 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS terminal 570647 570747 1 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 568960 569837 0.98 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 570027 570072 0.94 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 570146 570510 0.95 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS intron 570598 570646 1 + . transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 568873 568959 0.93 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 569838 570026 0.95 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 570073 570145 0.94 + 0 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 570511 570597 1 + 2 transcript_id "g85.t1"; gene_id "g85"; ! chrI AUGUSTUS CDS 570647 570747 1 + 2 transcript_id "g85.t1"; gene_id "g85"; *************** *** 3552 **** ! chrI AUGUSTUS 3'-UTR 570748 570774 0.91 + . transcript_id "g85.t1"; gene_id "g85"; --- 3552 ---- ! chrI AUGUSTUS 3'-UTR 570748 570774 0.89 + . transcript_id "g85.t1"; gene_id "g85"; *************** *** 3569,3570 **** ! chrI AUGUSTUS gene 571763 576039 0.21 - . g86 ! chrI AUGUSTUS transcript 571763 576039 0.21 - . g86.t1 --- 3569,3570 ---- ! chrI AUGUSTUS gene 571763 576039 0.14 - . g86 ! chrI AUGUSTUS transcript 571763 576039 0.14 - . g86.t1 *************** *** 3572 **** ! chrI AUGUSTUS 3'-UTR 571763 571988 0.22 - . transcript_id "g86.t1"; gene_id "g86"; --- 3572 ---- ! chrI AUGUSTUS 3'-UTR 571763 571988 0.17 - . transcript_id "g86.t1"; gene_id "g86"; *************** *** 3576,3577 **** ! chrI AUGUSTUS internal 572357 572520 1 - 1 transcript_id "g86.t1"; gene_id "g86"; ! chrI AUGUSTUS internal 572571 572737 1 - 0 transcript_id "g86.t1"; gene_id "g86"; --- 3576,3577 ---- ! chrI AUGUSTUS internal 572357 572520 0.98 - 1 transcript_id "g86.t1"; gene_id "g86"; ! chrI AUGUSTUS internal 572571 572737 0.98 - 0 transcript_id "g86.t1"; gene_id "g86"; *************** *** 3580 **** ! chrI AUGUSTUS internal 574314 574445 0.99 - 2 transcript_id "g86.t1"; gene_id "g86"; --- 3580 ---- ! chrI AUGUSTUS internal 574314 574445 1 - 2 transcript_id "g86.t1"; gene_id "g86"; *************** *** 3583 **** ! chrI AUGUSTUS initial 575842 576007 0.87 - 0 transcript_id "g86.t1"; gene_id "g86"; --- 3583 ---- ! chrI AUGUSTUS initial 575842 576007 0.92 - 0 transcript_id "g86.t1"; gene_id "g86"; *************** *** 3586,3587 **** ! chrI AUGUSTUS intron 572521 572570 1 - . transcript_id "g86.t1"; gene_id "g86"; ! chrI AUGUSTUS intron 572738 573741 1 - . transcript_id "g86.t1"; gene_id "g86"; --- 3586,3587 ---- ! chrI AUGUSTUS intron 572521 572570 0.98 - . transcript_id "g86.t1"; gene_id "g86"; ! chrI AUGUSTUS intron 572738 573741 0.98 - . transcript_id "g86.t1"; gene_id "g86"; *************** *** 3590 **** ! chrI AUGUSTUS intron 574446 574521 0.99 - . transcript_id "g86.t1"; gene_id "g86"; --- 3590 ---- ! chrI AUGUSTUS intron 574446 574521 1 - . transcript_id "g86.t1"; gene_id "g86"; *************** *** 3595,3596 **** ! chrI AUGUSTUS CDS 572357 572520 1 - 1 transcript_id "g86.t1"; gene_id "g86"; ! chrI AUGUSTUS CDS 572571 572737 1 - 0 transcript_id "g86.t1"; gene_id "g86"; --- 3595,3596 ---- ! chrI AUGUSTUS CDS 572357 572520 0.98 - 1 transcript_id "g86.t1"; gene_id "g86"; ! chrI AUGUSTUS CDS 572571 572737 0.98 - 0 transcript_id "g86.t1"; gene_id "g86"; *************** *** 3599 **** ! chrI AUGUSTUS CDS 574314 574445 0.99 - 2 transcript_id "g86.t1"; gene_id "g86"; --- 3599 ---- ! chrI AUGUSTUS CDS 574314 574445 1 - 2 transcript_id "g86.t1"; gene_id "g86"; *************** *** 3602 **** ! chrI AUGUSTUS CDS 575842 576007 0.87 - 0 transcript_id "g86.t1"; gene_id "g86"; --- 3602 ---- ! chrI AUGUSTUS CDS 575842 576007 0.92 - 0 transcript_id "g86.t1"; gene_id "g86"; *************** *** 3604 **** ! chrI AUGUSTUS 5'-UTR 576008 576039 0.86 - . transcript_id "g86.t1"; gene_id "g86"; --- 3604 ---- ! chrI AUGUSTUS 5'-UTR 576008 576039 0.85 - . transcript_id "g86.t1"; gene_id "g86"; *************** *** 3625,3626 **** ! chrI AUGUSTUS gene 581031 586219 0.04 - . g87 ! chrI AUGUSTUS transcript 581031 586219 0.04 - . g87.t1 --- 3625,3626 ---- ! chrI AUGUSTUS gene 581031 586219 0.08 - . g87 ! chrI AUGUSTUS transcript 581031 586219 0.08 - . g87.t1 *************** *** 3628 **** ! chrI AUGUSTUS 3'-UTR 581031 581203 0.3 - . transcript_id "g87.t1"; gene_id "g87"; --- 3628 ---- ! chrI AUGUSTUS 3'-UTR 581031 581203 0.28 - . transcript_id "g87.t1"; gene_id "g87"; *************** *** 3633 **** ! chrI AUGUSTUS initial 585942 586123 0.99 - 0 transcript_id "g87.t1"; gene_id "g87"; --- 3633 ---- ! chrI AUGUSTUS initial 585942 586123 1 - 0 transcript_id "g87.t1"; gene_id "g87"; *************** *** 3640 **** ! chrI AUGUSTUS CDS 585942 586123 0.99 - 0 transcript_id "g87.t1"; gene_id "g87"; --- 3640 ---- ! chrI AUGUSTUS CDS 585942 586123 1 - 0 transcript_id "g87.t1"; gene_id "g87"; *************** *** 3642 **** ! chrI AUGUSTUS 5'-UTR 586124 586219 0.19 - . transcript_id "g87.t1"; gene_id "g87"; --- 3642 ---- ! chrI AUGUSTUS 5'-UTR 586124 586219 0.27 - . transcript_id "g87.t1"; gene_id "g87"; *************** *** 3660,3661 **** ! chrI AUGUSTUS gene 587530 595359 0.02 - . g88 ! chrI AUGUSTUS transcript 587530 595359 0.02 - . g88.t1 --- 3660,3661 ---- ! chrI AUGUSTUS gene 587530 595359 0.04 - . g88 ! chrI AUGUSTUS transcript 587530 595359 0.04 - . g88.t1 *************** *** 3665,3671 **** ! chrI AUGUSTUS terminal 587707 587837 0.98 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 589053 589268 0.52 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 589450 589637 1 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 589690 589809 0.98 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 590536 590951 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 591002 591145 0.59 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 591888 592388 1 - 0 transcript_id "g88.t1"; gene_id "g88"; --- 3665,3671 ---- ! chrI AUGUSTUS terminal 587707 587837 1 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 589053 589268 0.65 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 589450 589637 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 589690 589809 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 590536 590951 1 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 591002 591145 0.58 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS internal 591888 592388 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; *************** *** 3673 **** ! chrI AUGUSTUS internal 593496 593770 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; --- 3673 ---- ! chrI AUGUSTUS internal 593496 593770 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; *************** *** 3676,3683 **** ! chrI AUGUSTUS internal 594388 594532 0.99 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS initial 595201 595243 0.77 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 587838 589052 0.94 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 589269 589449 0.55 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 589638 589689 0.98 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 589810 590535 0.99 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 590952 591001 0.59 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 591146 591887 0.57 - . transcript_id "g88.t1"; gene_id "g88"; --- 3676,3683 ---- ! chrI AUGUSTUS internal 594388 594532 1 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS initial 595201 595243 0.84 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 587838 589052 0.96 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 589269 589449 0.67 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 589638 589689 0.99 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 589810 590535 1 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 590952 591001 0.58 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS intron 591146 591887 0.53 - . transcript_id "g88.t1"; gene_id "g88"; *************** *** 3685 **** ! chrI AUGUSTUS intron 592617 593495 0.95 - . transcript_id "g88.t1"; gene_id "g88"; --- 3685 ---- ! chrI AUGUSTUS intron 592617 593495 0.97 - . transcript_id "g88.t1"; gene_id "g88"; *************** *** 3689,3696 **** ! chrI AUGUSTUS intron 594533 595200 0.77 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 587707 587837 0.98 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 589053 589268 0.52 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 589450 589637 1 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 589690 589809 0.98 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 590536 590951 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 591002 591145 0.59 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 591888 592388 1 - 0 transcript_id "g88.t1"; gene_id "g88"; --- 3689,3696 ---- ! chrI AUGUSTUS intron 594533 595200 0.84 - . transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 587707 587837 1 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 589053 589268 0.65 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 589450 589637 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 589690 589809 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 590536 590951 1 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 591002 591145 0.58 - 0 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 591888 592388 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; *************** *** 3698 **** ! chrI AUGUSTUS CDS 593496 593770 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; --- 3698 ---- ! chrI AUGUSTUS CDS 593496 593770 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; *************** *** 3701,3702 **** ! chrI AUGUSTUS CDS 594388 594532 0.99 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 595201 595243 0.77 - 0 transcript_id "g88.t1"; gene_id "g88"; --- 3701,3702 ---- ! chrI AUGUSTUS CDS 594388 594532 1 - 2 transcript_id "g88.t1"; gene_id "g88"; ! chrI AUGUSTUS CDS 595201 595243 0.84 - 0 transcript_id "g88.t1"; gene_id "g88"; *************** *** 3728,3729 **** ! chrI AUGUSTUS gene 599810 602650 0.31 + . g89 ! chrI AUGUSTUS transcript 599810 602650 0.31 + . g89.t1 --- 3728,3729 ---- ! chrI AUGUSTUS gene 599810 602650 0.2 + . g89 ! chrI AUGUSTUS transcript 599810 602650 0.2 + . g89.t1 *************** *** 3731 **** ! chrI AUGUSTUS 5'-UTR 599810 599989 0.34 + . transcript_id "g89.t1"; gene_id "g89"; --- 3731 ---- ! chrI AUGUSTUS 5'-UTR 599810 599989 0.27 + . transcript_id "g89.t1"; gene_id "g89"; *************** *** 3733 **** ! chrI AUGUSTUS initial 599990 600035 1 + 0 transcript_id "g89.t1"; gene_id "g89"; --- 3733 ---- ! chrI AUGUSTUS initial 599990 600035 0.99 + 0 transcript_id "g89.t1"; gene_id "g89"; *************** *** 3736,3738 **** ! chrI AUGUSTUS internal 600516 600633 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS internal 600998 601427 0.88 + 0 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS internal 601470 601544 0.87 + 2 transcript_id "g89.t1"; gene_id "g89"; --- 3736,3738 ---- ! chrI AUGUSTUS internal 600516 600633 1 + 1 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS internal 600998 601427 0.82 + 0 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS internal 601470 601544 0.8 + 2 transcript_id "g89.t1"; gene_id "g89"; *************** *** 3741 **** ! chrI AUGUSTUS internal 602165 602392 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; --- 3741 ---- ! chrI AUGUSTUS internal 602165 602392 1 + 1 transcript_id "g89.t1"; gene_id "g89"; *************** *** 3743 **** ! chrI AUGUSTUS intron 600036 600080 1 + . transcript_id "g89.t1"; gene_id "g89"; --- 3743 ---- ! chrI AUGUSTUS intron 600036 600080 0.99 + . transcript_id "g89.t1"; gene_id "g89"; *************** *** 3746,3748 **** ! chrI AUGUSTUS intron 600634 600997 0.99 + . transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS intron 601428 601469 0.87 + . transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS intron 601545 601603 0.99 + . transcript_id "g89.t1"; gene_id "g89"; --- 3746,3748 ---- ! chrI AUGUSTUS intron 600634 600997 1 + . transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS intron 601428 601469 0.8 + . transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS intron 601545 601603 0.98 + . transcript_id "g89.t1"; gene_id "g89"; *************** *** 3751,3752 **** ! chrI AUGUSTUS intron 602393 602477 0.99 + . transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS CDS 599990 600035 1 + 0 transcript_id "g89.t1"; gene_id "g89"; --- 3751,3752 ---- ! chrI AUGUSTUS intron 602393 602477 1 + . transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS CDS 599990 600035 0.99 + 0 transcript_id "g89.t1"; gene_id "g89"; *************** *** 3755,3757 **** ! chrI AUGUSTUS CDS 600516 600633 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS CDS 600998 601427 0.88 + 0 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS CDS 601470 601544 0.87 + 2 transcript_id "g89.t1"; gene_id "g89"; --- 3755,3757 ---- ! chrI AUGUSTUS CDS 600516 600633 1 + 1 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS CDS 600998 601427 0.82 + 0 transcript_id "g89.t1"; gene_id "g89"; ! chrI AUGUSTUS CDS 601470 601544 0.8 + 2 transcript_id "g89.t1"; gene_id "g89"; *************** *** 3760 **** ! chrI AUGUSTUS CDS 602165 602392 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; --- 3760 ---- ! chrI AUGUSTUS CDS 602165 602392 1 + 1 transcript_id "g89.t1"; gene_id "g89"; *************** *** 3763 **** ! chrI AUGUSTUS 3'-UTR 602629 602650 1 + . transcript_id "g89.t1"; gene_id "g89"; --- 3763 ---- ! chrI AUGUSTUS 3'-UTR 602629 602650 0.97 + . transcript_id "g89.t1"; gene_id "g89"; *************** *** 3782,3783 **** ! chrI AUGUSTUS gene 604080 605800 0.36 + . g90 ! chrI AUGUSTUS transcript 604080 605800 0.36 + . g90.t1 --- 3782,3783 ---- ! chrI AUGUSTUS gene 604080 605800 0.27 + . g90 ! chrI AUGUSTUS transcript 604080 605800 0.27 + . g90.t1 *************** *** 3785 **** ! chrI AUGUSTUS 5'-UTR 604080 604239 0.8 + . transcript_id "g90.t1"; gene_id "g90"; --- 3785 ---- ! chrI AUGUSTUS 5'-UTR 604080 604239 0.81 + . transcript_id "g90.t1"; gene_id "g90"; *************** *** 3787,3791 **** ! chrI AUGUSTUS initial 604240 604307 0.78 + 0 transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS terminal 605394 605592 0.72 + 1 transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS intron 604308 605393 0.71 + . transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS CDS 604240 604307 0.78 + 0 transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS CDS 605394 605592 0.72 + 1 transcript_id "g90.t1"; gene_id "g90"; --- 3787,3791 ---- ! chrI AUGUSTUS initial 604240 604307 0.9 + 0 transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS terminal 605394 605592 0.79 + 1 transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS intron 604308 605393 0.78 + . transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS CDS 604240 604307 0.9 + 0 transcript_id "g90.t1"; gene_id "g90"; ! chrI AUGUSTUS CDS 605394 605592 0.79 + 1 transcript_id "g90.t1"; gene_id "g90"; *************** *** 3793 **** ! chrI AUGUSTUS 3'-UTR 605593 605800 0.37 + . transcript_id "g90.t1"; gene_id "g90"; --- 3793 ---- ! chrI AUGUSTUS 3'-UTR 605593 605800 0.34 + . transcript_id "g90.t1"; gene_id "g90"; *************** *** 3809,3810 **** ! chrI AUGUSTUS gene 606680 613299 0.57 + . g91 ! chrI AUGUSTUS transcript 606680 613299 0.57 + . g91.t1 --- 3809,3810 ---- ! chrI AUGUSTUS gene 606680 613299 0.51 + . g91 ! chrI AUGUSTUS transcript 606680 613299 0.51 + . g91.t1 *************** *** 3812 **** ! chrI AUGUSTUS 5'-UTR 606680 606741 0.66 + . transcript_id "g91.t1"; gene_id "g91"; --- 3812 ---- ! chrI AUGUSTUS 5'-UTR 606680 606741 0.63 + . transcript_id "g91.t1"; gene_id "g91"; *************** *** 3814,3818 **** ! chrI AUGUSTUS initial 606742 606933 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 607213 607296 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 608189 608309 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 608862 609028 0.99 + 2 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 609890 610309 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; --- 3814,3818 ---- ! chrI AUGUSTUS initial 606742 606933 0.96 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 607213 607296 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 608189 608309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 608862 609028 0.97 + 2 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS internal 609890 610309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; *************** *** 3821,3822 **** ! chrI AUGUSTUS internal 612004 612096 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS terminal 612789 613151 1 + 0 transcript_id "g91.t1"; gene_id "g91"; --- 3821,3822 ---- ! chrI AUGUSTUS internal 612004 612096 1 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS terminal 612789 613151 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; *************** *** 3824,3826 **** ! chrI AUGUSTUS intron 607297 608188 0.99 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS intron 608310 608861 0.98 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS intron 609029 609889 0.99 + . transcript_id "g91.t1"; gene_id "g91"; --- 3824,3826 ---- ! chrI AUGUSTUS intron 607297 608188 0.98 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS intron 608310 608861 0.99 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS intron 609029 609889 0.98 + . transcript_id "g91.t1"; gene_id "g91"; *************** *** 3829,3835 **** ! chrI AUGUSTUS intron 611957 612003 0.99 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS intron 612097 612788 0.99 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 606742 606933 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 607213 607296 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 608189 608309 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 608862 609028 0.99 + 2 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 609890 610309 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; --- 3829,3835 ---- ! chrI AUGUSTUS intron 611957 612003 1 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS intron 612097 612788 1 + . transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 606742 606933 0.96 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 607213 607296 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 608189 608309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 608862 609028 0.97 + 2 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 609890 610309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; *************** *** 3838,3839 **** ! chrI AUGUSTUS CDS 612004 612096 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 612789 613151 1 + 0 transcript_id "g91.t1"; gene_id "g91"; --- 3838,3839 ---- ! chrI AUGUSTUS CDS 612004 612096 1 + 0 transcript_id "g91.t1"; gene_id "g91"; ! chrI AUGUSTUS CDS 612789 613151 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; *************** *** 3841 **** ! chrI AUGUSTUS 3'-UTR 613152 613299 0.94 + . transcript_id "g91.t1"; gene_id "g91"; --- 3841 ---- ! chrI AUGUSTUS 3'-UTR 613152 613299 0.89 + . transcript_id "g91.t1"; gene_id "g91"; *************** *** 3862,3863 **** ! chrI AUGUSTUS gene 613760 617362 0.07 + . g92 ! chrI AUGUSTUS transcript 613760 617362 0.07 + . g92.t1 --- 3862,3863 ---- ! chrI AUGUSTUS gene 613760 617362 0.06 + . g92 ! chrI AUGUSTUS transcript 613760 617362 0.06 + . g92.t1 *************** *** 3865 **** ! chrI AUGUSTUS 5'-UTR 613760 614031 0.24 + . transcript_id "g92.t1"; gene_id "g92"; --- 3865 ---- ! chrI AUGUSTUS 5'-UTR 613760 614031 0.27 + . transcript_id "g92.t1"; gene_id "g92"; *************** *** 3867,3880 **** ! chrI AUGUSTUS initial 614032 614490 0.82 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS internal 614807 614820 0.45 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS internal 615078 615155 0.65 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS internal 615849 615938 0.92 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS terminal 617092 617110 0.64 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 614491 614806 0.66 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 614821 615077 0.55 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 615156 615848 0.91 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 615939 617091 0.64 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 614032 614490 0.82 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 614807 614820 0.45 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 615078 615155 0.65 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 615849 615938 0.92 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 617092 617110 0.64 + 1 transcript_id "g92.t1"; gene_id "g92"; --- 3867,3880 ---- ! chrI AUGUSTUS initial 614032 614490 0.8 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS internal 614807 614820 0.44 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS internal 615078 615155 0.58 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS internal 615849 615938 0.96 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS terminal 617092 617110 0.6 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 614491 614806 0.64 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 614821 615077 0.52 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 615156 615848 0.88 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS intron 615939 617091 0.59 + . transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 614032 614490 0.8 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 614807 614820 0.44 + 0 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 615078 615155 0.58 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 615849 615938 0.96 + 1 transcript_id "g92.t1"; gene_id "g92"; ! chrI AUGUSTUS CDS 617092 617110 0.6 + 1 transcript_id "g92.t1"; gene_id "g92"; *************** *** 3899,3900 **** ! chrI AUGUSTUS gene 617490 620428 0.88 + . g93 ! chrI AUGUSTUS transcript 617490 620428 0.88 + . g93.t1 --- 3899,3900 ---- ! chrI AUGUSTUS gene 617490 620428 0.82 + . g93 ! chrI AUGUSTUS transcript 617490 620428 0.82 + . g93.t1 *************** *** 3902 **** ! chrI AUGUSTUS 5'-UTR 617490 617560 1 + . transcript_id "g93.t1"; gene_id "g93"; --- 3902 ---- ! chrI AUGUSTUS 5'-UTR 617490 617560 0.98 + . transcript_id "g93.t1"; gene_id "g93"; *************** *** 3908 **** ! chrI AUGUSTUS internal 620058 620192 0.99 + 0 transcript_id "g93.t1"; gene_id "g93"; --- 3908 ---- ! chrI AUGUSTUS internal 620058 620192 1 + 0 transcript_id "g93.t1"; gene_id "g93"; *************** *** 3911 **** ! chrI AUGUSTUS intron 617847 617889 1 + . transcript_id "g93.t1"; gene_id "g93"; --- 3911 ---- ! chrI AUGUSTUS intron 617847 617889 0.99 + . transcript_id "g93.t1"; gene_id "g93"; *************** *** 3914 **** ! chrI AUGUSTUS intron 620193 620239 0.99 + . transcript_id "g93.t1"; gene_id "g93"; --- 3914 ---- ! chrI AUGUSTUS intron 620193 620239 1 + . transcript_id "g93.t1"; gene_id "g93"; *************** *** 3919 **** ! chrI AUGUSTUS CDS 620058 620192 0.99 + 0 transcript_id "g93.t1"; gene_id "g93"; --- 3919 ---- ! chrI AUGUSTUS CDS 620058 620192 1 + 0 transcript_id "g93.t1"; gene_id "g93"; *************** *** 3922 **** ! chrI AUGUSTUS 3'-UTR 620351 620428 0.91 + . transcript_id "g93.t1"; gene_id "g93"; --- 3922 ---- ! chrI AUGUSTUS 3'-UTR 620351 620428 0.85 + . transcript_id "g93.t1"; gene_id "g93"; *************** *** 3941,3942 **** ! chrI AUGUSTUS gene 620530 621860 0.23 + . g94 ! chrI AUGUSTUS transcript 620530 621860 0.23 + . g94.t1 --- 3941,3942 ---- ! chrI AUGUSTUS gene 620530 621860 0.25 + . g94 ! chrI AUGUSTUS transcript 620530 621860 0.25 + . g94.t1 *************** *** 3944 **** ! chrI AUGUSTUS 5'-UTR 620530 620659 0.48 + . transcript_id "g94.t1"; gene_id "g94"; --- 3944 ---- ! chrI AUGUSTUS 5'-UTR 620530 620659 0.56 + . transcript_id "g94.t1"; gene_id "g94"; *************** *** 3946 **** ! chrI AUGUSTUS initial 620660 620824 0.99 + 0 transcript_id "g94.t1"; gene_id "g94"; --- 3946 ---- ! chrI AUGUSTUS initial 620660 620824 1 + 0 transcript_id "g94.t1"; gene_id "g94"; *************** *** 3953 **** ! chrI AUGUSTUS CDS 620660 620824 0.99 + 0 transcript_id "g94.t1"; gene_id "g94"; --- 3953 ---- ! chrI AUGUSTUS CDS 620660 620824 1 + 0 transcript_id "g94.t1"; gene_id "g94"; *************** *** 3958 **** ! chrI AUGUSTUS 3'-UTR 621736 621860 0.46 + . transcript_id "g94.t1"; gene_id "g94"; --- 3958 ---- ! chrI AUGUSTUS 3'-UTR 621736 621860 0.47 + . transcript_id "g94.t1"; gene_id "g94"; *************** *** 3976,3977 **** ! chrI AUGUSTUS gene 621920 623160 0.16 + . g95 ! chrI AUGUSTUS transcript 621920 623160 0.16 + . g95.t1 --- 3976,3977 ---- ! chrI AUGUSTUS gene 621920 623160 0.18 + . g95 ! chrI AUGUSTUS transcript 621920 623160 0.18 + . g95.t1 *************** *** 3979 **** ! chrI AUGUSTUS 5'-UTR 621920 621957 0.26 + . transcript_id "g95.t1"; gene_id "g95"; --- 3979 ---- ! chrI AUGUSTUS 5'-UTR 621920 621957 0.3 + . transcript_id "g95.t1"; gene_id "g95"; *************** *** 3981,3982 **** ! chrI AUGUSTUS initial 621958 622015 0.47 + 0 transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS internal 622319 622630 0.56 + 2 transcript_id "g95.t1"; gene_id "g95"; --- 3981,3982 ---- ! chrI AUGUSTUS initial 621958 622015 0.43 + 0 transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS internal 622319 622630 0.52 + 2 transcript_id "g95.t1"; gene_id "g95"; *************** *** 3984,3987 **** ! chrI AUGUSTUS intron 622016 622318 0.56 + . transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS intron 622631 622893 1 + . transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS CDS 621958 622015 0.47 + 0 transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS CDS 622319 622630 0.56 + 2 transcript_id "g95.t1"; gene_id "g95"; --- 3984,3987 ---- ! chrI AUGUSTUS intron 622016 622318 0.52 + . transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS intron 622631 622893 0.99 + . transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS CDS 621958 622015 0.43 + 0 transcript_id "g95.t1"; gene_id "g95"; ! chrI AUGUSTUS CDS 622319 622630 0.52 + 2 transcript_id "g95.t1"; gene_id "g95"; *************** *** 3990 **** ! chrI AUGUSTUS 3'-UTR 623118 623160 0.67 + . transcript_id "g95.t1"; gene_id "g95"; --- 3990 ---- ! chrI AUGUSTUS 3'-UTR 623118 623160 0.72 + . transcript_id "g95.t1"; gene_id "g95"; *************** *** 4007,4008 **** ! chrI AUGUSTUS gene 623176 628369 0.42 - . g96 ! chrI AUGUSTUS transcript 623176 628369 0.42 - . g96.t1 --- 4007,4008 ---- ! chrI AUGUSTUS gene 623176 628369 0.39 - . g96 ! chrI AUGUSTUS transcript 623176 628369 0.39 - . g96.t1 *************** *** 4010 **** ! chrI AUGUSTUS 3'-UTR 623176 623360 0.8 - . transcript_id "g96.t1"; gene_id "g96"; --- 4010 ---- ! chrI AUGUSTUS 3'-UTR 623176 623360 0.78 - . transcript_id "g96.t1"; gene_id "g96"; *************** *** 4013,4014 **** ! chrI AUGUSTUS internal 623645 623956 0.76 - 0 transcript_id "g96.t1"; gene_id "g96"; ! chrI AUGUSTUS internal 624016 624544 0.99 - 1 transcript_id "g96.t1"; gene_id "g96"; --- 4013,4014 ---- ! chrI AUGUSTUS internal 623645 623956 0.8 - 0 transcript_id "g96.t1"; gene_id "g96"; ! chrI AUGUSTUS internal 624016 624544 1 - 1 transcript_id "g96.t1"; gene_id "g96"; *************** *** 4019,4020 **** ! chrI AUGUSTUS intron 623430 623644 0.76 - . transcript_id "g96.t1"; gene_id "g96"; ! chrI AUGUSTUS intron 623957 624015 0.99 - . transcript_id "g96.t1"; gene_id "g96"; --- 4019,4020 ---- ! chrI AUGUSTUS intron 623430 623644 0.8 - . transcript_id "g96.t1"; gene_id "g96"; ! chrI AUGUSTUS intron 623957 624015 1 - . transcript_id "g96.t1"; gene_id "g96"; *************** *** 4026,4027 **** ! chrI AUGUSTUS CDS 623645 623956 0.76 - 0 transcript_id "g96.t1"; gene_id "g96"; ! chrI AUGUSTUS CDS 624016 624544 0.99 - 1 transcript_id "g96.t1"; gene_id "g96"; --- 4026,4027 ---- ! chrI AUGUSTUS CDS 623645 623956 0.8 - 0 transcript_id "g96.t1"; gene_id "g96"; ! chrI AUGUSTUS CDS 624016 624544 1 - 1 transcript_id "g96.t1"; gene_id "g96"; *************** *** 4033 **** ! chrI AUGUSTUS 5'-UTR 628114 628369 0.68 - . transcript_id "g96.t1"; gene_id "g96"; --- 4033 ---- ! chrI AUGUSTUS 5'-UTR 628114 628369 0.65 - . transcript_id "g96.t1"; gene_id "g96"; *************** *** 4056,4057 **** ! chrI AUGUSTUS gene 628650 630504 0.1 + . g97 ! chrI AUGUSTUS transcript 628650 630504 0.1 + . g97.t1 --- 4056,4057 ---- ! chrI AUGUSTUS gene 628650 630504 0.15 + . g97 ! chrI AUGUSTUS transcript 628650 630504 0.15 + . g97.t1 *************** *** 4059 **** ! chrI AUGUSTUS 5'-UTR 628650 628681 0.16 + . transcript_id "g97.t1"; gene_id "g97"; --- 4059 ---- ! chrI AUGUSTUS 5'-UTR 628650 628681 0.25 + . transcript_id "g97.t1"; gene_id "g97"; *************** *** 4061 **** ! chrI AUGUSTUS initial 628682 628725 0.43 + 0 transcript_id "g97.t1"; gene_id "g97"; --- 4061 ---- ! chrI AUGUSTUS initial 628682 628725 0.41 + 0 transcript_id "g97.t1"; gene_id "g97"; *************** *** 4063,4065 **** ! chrI AUGUSTUS internal 629949 630078 1 + 2 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS internal 630127 630160 0.85 + 1 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS internal 630205 630270 0.85 + 0 transcript_id "g97.t1"; gene_id "g97"; --- 4063,4065 ---- ! chrI AUGUSTUS internal 629949 630078 0.98 + 2 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS internal 630127 630160 0.87 + 1 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS internal 630205 630270 0.86 + 0 transcript_id "g97.t1"; gene_id "g97"; *************** *** 4067,4072 **** ! chrI AUGUSTUS intron 628726 629746 0.46 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 629848 629948 0.77 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 630079 630126 0.85 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 630161 630204 0.85 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 630271 630325 1 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS CDS 628682 628725 0.43 + 0 transcript_id "g97.t1"; gene_id "g97"; --- 4067,4072 ---- ! chrI AUGUSTUS intron 628726 629746 0.43 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 629848 629948 0.8 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 630079 630126 0.87 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 630161 630204 0.86 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS intron 630271 630325 0.98 + . transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS CDS 628682 628725 0.41 + 0 transcript_id "g97.t1"; gene_id "g97"; *************** *** 4074,4076 **** ! chrI AUGUSTUS CDS 629949 630078 1 + 2 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS CDS 630127 630160 0.85 + 1 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS CDS 630205 630270 0.85 + 0 transcript_id "g97.t1"; gene_id "g97"; --- 4074,4076 ---- ! chrI AUGUSTUS CDS 629949 630078 0.98 + 2 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS CDS 630127 630160 0.87 + 1 transcript_id "g97.t1"; gene_id "g97"; ! chrI AUGUSTUS CDS 630205 630270 0.86 + 0 transcript_id "g97.t1"; gene_id "g97"; *************** *** 4079 **** ! chrI AUGUSTUS 3'-UTR 630437 630504 0.78 + . transcript_id "g97.t1"; gene_id "g97"; --- 4079 ---- ! chrI AUGUSTUS 3'-UTR 630437 630504 0.84 + . transcript_id "g97.t1"; gene_id "g97"; *************** *** 4095,4096 **** ! chrI AUGUSTUS gene 630580 637456 0.04 + . g98 ! chrI AUGUSTUS transcript 630580 637456 0.04 + . g98.t1 --- 4095,4096 ---- ! chrI AUGUSTUS gene 630580 637456 0.03 + . g98 ! chrI AUGUSTUS transcript 630580 637456 0.03 + . g98.t1 *************** *** 4098 **** ! chrI AUGUSTUS 5'-UTR 630580 630623 0.86 + . transcript_id "g98.t1"; gene_id "g98"; --- 4098 ---- ! chrI AUGUSTUS 5'-UTR 630580 630623 0.78 + . transcript_id "g98.t1"; gene_id "g98"; *************** *** 4101,4104 **** ! chrI AUGUSTUS internal 631039 631163 1 + 2 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS internal 631209 631426 0.78 + 0 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS internal 632041 632105 0.25 + 1 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS internal 632429 632514 0.37 + 2 transcript_id "g98.t1"; gene_id "g98"; --- 4101,4104 ---- ! chrI AUGUSTUS internal 631039 631163 0.99 + 2 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS internal 631209 631426 0.77 + 0 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS internal 632041 632105 0.21 + 1 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS internal 632429 632514 0.43 + 2 transcript_id "g98.t1"; gene_id "g98"; *************** *** 4106 **** ! chrI AUGUSTUS internal 633686 633967 1 + 1 transcript_id "g98.t1"; gene_id "g98"; --- 4106 ---- ! chrI AUGUSTUS internal 633686 633967 0.99 + 1 transcript_id "g98.t1"; gene_id "g98"; *************** *** 4110 **** ! chrI AUGUSTUS terminal 637189 637417 0.27 + 1 transcript_id "g98.t1"; gene_id "g98"; --- 4110 ---- ! chrI AUGUSTUS terminal 637189 637417 0.33 + 1 transcript_id "g98.t1"; gene_id "g98"; *************** *** 4112,4115 **** ! chrI AUGUSTUS intron 631164 631208 1 + . transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS intron 631427 632040 0.29 + . transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS intron 632106 632428 0.17 + . transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS intron 632515 632969 0.78 + . transcript_id "g98.t1"; gene_id "g98"; --- 4112,4115 ---- ! chrI AUGUSTUS intron 631164 631208 0.99 + . transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS intron 631427 632040 0.23 + . transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS intron 632106 632428 0.16 + . transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS intron 632515 632969 0.83 + . transcript_id "g98.t1"; gene_id "g98"; *************** *** 4117 **** ! chrI AUGUSTUS intron 633968 634338 1 + . transcript_id "g98.t1"; gene_id "g98"; --- 4117 ---- ! chrI AUGUSTUS intron 633968 634338 0.99 + . transcript_id "g98.t1"; gene_id "g98"; *************** *** 4122,4125 **** ! chrI AUGUSTUS CDS 631039 631163 1 + 2 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS CDS 631209 631426 0.78 + 0 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS CDS 632041 632105 0.25 + 1 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS CDS 632429 632514 0.37 + 2 transcript_id "g98.t1"; gene_id "g98"; --- 4122,4125 ---- ! chrI AUGUSTUS CDS 631039 631163 0.99 + 2 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS CDS 631209 631426 0.77 + 0 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS CDS 632041 632105 0.21 + 1 transcript_id "g98.t1"; gene_id "g98"; ! chrI AUGUSTUS CDS 632429 632514 0.43 + 2 transcript_id "g98.t1"; gene_id "g98"; *************** *** 4127 **** ! chrI AUGUSTUS CDS 633686 633967 1 + 1 transcript_id "g98.t1"; gene_id "g98"; --- 4127 ---- ! chrI AUGUSTUS CDS 633686 633967 0.99 + 1 transcript_id "g98.t1"; gene_id "g98"; *************** *** 4131 **** ! chrI AUGUSTUS CDS 637189 637417 0.27 + 1 transcript_id "g98.t1"; gene_id "g98"; --- 4131 ---- ! chrI AUGUSTUS CDS 637189 637417 0.33 + 1 transcript_id "g98.t1"; gene_id "g98"; *************** *** 4133 **** ! chrI AUGUSTUS 3'-UTR 637418 637456 0.21 + . transcript_id "g98.t1"; gene_id "g98"; --- 4133 ---- ! chrI AUGUSTUS 3'-UTR 637418 637456 0.25 + . transcript_id "g98.t1"; gene_id "g98"; *************** *** 4153,4154 **** ! chrI AUGUSTUS gene 642710 643779 0.54 + . g99 ! chrI AUGUSTUS transcript 642710 643779 0.54 + . g99.t1 --- 4153,4154 ---- ! chrI AUGUSTUS gene 642710 643779 0.5 + . g99 ! chrI AUGUSTUS transcript 642710 643779 0.5 + . g99.t1 *************** *** 4156 **** ! chrI AUGUSTUS 5'-UTR 642710 642740 0.57 + . transcript_id "g99.t1"; gene_id "g99"; --- 4156 ---- ! chrI AUGUSTUS 5'-UTR 642710 642740 0.54 + . transcript_id "g99.t1"; gene_id "g99"; *************** *** 4161 **** ! chrI AUGUSTUS internal 643129 643314 0.99 + 0 transcript_id "g99.t1"; gene_id "g99"; --- 4161 ---- ! chrI AUGUSTUS internal 643129 643314 0.98 + 0 transcript_id "g99.t1"; gene_id "g99"; *************** *** 4170 **** ! chrI AUGUSTUS CDS 643129 643314 0.99 + 0 transcript_id "g99.t1"; gene_id "g99"; --- 4170 ---- ! chrI AUGUSTUS CDS 643129 643314 0.98 + 0 transcript_id "g99.t1"; gene_id "g99"; *************** *** 4173 **** ! chrI AUGUSTUS 3'-UTR 643705 643779 0.96 + . transcript_id "g99.t1"; gene_id "g99"; --- 4173 ---- ! chrI AUGUSTUS 3'-UTR 643705 643779 0.93 + . transcript_id "g99.t1"; gene_id "g99"; *************** *** 4189,4190 **** ! chrI AUGUSTUS gene 645270 648079 0.62 - . g100 ! chrI AUGUSTUS transcript 645270 648079 0.62 - . g100.t1 --- 4189,4190 ---- ! chrI AUGUSTUS gene 645270 648079 0.5 - . g100 ! chrI AUGUSTUS transcript 645270 648079 0.5 - . g100.t1 *************** *** 4206 **** ! chrI AUGUSTUS 5'-UTR 648040 648079 0.64 - . transcript_id "g100.t1"; gene_id "g100"; --- 4206 ---- ! chrI AUGUSTUS 5'-UTR 648040 648079 0.52 - . transcript_id "g100.t1"; gene_id "g100"; *************** *** 4224,4225 **** ! chrI AUGUSTUS gene 650656 656119 0.06 - . g101 ! chrI AUGUSTUS transcript 650656 656119 0.06 - . g101.t1 --- 4224,4225 ---- ! chrI AUGUSTUS gene 650656 656119 0.05 - . g101 ! chrI AUGUSTUS transcript 650656 656119 0.05 - . g101.t1 *************** *** 4227 **** ! chrI AUGUSTUS 3'-UTR 650656 650737 0.66 - . transcript_id "g101.t1"; gene_id "g101"; --- 4227 ---- ! chrI AUGUSTUS 3'-UTR 650656 650737 0.5 - . transcript_id "g101.t1"; gene_id "g101"; *************** *** 4229,4232 **** ! chrI AUGUSTUS terminal 650738 650814 0.83 - 2 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS internal 650861 650987 0.64 - 0 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS internal 651187 651448 0.74 - 1 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS internal 651492 651622 0.14 - 0 transcript_id "g101.t1"; gene_id "g101"; --- 4229,4232 ---- ! chrI AUGUSTUS terminal 650738 650814 0.78 - 2 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS internal 650861 650987 0.63 - 0 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS internal 651187 651448 0.73 - 1 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS internal 651492 651622 0.12 - 0 transcript_id "g101.t1"; gene_id "g101"; *************** *** 4234,4241 **** ! chrI AUGUSTUS intron 650815 650860 0.83 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS intron 650988 651186 0.63 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS intron 651449 651491 0.96 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS intron 651623 656054 0.08 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 650738 650814 0.83 - 2 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 650861 650987 0.64 - 0 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 651187 651448 0.74 - 1 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 651492 651622 0.14 - 0 transcript_id "g101.t1"; gene_id "g101"; --- 4234,4241 ---- ! chrI AUGUSTUS intron 650815 650860 0.77 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS intron 650988 651186 0.62 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS intron 651449 651491 0.91 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS intron 651623 656054 0.11 - . transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 650738 650814 0.78 - 2 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 650861 650987 0.63 - 0 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 651187 651448 0.73 - 1 transcript_id "g101.t1"; gene_id "g101"; ! chrI AUGUSTUS CDS 651492 651622 0.12 - 0 transcript_id "g101.t1"; gene_id "g101"; *************** *** 4244 **** ! chrI AUGUSTUS 5'-UTR 656082 656119 0.13 - . transcript_id "g101.t1"; gene_id "g101"; --- 4244 ---- ! chrI AUGUSTUS 5'-UTR 656082 656119 0.12 - . transcript_id "g101.t1"; gene_id "g101"; *************** *** 4264 **** ! chrI AUGUSTUS 5'-UTR 663120 663176 0.31 + . transcript_id "g102.t1"; gene_id "g102"; --- 4264 ---- ! chrI AUGUSTUS 5'-UTR 663120 663176 0.26 + . transcript_id "g102.t1"; gene_id "g102"; *************** *** 4266,4273 **** ! chrI AUGUSTUS initial 663177 663199 0.3 + 0 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS internal 663718 663827 0.23 + 1 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS terminal 664931 665010 0.4 + 2 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS intron 663200 663717 0.23 + . transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS intron 663828 664930 0.22 + . transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS CDS 663177 663199 0.3 + 0 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS CDS 663718 663827 0.23 + 1 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS CDS 664931 665010 0.4 + 2 transcript_id "g102.t1"; gene_id "g102"; --- 4266,4273 ---- ! chrI AUGUSTUS initial 663177 663199 0.28 + 0 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS internal 663718 663827 0.26 + 1 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS terminal 664931 665010 0.35 + 2 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS intron 663200 663717 0.26 + . transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS intron 663828 664930 0.26 + . transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS CDS 663177 663199 0.28 + 0 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS CDS 663718 663827 0.26 + 1 transcript_id "g102.t1"; gene_id "g102"; ! chrI AUGUSTUS CDS 664931 665010 0.35 + 2 transcript_id "g102.t1"; gene_id "g102"; *************** *** 4275 **** ! chrI AUGUSTUS 3'-UTR 665011 665263 0.8 + . transcript_id "g102.t1"; gene_id "g102"; --- 4275 ---- ! chrI AUGUSTUS 3'-UTR 665011 665263 0.72 + . transcript_id "g102.t1"; gene_id "g102"; *************** *** 4291,4292 **** ! chrI AUGUSTUS gene 668040 672438 0.07 + . g103 ! chrI AUGUSTUS transcript 668040 672438 0.07 + . g103.t1 --- 4291,4292 ---- ! chrI AUGUSTUS gene 668040 672438 0.15 + . g103 ! chrI AUGUSTUS transcript 668040 672438 0.15 + . g103.t1 *************** *** 4294 **** ! chrI AUGUSTUS 5'-UTR 668040 668168 0.4 + . transcript_id "g103.t1"; gene_id "g103"; --- 4294 ---- ! chrI AUGUSTUS 5'-UTR 668040 668168 0.47 + . transcript_id "g103.t1"; gene_id "g103"; *************** *** 4296 **** ! chrI AUGUSTUS initial 668169 668260 0.96 + 0 transcript_id "g103.t1"; gene_id "g103"; --- 4296 ---- ! chrI AUGUSTUS initial 668169 668260 0.97 + 0 transcript_id "g103.t1"; gene_id "g103"; *************** *** 4299 **** ! chrI AUGUSTUS internal 669632 669748 0.77 + 0 transcript_id "g103.t1"; gene_id "g103"; --- 4299 ---- ! chrI AUGUSTUS internal 669632 669748 0.76 + 0 transcript_id "g103.t1"; gene_id "g103"; *************** *** 4304 **** ! chrI AUGUSTUS intron 668261 668408 0.99 + . transcript_id "g103.t1"; gene_id "g103"; --- 4304 ---- ! chrI AUGUSTUS intron 668261 668408 0.98 + . transcript_id "g103.t1"; gene_id "g103"; *************** *** 4306 **** ! chrI AUGUSTUS intron 669213 669631 0.99 + . transcript_id "g103.t1"; gene_id "g103"; --- 4306 ---- ! chrI AUGUSTUS intron 669213 669631 0.97 + . transcript_id "g103.t1"; gene_id "g103"; *************** *** 4311 **** ! chrI AUGUSTUS CDS 668169 668260 0.96 + 0 transcript_id "g103.t1"; gene_id "g103"; --- 4311 ---- ! chrI AUGUSTUS CDS 668169 668260 0.97 + 0 transcript_id "g103.t1"; gene_id "g103"; *************** *** 4314 **** ! chrI AUGUSTUS CDS 669632 669748 0.77 + 0 transcript_id "g103.t1"; gene_id "g103"; --- 4314 ---- ! chrI AUGUSTUS CDS 669632 669748 0.76 + 0 transcript_id "g103.t1"; gene_id "g103"; *************** *** 4320 **** ! chrI AUGUSTUS 3'-UTR 672013 672438 0.43 + . transcript_id "g103.t1"; gene_id "g103"; --- 4320 ---- ! chrI AUGUSTUS 3'-UTR 672013 672438 0.41 + . transcript_id "g103.t1"; gene_id "g103"; *************** *** 4339,4340 **** ! chrI AUGUSTUS gene 672943 682759 0.1 - . g104 ! chrI AUGUSTUS transcript 672943 682759 0.1 - . g104.t1 --- 4339,4340 ---- ! chrI AUGUSTUS gene 672943 682759 0.15 - . g104 ! chrI AUGUSTUS transcript 672943 682759 0.15 - . g104.t1 *************** *** 4342 **** ! chrI AUGUSTUS 3'-UTR 672943 673245 0.75 - . transcript_id "g104.t1"; gene_id "g104"; --- 4342 ---- ! chrI AUGUSTUS 3'-UTR 672943 673245 0.73 - . transcript_id "g104.t1"; gene_id "g104"; *************** *** 4346 **** ! chrI AUGUSTUS internal 674644 674887 0.95 - 0 transcript_id "g104.t1"; gene_id "g104"; --- 4346 ---- ! chrI AUGUSTUS internal 674644 674887 0.99 - 0 transcript_id "g104.t1"; gene_id "g104"; *************** *** 4352,4354 **** ! chrI AUGUSTUS internal 679802 679891 0.94 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS internal 680556 680666 0.9 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS initial 682535 682729 0.81 - 0 transcript_id "g104.t1"; gene_id "g104"; --- 4352,4354 ---- ! chrI AUGUSTUS internal 679802 679891 0.97 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS internal 680556 680666 0.91 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS initial 682535 682729 0.92 - 0 transcript_id "g104.t1"; gene_id "g104"; *************** *** 4356 **** ! chrI AUGUSTUS intron 674466 674643 0.95 - . transcript_id "g104.t1"; gene_id "g104"; --- 4356 ---- ! chrI AUGUSTUS intron 674466 674643 0.99 - . transcript_id "g104.t1"; gene_id "g104"; *************** *** 4362,4364 **** ! chrI AUGUSTUS intron 679330 679801 0.87 - . transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS intron 679892 680555 0.86 - . transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS intron 680667 682534 0.96 - . transcript_id "g104.t1"; gene_id "g104"; --- 4362,4364 ---- ! chrI AUGUSTUS intron 679330 679801 0.83 - . transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS intron 679892 680555 0.91 - . transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS intron 680667 682534 0.99 - . transcript_id "g104.t1"; gene_id "g104"; *************** *** 4367 **** ! chrI AUGUSTUS CDS 674644 674887 0.95 - 0 transcript_id "g104.t1"; gene_id "g104"; --- 4367 ---- ! chrI AUGUSTUS CDS 674644 674887 0.99 - 0 transcript_id "g104.t1"; gene_id "g104"; *************** *** 4373,4375 **** ! chrI AUGUSTUS CDS 679802 679891 0.94 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS CDS 680556 680666 0.9 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS CDS 682535 682729 0.81 - 0 transcript_id "g104.t1"; gene_id "g104"; --- 4373,4375 ---- ! chrI AUGUSTUS CDS 679802 679891 0.97 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS CDS 680556 680666 0.91 - 0 transcript_id "g104.t1"; gene_id "g104"; ! chrI AUGUSTUS CDS 682535 682729 0.92 - 0 transcript_id "g104.t1"; gene_id "g104"; *************** *** 4377 **** ! chrI AUGUSTUS 5'-UTR 682730 682759 0.24 - . transcript_id "g104.t1"; gene_id "g104"; --- 4377 ---- ! chrI AUGUSTUS 5'-UTR 682730 682759 0.33 - . transcript_id "g104.t1"; gene_id "g104"; *************** *** 4400,4401 **** ! chrI AUGUSTUS gene 686642 689467 0.37 - . g105 ! chrI AUGUSTUS transcript 686642 689467 0.37 - . g105.t1 --- 4400,4401 ---- ! chrI AUGUSTUS gene 686642 689467 0.29 - . g105 ! chrI AUGUSTUS transcript 686642 689467 0.29 - . g105.t1 *************** *** 4403 **** ! chrI AUGUSTUS 3'-UTR 686642 686698 1 - . transcript_id "g105.t1"; gene_id "g105"; --- 4403 ---- ! chrI AUGUSTUS 3'-UTR 686642 686698 0.95 - . transcript_id "g105.t1"; gene_id "g105"; *************** *** 4407 **** ! chrI AUGUSTUS internal 687951 687974 0.64 - 2 transcript_id "g105.t1"; gene_id "g105"; --- 4407 ---- ! chrI AUGUSTUS internal 687951 687974 0.67 - 2 transcript_id "g105.t1"; gene_id "g105"; *************** *** 4411,4412 **** ! chrI AUGUSTUS intron 687895 687950 0.64 - . transcript_id "g105.t1"; gene_id "g105"; ! chrI AUGUSTUS intron 687975 689086 0.64 - . transcript_id "g105.t1"; gene_id "g105"; --- 4411,4412 ---- ! chrI AUGUSTUS intron 687895 687950 0.67 - . transcript_id "g105.t1"; gene_id "g105"; ! chrI AUGUSTUS intron 687975 689086 0.67 - . transcript_id "g105.t1"; gene_id "g105"; *************** *** 4416 **** ! chrI AUGUSTUS CDS 687951 687974 0.64 - 2 transcript_id "g105.t1"; gene_id "g105"; --- 4416 ---- ! chrI AUGUSTUS CDS 687951 687974 0.67 - 2 transcript_id "g105.t1"; gene_id "g105"; *************** *** 4420 **** ! chrI AUGUSTUS 5'-UTR 689417 689467 0.54 - . transcript_id "g105.t1"; gene_id "g105"; --- 4420 ---- ! chrI AUGUSTUS 5'-UTR 689417 689467 0.45 - . transcript_id "g105.t1"; gene_id "g105"; *************** *** 4438,4439 **** ! chrI AUGUSTUS gene 692078 692518 0.63 + . g106 ! chrI AUGUSTUS transcript 692078 692518 0.63 + . g106.t1 --- 4438,4439 ---- ! chrI AUGUSTUS gene 692078 692518 0.68 + . g106 ! chrI AUGUSTUS transcript 692078 692518 0.68 + . g106.t1 *************** *** 4441 **** ! chrI AUGUSTUS 5'-UTR 692078 692109 0.96 + . transcript_id "g106.t1"; gene_id "g106"; --- 4441 ---- ! chrI AUGUSTUS 5'-UTR 692078 692109 0.98 + . transcript_id "g106.t1"; gene_id "g106"; *************** *** 4446 **** ! chrI AUGUSTUS 3'-UTR 692401 692518 0.66 + . transcript_id "g106.t1"; gene_id "g106"; --- 4446 ---- ! chrI AUGUSTUS 3'-UTR 692401 692518 0.69 + . transcript_id "g106.t1"; gene_id "g106"; *************** *** 4461,4462 **** ! chrI AUGUSTUS gene 692578 694218 0.11 + . g107 ! chrI AUGUSTUS transcript 692578 694218 0.11 + . g107.t1 --- 4461,4462 ---- ! chrI AUGUSTUS gene 692578 694218 0.16 + . g107 ! chrI AUGUSTUS transcript 692578 694218 0.16 + . g107.t1 *************** *** 4464 **** ! chrI AUGUSTUS 5'-UTR 692578 692757 0.29 + . transcript_id "g107.t1"; gene_id "g107"; --- 4464 ---- ! chrI AUGUSTUS 5'-UTR 692578 692757 0.37 + . transcript_id "g107.t1"; gene_id "g107"; *************** *** 4466 **** ! chrI AUGUSTUS initial 692758 692825 0.99 + 0 transcript_id "g107.t1"; gene_id "g107"; --- 4466 ---- ! chrI AUGUSTUS initial 692758 692825 0.98 + 0 transcript_id "g107.t1"; gene_id "g107"; *************** *** 4468,4470 **** ! chrI AUGUSTUS internal 693043 693129 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS internal 693176 693292 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS internal 693353 693642 0.87 + 0 transcript_id "g107.t1"; gene_id "g107"; --- 4468,4470 ---- ! chrI AUGUSTUS internal 693043 693129 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS internal 693176 693292 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS internal 693353 693642 0.8 + 0 transcript_id "g107.t1"; gene_id "g107"; *************** *** 4474 **** ! chrI AUGUSTUS intron 693130 693175 0.67 + . transcript_id "g107.t1"; gene_id "g107"; --- 4474 ---- ! chrI AUGUSTUS intron 693130 693175 0.69 + . transcript_id "g107.t1"; gene_id "g107"; *************** *** 4476,4477 **** ! chrI AUGUSTUS intron 693643 693727 0.86 + . transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS CDS 692758 692825 0.99 + 0 transcript_id "g107.t1"; gene_id "g107"; --- 4476,4477 ---- ! chrI AUGUSTUS intron 693643 693727 0.79 + . transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS CDS 692758 692825 0.98 + 0 transcript_id "g107.t1"; gene_id "g107"; *************** *** 4479,4481 **** ! chrI AUGUSTUS CDS 693043 693129 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS CDS 693176 693292 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS CDS 693353 693642 0.87 + 0 transcript_id "g107.t1"; gene_id "g107"; --- 4479,4481 ---- ! chrI AUGUSTUS CDS 693043 693129 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS CDS 693176 693292 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; ! chrI AUGUSTUS CDS 693353 693642 0.8 + 0 transcript_id "g107.t1"; gene_id "g107"; *************** *** 4484 **** ! chrI AUGUSTUS 3'-UTR 694086 694218 0.8 + . transcript_id "g107.t1"; gene_id "g107"; --- 4484 ---- ! chrI AUGUSTUS 3'-UTR 694086 694218 0.68 + . transcript_id "g107.t1"; gene_id "g107"; *************** *** 4502,4503 **** ! chrI AUGUSTUS gene 697278 699999 0.52 + . g108 ! chrI AUGUSTUS transcript 697278 699999 0.52 + . g108.t1 --- 4502,4503 ---- ! chrI AUGUSTUS gene 697278 699999 0.54 + . g108 ! chrI AUGUSTUS transcript 697278 699999 0.54 + . g108.t1 *************** *** 4505 **** ! chrI AUGUSTUS 5'-UTR 697278 697440 0.83 + . transcript_id "g108.t1"; gene_id "g108"; --- 4505 ---- ! chrI AUGUSTUS 5'-UTR 697278 697440 0.72 + . transcript_id "g108.t1"; gene_id "g108"; *************** *** 4508,4511 **** ! chrI AUGUSTUS internal 697626 697681 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS internal 698042 698330 0.85 + 1 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS internal 698835 698928 1 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS internal 698977 699088 1 + 2 transcript_id "g108.t1"; gene_id "g108"; --- 4508,4511 ---- ! chrI AUGUSTUS internal 697626 697681 1 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS internal 698042 698330 0.89 + 1 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS internal 698835 698928 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS internal 698977 699088 0.98 + 2 transcript_id "g108.t1"; gene_id "g108"; *************** *** 4513 **** ! chrI AUGUSTUS terminal 699813 699956 0.93 + 0 transcript_id "g108.t1"; gene_id "g108"; --- 4513 ---- ! chrI AUGUSTUS terminal 699813 699956 0.92 + 0 transcript_id "g108.t1"; gene_id "g108"; *************** *** 4515 **** ! chrI AUGUSTUS intron 697682 698041 0.84 + . transcript_id "g108.t1"; gene_id "g108"; --- 4515 ---- ! chrI AUGUSTUS intron 697682 698041 0.89 + . transcript_id "g108.t1"; gene_id "g108"; *************** *** 4517,4519 **** ! chrI AUGUSTUS intron 698929 698976 1 + . transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS intron 699089 699551 1 + . transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS intron 699760 699812 0.99 + . transcript_id "g108.t1"; gene_id "g108"; --- 4517,4519 ---- ! chrI AUGUSTUS intron 698929 698976 0.98 + . transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS intron 699089 699551 0.99 + . transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS intron 699760 699812 1 + . transcript_id "g108.t1"; gene_id "g108"; *************** *** 4521,4524 **** ! chrI AUGUSTUS CDS 697626 697681 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS CDS 698042 698330 0.85 + 1 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS CDS 698835 698928 1 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS CDS 698977 699088 1 + 2 transcript_id "g108.t1"; gene_id "g108"; --- 4521,4524 ---- ! chrI AUGUSTUS CDS 697626 697681 1 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS CDS 698042 698330 0.89 + 1 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS CDS 698835 698928 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; ! chrI AUGUSTUS CDS 698977 699088 0.98 + 2 transcript_id "g108.t1"; gene_id "g108"; *************** *** 4526 **** ! chrI AUGUSTUS CDS 699813 699956 0.93 + 0 transcript_id "g108.t1"; gene_id "g108"; --- 4526 ---- ! chrI AUGUSTUS CDS 699813 699956 0.92 + 0 transcript_id "g108.t1"; gene_id "g108"; *************** *** 4528 **** ! chrI AUGUSTUS 3'-UTR 699957 699999 0.74 + . transcript_id "g108.t1"; gene_id "g108"; --- 4528 ---- ! chrI AUGUSTUS 3'-UTR 699957 699999 0.83 + . transcript_id "g108.t1"; gene_id "g108"; *************** *** 4546,4547 **** ! chrI AUGUSTUS gene 700408 702212 0.21 + . g109 ! chrI AUGUSTUS transcript 700408 702212 0.21 + . g109.t1 --- 4546,4547 ---- ! chrI AUGUSTUS gene 700408 702212 0.24 + . g109 ! chrI AUGUSTUS transcript 700408 702212 0.24 + . g109.t1 *************** *** 4549 **** ! chrI AUGUSTUS 5'-UTR 700408 700504 0.52 + . transcript_id "g109.t1"; gene_id "g109"; --- 4549 ---- ! chrI AUGUSTUS 5'-UTR 700408 700504 0.53 + . transcript_id "g109.t1"; gene_id "g109"; *************** *** 4551,4553 **** ! chrI AUGUSTUS initial 700505 700603 0.83 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS internal 700885 701682 0.69 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS internal 701731 701943 0.73 + 0 transcript_id "g109.t1"; gene_id "g109"; --- 4551,4553 ---- ! chrI AUGUSTUS initial 700505 700603 0.84 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS internal 700885 701682 0.77 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS internal 701731 701943 0.81 + 0 transcript_id "g109.t1"; gene_id "g109"; *************** *** 4555,4556 **** ! chrI AUGUSTUS intron 700604 700884 0.94 + . transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS intron 701683 701730 0.73 + . transcript_id "g109.t1"; gene_id "g109"; --- 4555,4556 ---- ! chrI AUGUSTUS intron 700604 700884 0.93 + . transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS intron 701683 701730 0.81 + . transcript_id "g109.t1"; gene_id "g109"; *************** *** 4558,4560 **** ! chrI AUGUSTUS CDS 700505 700603 0.83 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS CDS 700885 701682 0.69 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS CDS 701731 701943 0.73 + 0 transcript_id "g109.t1"; gene_id "g109"; --- 4558,4560 ---- ! chrI AUGUSTUS CDS 700505 700603 0.84 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS CDS 700885 701682 0.77 + 0 transcript_id "g109.t1"; gene_id "g109"; ! chrI AUGUSTUS CDS 701731 701943 0.81 + 0 transcript_id "g109.t1"; gene_id "g109"; *************** *** 4563 **** ! chrI AUGUSTUS 3'-UTR 702084 702212 0.54 + . transcript_id "g109.t1"; gene_id "g109"; --- 4563 ---- ! chrI AUGUSTUS 3'-UTR 702084 702212 0.59 + . transcript_id "g109.t1"; gene_id "g109"; *************** *** 4581,4582 **** ! chrI AUGUSTUS gene 707228 717547 0.26 + . g110 ! chrI AUGUSTUS transcript 707228 717547 0.26 + . g110.t1 --- 4581,4582 ---- ! chrI AUGUSTUS gene 707228 717547 0.18 + . g110 ! chrI AUGUSTUS transcript 707228 717547 0.18 + . g110.t1 *************** *** 4586,4591 **** ! chrI AUGUSTUS initial 707348 707404 0.46 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 708103 708207 0.97 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 709921 710067 0.99 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 711122 711406 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 712440 712549 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 713852 714073 1 + 1 transcript_id "g110.t1"; gene_id "g110"; --- 4586,4591 ---- ! chrI AUGUSTUS initial 707348 707404 0.44 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 708103 708207 0.95 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 709921 710067 0.98 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 711122 711406 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 712440 712549 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS internal 713852 714073 0.99 + 1 transcript_id "g110.t1"; gene_id "g110"; *************** *** 4593 **** ! chrI AUGUSTUS internal 714729 715055 0.92 + 0 transcript_id "g110.t1"; gene_id "g110"; --- 4593 ---- ! chrI AUGUSTUS internal 714729 715055 0.96 + 0 transcript_id "g110.t1"; gene_id "g110"; *************** *** 4595,4598 **** ! chrI AUGUSTUS intron 707405 708102 0.46 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS intron 708208 709920 1 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS intron 710068 711121 0.93 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS intron 711407 712439 0.82 + . transcript_id "g110.t1"; gene_id "g110"; --- 4595,4598 ---- ! chrI AUGUSTUS intron 707405 708102 0.44 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS intron 708208 709920 0.99 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS intron 710068 711121 0.91 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS intron 711407 712439 0.7 + . transcript_id "g110.t1"; gene_id "g110"; *************** *** 4600 **** ! chrI AUGUSTUS intron 714074 714120 1 + . transcript_id "g110.t1"; gene_id "g110"; --- 4600 ---- ! chrI AUGUSTUS intron 714074 714120 0.99 + . transcript_id "g110.t1"; gene_id "g110"; *************** *** 4602,4608 **** ! chrI AUGUSTUS intron 715056 717230 0.95 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 707348 707404 0.46 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 708103 708207 0.97 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 709921 710067 0.99 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 711122 711406 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 712440 712549 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 713852 714073 1 + 1 transcript_id "g110.t1"; gene_id "g110"; --- 4602,4608 ---- ! chrI AUGUSTUS intron 715056 717230 0.94 + . transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 707348 707404 0.44 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 708103 708207 0.95 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 709921 710067 0.98 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 711122 711406 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 712440 712549 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; ! chrI AUGUSTUS CDS 713852 714073 0.99 + 1 transcript_id "g110.t1"; gene_id "g110"; *************** *** 4610 **** ! chrI AUGUSTUS CDS 714729 715055 0.92 + 0 transcript_id "g110.t1"; gene_id "g110"; --- 4610 ---- ! chrI AUGUSTUS CDS 714729 715055 0.96 + 0 transcript_id "g110.t1"; gene_id "g110"; *************** *** 4613 **** ! chrI AUGUSTUS 3'-UTR 717357 717547 0.93 + . transcript_id "g110.t1"; gene_id "g110"; --- 4613 ---- ! chrI AUGUSTUS 3'-UTR 717357 717547 0.88 + . transcript_id "g110.t1"; gene_id "g110"; *************** *** 4633,4634 **** ! chrI AUGUSTUS gene 718026 726827 0.12 - . g111 ! chrI AUGUSTUS transcript 718026 726827 0.12 - . g111.t1 --- 4633,4634 ---- ! chrI AUGUSTUS gene 718026 726827 0.13 - . g111 ! chrI AUGUSTUS transcript 718026 726827 0.13 - . g111.t1 *************** *** 4636 **** ! chrI AUGUSTUS 3'-UTR 718026 718128 0.27 - . transcript_id "g111.t1"; gene_id "g111"; --- 4636 ---- ! chrI AUGUSTUS 3'-UTR 718026 718128 0.31 - . transcript_id "g111.t1"; gene_id "g111"; *************** *** 4639 **** ! chrI AUGUSTUS internal 719105 719268 0.94 - 0 transcript_id "g111.t1"; gene_id "g111"; --- 4639 ---- ! chrI AUGUSTUS internal 719105 719268 0.95 - 0 transcript_id "g111.t1"; gene_id "g111"; *************** *** 4645,4646 **** ! chrI AUGUSTUS internal 725987 726071 0.88 - 2 transcript_id "g111.t1"; gene_id "g111"; ! chrI AUGUSTUS internal 726140 726267 0.98 - 1 transcript_id "g111.t1"; gene_id "g111"; --- 4645,4646 ---- ! chrI AUGUSTUS internal 725987 726071 0.9 - 2 transcript_id "g111.t1"; gene_id "g111"; ! chrI AUGUSTUS internal 726140 726267 1 - 1 transcript_id "g111.t1"; gene_id "g111"; *************** *** 4649,4650 **** ! chrI AUGUSTUS intron 718331 719104 1 - . transcript_id "g111.t1"; gene_id "g111"; ! chrI AUGUSTUS intron 719269 720670 0.93 - . transcript_id "g111.t1"; gene_id "g111"; --- 4649,4650 ---- ! chrI AUGUSTUS intron 718331 719104 0.99 - . transcript_id "g111.t1"; gene_id "g111"; ! chrI AUGUSTUS intron 719269 720670 0.96 - . transcript_id "g111.t1"; gene_id "g111"; *************** *** 4654 **** ! chrI AUGUSTUS intron 725403 725758 0.99 - . transcript_id "g111.t1"; gene_id "g111"; --- 4654 ---- ! chrI AUGUSTUS intron 725403 725758 1 - . transcript_id "g111.t1"; gene_id "g111"; *************** *** 4656 **** ! chrI AUGUSTUS intron 726072 726139 0.86 - . transcript_id "g111.t1"; gene_id "g111"; --- 4656 ---- ! chrI AUGUSTUS intron 726072 726139 0.9 - . transcript_id "g111.t1"; gene_id "g111"; *************** *** 4660 **** ! chrI AUGUSTUS CDS 719105 719268 0.94 - 0 transcript_id "g111.t1"; gene_id "g111"; --- 4660 ---- ! chrI AUGUSTUS CDS 719105 719268 0.95 - 0 transcript_id "g111.t1"; gene_id "g111"; *************** *** 4666,4667 **** ! chrI AUGUSTUS CDS 725987 726071 0.88 - 2 transcript_id "g111.t1"; gene_id "g111"; ! chrI AUGUSTUS CDS 726140 726267 0.98 - 1 transcript_id "g111.t1"; gene_id "g111"; --- 4666,4667 ---- ! chrI AUGUSTUS CDS 725987 726071 0.9 - 2 transcript_id "g111.t1"; gene_id "g111"; ! chrI AUGUSTUS CDS 726140 726267 1 - 1 transcript_id "g111.t1"; gene_id "g111"; *************** *** 4671 **** ! chrI AUGUSTUS 5'-UTR 726653 726827 0.35 - . transcript_id "g111.t1"; gene_id "g111"; --- 4671 ---- ! chrI AUGUSTUS 5'-UTR 726653 726827 0.39 - . transcript_id "g111.t1"; gene_id "g111"; *************** *** 4693,4694 **** ! chrI AUGUSTUS gene 726978 727385 0.38 + . g112 ! chrI AUGUSTUS transcript 726978 727385 0.38 + . g112.t1 --- 4693,4694 ---- ! chrI AUGUSTUS gene 726978 727385 0.3 + . g112 ! chrI AUGUSTUS transcript 726978 727385 0.3 + . g112.t1 *************** *** 4696 **** ! chrI AUGUSTUS 5'-UTR 726978 727018 0.58 + . transcript_id "g112.t1"; gene_id "g112"; --- 4696 ---- ! chrI AUGUSTUS 5'-UTR 726978 727018 0.44 + . transcript_id "g112.t1"; gene_id "g112"; *************** *** 4704 **** ! chrI AUGUSTUS 3'-UTR 727306 727385 0.65 + . transcript_id "g112.t1"; gene_id "g112"; --- 4704 ---- ! chrI AUGUSTUS 3'-UTR 727306 727385 0.62 + . transcript_id "g112.t1"; gene_id "g112"; *************** *** 4718,4719 **** ! chrI AUGUSTUS gene 729958 731454 0.66 + . g113 ! chrI AUGUSTUS transcript 729958 731454 0.66 + . g113.t1 --- 4718,4719 ---- ! chrI AUGUSTUS gene 729958 731454 0.64 + . g113 ! chrI AUGUSTUS transcript 729958 731454 0.64 + . g113.t1 *************** *** 4721 **** ! chrI AUGUSTUS 5'-UTR 729958 730010 0.69 + . transcript_id "g113.t1"; gene_id "g113"; --- 4721 ---- ! chrI AUGUSTUS 5'-UTR 729958 730010 0.67 + . transcript_id "g113.t1"; gene_id "g113"; *************** *** 4745,4746 **** ! chrI AUGUSTUS gene 731538 735342 0.31 + . g114 ! chrI AUGUSTUS transcript 731538 735342 0.31 + . g114.t1 --- 4745,4746 ---- ! chrI AUGUSTUS gene 731538 735342 0.27 + . g114 ! chrI AUGUSTUS transcript 731538 735342 0.27 + . g114.t1 *************** *** 4748 **** ! chrI AUGUSTUS 5'-UTR 731538 731564 0.53 + . transcript_id "g114.t1"; gene_id "g114"; --- 4748 ---- ! chrI AUGUSTUS 5'-UTR 731538 731564 0.58 + . transcript_id "g114.t1"; gene_id "g114"; *************** *** 4759 **** ! chrI AUGUSTUS 3'-UTR 735315 735342 0.5 + . transcript_id "g114.t1"; gene_id "g114"; --- 4759 ---- ! chrI AUGUSTUS 3'-UTR 735315 735342 0.48 + . transcript_id "g114.t1"; gene_id "g114"; *************** *** 4780 **** ! chrI AUGUSTUS 3'-UTR 735347 735546 0.49 - . transcript_id "g115.t1"; gene_id "g115"; --- 4780 ---- ! chrI AUGUSTUS 3'-UTR 735347 735546 0.46 - . transcript_id "g115.t1"; gene_id "g115"; *************** *** 4783,4784 **** ! chrI AUGUSTUS internal 737442 737735 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; ! chrI AUGUSTUS internal 738019 738264 1 - 0 transcript_id "g115.t1"; gene_id "g115"; --- 4783,4784 ---- ! chrI AUGUSTUS internal 737442 737735 1 - 0 transcript_id "g115.t1"; gene_id "g115"; ! chrI AUGUSTUS internal 738019 738264 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; *************** *** 4786 **** ! chrI AUGUSTUS initial 739591 739612 0.32 - 0 transcript_id "g115.t1"; gene_id "g115"; --- 4786 ---- ! chrI AUGUSTUS initial 739591 739612 0.4 - 0 transcript_id "g115.t1"; gene_id "g115"; *************** *** 4789,4790 **** ! chrI AUGUSTUS intron 738265 738491 1 - . transcript_id "g115.t1"; gene_id "g115"; ! chrI AUGUSTUS intron 738644 739590 0.61 - . transcript_id "g115.t1"; gene_id "g115"; --- 4789,4790 ---- ! chrI AUGUSTUS intron 738265 738491 0.99 - . transcript_id "g115.t1"; gene_id "g115"; ! chrI AUGUSTUS intron 738644 739590 0.72 - . transcript_id "g115.t1"; gene_id "g115"; *************** *** 4792,4793 **** ! chrI AUGUSTUS CDS 737442 737735 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; ! chrI AUGUSTUS CDS 738019 738264 1 - 0 transcript_id "g115.t1"; gene_id "g115"; --- 4792,4793 ---- ! chrI AUGUSTUS CDS 737442 737735 1 - 0 transcript_id "g115.t1"; gene_id "g115"; ! chrI AUGUSTUS CDS 738019 738264 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; *************** *** 4795 **** ! chrI AUGUSTUS CDS 739591 739612 0.32 - 0 transcript_id "g115.t1"; gene_id "g115"; --- 4795 ---- ! chrI AUGUSTUS CDS 739591 739612 0.4 - 0 transcript_id "g115.t1"; gene_id "g115"; *************** *** 4797 **** ! chrI AUGUSTUS 5'-UTR 739613 739647 0.14 - . transcript_id "g115.t1"; gene_id "g115"; --- 4797 ---- ! chrI AUGUSTUS 5'-UTR 739613 739647 0.22 - . transcript_id "g115.t1"; gene_id "g115"; *************** *** 4818,4819 **** ! chrI AUGUSTUS gene 741279 742867 0.38 - . g116 ! chrI AUGUSTUS transcript 741279 742867 0.38 - . g116.t1 --- 4818,4819 ---- ! chrI AUGUSTUS gene 741279 742867 0.41 - . g116 ! chrI AUGUSTUS transcript 741279 742867 0.41 - . g116.t1 *************** *** 4821 **** ! chrI AUGUSTUS 3'-UTR 741279 741396 0.54 - . transcript_id "g116.t1"; gene_id "g116"; --- 4821 ---- ! chrI AUGUSTUS 3'-UTR 741279 741396 0.66 - . transcript_id "g116.t1"; gene_id "g116"; *************** *** 4823,4830 **** ! chrI AUGUSTUS terminal 741397 741511 0.68 - 1 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS internal 742398 742509 0.67 - 2 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS initial 742558 742738 0.65 - 0 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS intron 741512 742397 0.99 - . transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS intron 742510 742557 0.65 - . transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS CDS 741397 741511 0.68 - 1 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS CDS 742398 742509 0.67 - 2 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS CDS 742558 742738 0.65 - 0 transcript_id "g116.t1"; gene_id "g116"; --- 4823,4830 ---- ! chrI AUGUSTUS terminal 741397 741511 0.74 - 1 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS internal 742398 742509 0.71 - 2 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS initial 742558 742738 0.71 - 0 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS intron 741512 742397 1 - . transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS intron 742510 742557 0.72 - . transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS CDS 741397 741511 0.74 - 1 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS CDS 742398 742509 0.71 - 2 transcript_id "g116.t1"; gene_id "g116"; ! chrI AUGUSTUS CDS 742558 742738 0.71 - 0 transcript_id "g116.t1"; gene_id "g116"; *************** *** 4832 **** ! chrI AUGUSTUS 5'-UTR 742739 742867 0.55 - . transcript_id "g116.t1"; gene_id "g116"; --- 4832 ---- ! chrI AUGUSTUS 5'-UTR 742739 742867 0.49 - . transcript_id "g116.t1"; gene_id "g116"; *************** *** 4851 **** ! chrI AUGUSTUS 3'-UTR 755249 755818 0.73 - . transcript_id "g117.t1"; gene_id "g117"; --- 4851 ---- ! chrI AUGUSTUS 3'-UTR 755249 755818 0.67 - . transcript_id "g117.t1"; gene_id "g117"; *************** *** 4854 **** ! chrI AUGUSTUS internal 756168 756611 1 - 0 transcript_id "g117.t1"; gene_id "g117"; --- 4854 ---- ! chrI AUGUSTUS internal 756168 756611 0.99 - 0 transcript_id "g117.t1"; gene_id "g117"; *************** *** 4856 **** ! chrI AUGUSTUS internal 757385 757497 0.99 - 2 transcript_id "g117.t1"; gene_id "g117"; --- 4856 ---- ! chrI AUGUSTUS internal 757385 757497 1 - 2 transcript_id "g117.t1"; gene_id "g117"; *************** *** 4862,4863 **** ! chrI AUGUSTUS intron 757498 757545 0.99 - . transcript_id "g117.t1"; gene_id "g117"; ! chrI AUGUSTUS intron 757838 757893 1 - . transcript_id "g117.t1"; gene_id "g117"; --- 4862,4863 ---- ! chrI AUGUSTUS intron 757498 757545 1 - . transcript_id "g117.t1"; gene_id "g117"; ! chrI AUGUSTUS intron 757838 757893 0.99 - . transcript_id "g117.t1"; gene_id "g117"; *************** *** 4865 **** ! chrI AUGUSTUS CDS 756168 756611 1 - 0 transcript_id "g117.t1"; gene_id "g117"; --- 4865 ---- ! chrI AUGUSTUS CDS 756168 756611 0.99 - 0 transcript_id "g117.t1"; gene_id "g117"; *************** *** 4867 **** ! chrI AUGUSTUS CDS 757385 757497 0.99 - 2 transcript_id "g117.t1"; gene_id "g117"; --- 4867 ---- ! chrI AUGUSTUS CDS 757385 757497 1 - 2 transcript_id "g117.t1"; gene_id "g117"; *************** *** 4892,4893 **** ! chrI AUGUSTUS gene 759027 760467 0.33 - . g118 ! chrI AUGUSTUS transcript 759027 760467 0.33 - . g118.t1 --- 4892,4893 ---- ! chrI AUGUSTUS gene 759027 760467 0.35 - . g118 ! chrI AUGUSTUS transcript 759027 760467 0.35 - . g118.t1 *************** *** 4895 **** ! chrI AUGUSTUS 3'-UTR 759027 759074 0.86 - . transcript_id "g118.t1"; gene_id "g118"; --- 4895 ---- ! chrI AUGUSTUS 3'-UTR 759027 759074 0.74 - . transcript_id "g118.t1"; gene_id "g118"; *************** *** 4898 **** ! chrI AUGUSTUS internal 759314 759683 1 - 1 transcript_id "g118.t1"; gene_id "g118"; --- 4898 ---- ! chrI AUGUSTUS internal 759314 759683 0.99 - 1 transcript_id "g118.t1"; gene_id "g118"; *************** *** 4901 **** ! chrI AUGUSTUS intron 759246 759313 1 - . transcript_id "g118.t1"; gene_id "g118"; --- 4901 ---- ! chrI AUGUSTUS intron 759246 759313 0.99 - . transcript_id "g118.t1"; gene_id "g118"; *************** *** 4903 **** ! chrI AUGUSTUS intron 759972 760326 0.85 - . transcript_id "g118.t1"; gene_id "g118"; --- 4903 ---- ! chrI AUGUSTUS intron 759972 760326 0.88 - . transcript_id "g118.t1"; gene_id "g118"; *************** *** 4905 **** ! chrI AUGUSTUS CDS 759314 759683 1 - 1 transcript_id "g118.t1"; gene_id "g118"; --- 4905 ---- ! chrI AUGUSTUS CDS 759314 759683 0.99 - 1 transcript_id "g118.t1"; gene_id "g118"; *************** *** 4909 **** ! chrI AUGUSTUS 5'-UTR 760399 760467 0.38 - . transcript_id "g118.t1"; gene_id "g118"; --- 4909 ---- ! chrI AUGUSTUS 5'-UTR 760399 760467 0.47 - . transcript_id "g118.t1"; gene_id "g118"; *************** *** 4927,4928 **** ! chrI AUGUSTUS gene 761007 776097 0.15 - . g119 ! chrI AUGUSTUS transcript 761007 776097 0.15 - . g119.t1 --- 4927,4928 ---- ! chrI AUGUSTUS gene 761007 776097 0.17 - . g119 ! chrI AUGUSTUS transcript 761007 776097 0.17 - . g119.t1 *************** *** 4930 **** ! chrI AUGUSTUS 3'-UTR 761007 761318 0.59 - . transcript_id "g119.t1"; gene_id "g119"; --- 4930 ---- ! chrI AUGUSTUS 3'-UTR 761007 761318 0.53 - . transcript_id "g119.t1"; gene_id "g119"; *************** *** 4932,4933 **** ! chrI AUGUSTUS terminal 761319 761514 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS internal 762148 762393 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; --- 4932,4933 ---- ! chrI AUGUSTUS terminal 761319 761514 1 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS internal 762148 762393 1 - 1 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4938,4939 **** ! chrI AUGUSTUS internal 768649 768872 1 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS internal 769762 769873 1 - 2 transcript_id "g119.t1"; gene_id "g119"; --- 4938,4939 ---- ! chrI AUGUSTUS internal 768649 768872 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS internal 769762 769873 0.98 - 2 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4941 **** ! chrI AUGUSTUS internal 772771 772985 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; --- 4941 ---- ! chrI AUGUSTUS internal 772771 772985 1 - 1 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4945,4946 **** ! chrI AUGUSTUS initial 775946 776020 0.45 - 0 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS intron 761515 762147 0.98 - . transcript_id "g119.t1"; gene_id "g119"; --- 4945,4946 ---- ! chrI AUGUSTUS initial 775946 776020 0.54 - 0 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS intron 761515 762147 1 - . transcript_id "g119.t1"; gene_id "g119"; *************** *** 4950,4952 **** ! chrI AUGUSTUS intron 765898 767170 0.96 - . transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS intron 767831 768648 1 - . transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS intron 768873 769761 1 - . transcript_id "g119.t1"; gene_id "g119"; --- 4950,4952 ---- ! chrI AUGUSTUS intron 765898 767170 0.98 - . transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS intron 767831 768648 0.98 - . transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS intron 768873 769761 0.98 - . transcript_id "g119.t1"; gene_id "g119"; *************** *** 4954 **** ! chrI AUGUSTUS intron 771372 772770 0.99 - . transcript_id "g119.t1"; gene_id "g119"; --- 4954 ---- ! chrI AUGUSTUS intron 771372 772770 1 - . transcript_id "g119.t1"; gene_id "g119"; *************** *** 4958,4960 **** ! chrI AUGUSTUS intron 775896 775945 0.97 - . transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS CDS 761319 761514 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS CDS 762148 762393 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; --- 4958,4960 ---- ! chrI AUGUSTUS intron 775896 775945 1 - . transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS CDS 761319 761514 1 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS CDS 762148 762393 1 - 1 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4965,4966 **** ! chrI AUGUSTUS CDS 768649 768872 1 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS CDS 769762 769873 1 - 2 transcript_id "g119.t1"; gene_id "g119"; --- 4965,4966 ---- ! chrI AUGUSTUS CDS 768649 768872 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; ! chrI AUGUSTUS CDS 769762 769873 0.98 - 2 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4968 **** ! chrI AUGUSTUS CDS 772771 772985 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; --- 4968 ---- ! chrI AUGUSTUS CDS 772771 772985 1 - 1 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4972 **** ! chrI AUGUSTUS CDS 775946 776020 0.45 - 0 transcript_id "g119.t1"; gene_id "g119"; --- 4972 ---- ! chrI AUGUSTUS CDS 775946 776020 0.54 - 0 transcript_id "g119.t1"; gene_id "g119"; *************** *** 4974 **** ! chrI AUGUSTUS 5'-UTR 776021 776097 0.23 - . transcript_id "g119.t1"; gene_id "g119"; --- 4974 ---- ! chrI AUGUSTUS 5'-UTR 776021 776097 0.26 - . transcript_id "g119.t1"; gene_id "g119"; *************** *** 5004,5005 **** ! chrI AUGUSTUS gene 776391 778787 0.31 - . g120 ! chrI AUGUSTUS transcript 776391 778787 0.31 - . g120.t1 --- 5004,5005 ---- ! chrI AUGUSTUS gene 776391 778787 0.28 - . g120 ! chrI AUGUSTUS transcript 776391 778787 0.28 - . g120.t1 *************** *** 5010,5013 **** ! chrI AUGUSTUS internal 776988 777099 1 - 1 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS internal 777149 777450 0.96 - 0 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS initial 778518 778718 0.86 - 0 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS intron 776551 776987 1 - . transcript_id "g120.t1"; gene_id "g120"; --- 5010,5013 ---- ! chrI AUGUSTUS internal 776988 777099 0.98 - 1 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS internal 777149 777450 0.98 - 0 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS initial 778518 778718 0.88 - 0 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS intron 776551 776987 0.98 - . transcript_id "g120.t1"; gene_id "g120"; *************** *** 5017,5019 **** ! chrI AUGUSTUS CDS 776988 777099 1 - 1 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS CDS 777149 777450 0.96 - 0 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS CDS 778518 778718 0.86 - 0 transcript_id "g120.t1"; gene_id "g120"; --- 5017,5019 ---- ! chrI AUGUSTUS CDS 776988 777099 0.98 - 1 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS CDS 777149 777450 0.98 - 0 transcript_id "g120.t1"; gene_id "g120"; ! chrI AUGUSTUS CDS 778518 778718 0.88 - 0 transcript_id "g120.t1"; gene_id "g120"; *************** *** 5021 **** ! chrI AUGUSTUS 5'-UTR 778719 778787 0.55 - . transcript_id "g120.t1"; gene_id "g120"; --- 5021 ---- ! chrI AUGUSTUS 5'-UTR 778719 778787 0.5 - . transcript_id "g120.t1"; gene_id "g120"; *************** *** 5038,5039 **** ! chrI AUGUSTUS gene 780819 784447 0.35 - . g121 ! chrI AUGUSTUS transcript 780819 784447 0.35 - . g121.t1 --- 5038,5039 ---- ! chrI AUGUSTUS gene 780819 784447 0.26 - . g121 ! chrI AUGUSTUS transcript 780819 784447 0.26 - . g121.t1 *************** *** 5043 **** ! chrI AUGUSTUS terminal 780851 781718 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; --- 5043 ---- ! chrI AUGUSTUS terminal 780851 781718 1 - 1 transcript_id "g121.t1"; gene_id "g121"; *************** *** 5047,5052 **** ! chrI AUGUSTUS internal 782646 782791 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 782841 783056 1 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783098 783173 1 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783223 783361 0.97 - 0 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783525 783589 0.95 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783643 783776 0.91 - 1 transcript_id "g121.t1"; gene_id "g121"; --- 5047,5052 ---- ! chrI AUGUSTUS internal 782646 782791 0.96 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 782841 783056 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783098 783173 0.99 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783223 783361 0.98 - 0 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783525 783589 0.94 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS internal 783643 783776 0.93 - 1 transcript_id "g121.t1"; gene_id "g121"; *************** *** 5058 **** ! chrI AUGUSTUS intron 782589 782645 0.99 - . transcript_id "g121.t1"; gene_id "g121"; --- 5058 ---- ! chrI AUGUSTUS intron 782589 782645 0.96 - . transcript_id "g121.t1"; gene_id "g121"; *************** *** 5060,5061 **** ! chrI AUGUSTUS intron 783057 783097 1 - . transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS intron 783174 783222 0.99 - . transcript_id "g121.t1"; gene_id "g121"; --- 5060,5061 ---- ! chrI AUGUSTUS intron 783057 783097 0.99 - . transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS intron 783174 783222 1 - . transcript_id "g121.t1"; gene_id "g121"; *************** *** 5063 **** ! chrI AUGUSTUS intron 783590 783642 0.89 - . transcript_id "g121.t1"; gene_id "g121"; --- 5063 ---- ! chrI AUGUSTUS intron 783590 783642 0.91 - . transcript_id "g121.t1"; gene_id "g121"; *************** *** 5066 **** ! chrI AUGUSTUS CDS 780851 781718 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; --- 5066 ---- ! chrI AUGUSTUS CDS 780851 781718 1 - 1 transcript_id "g121.t1"; gene_id "g121"; *************** *** 5070,5075 **** ! chrI AUGUSTUS CDS 782646 782791 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 782841 783056 1 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783098 783173 1 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783223 783361 0.97 - 0 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783525 783589 0.95 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783643 783776 0.91 - 1 transcript_id "g121.t1"; gene_id "g121"; --- 5070,5075 ---- ! chrI AUGUSTUS CDS 782646 782791 0.96 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 782841 783056 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783098 783173 0.99 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783223 783361 0.98 - 0 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783525 783589 0.94 - 2 transcript_id "g121.t1"; gene_id "g121"; ! chrI AUGUSTUS CDS 783643 783776 0.93 - 1 transcript_id "g121.t1"; gene_id "g121"; *************** *** 5079 **** ! chrI AUGUSTUS 5'-UTR 784273 784447 0.45 - . transcript_id "g121.t1"; gene_id "g121"; --- 5079 ---- ! chrI AUGUSTUS 5'-UTR 784273 784447 0.36 - . transcript_id "g121.t1"; gene_id "g121"; *************** *** 5101,5102 **** ! chrI AUGUSTUS gene 784623 785837 0.62 - . g122 ! chrI AUGUSTUS transcript 784623 785837 0.62 - . g122.t1 --- 5101,5102 ---- ! chrI AUGUSTUS gene 784623 785837 0.72 - . g122 ! chrI AUGUSTUS transcript 784623 785837 0.72 - . g122.t1 *************** *** 5104 **** ! chrI AUGUSTUS 3'-UTR 784623 784667 0.69 - . transcript_id "g122.t1"; gene_id "g122"; --- 5104 ---- ! chrI AUGUSTUS 3'-UTR 784623 784667 0.74 - . transcript_id "g122.t1"; gene_id "g122"; *************** *** 5108 **** ! chrI AUGUSTUS initial 785596 785797 0.99 - 0 transcript_id "g122.t1"; gene_id "g122"; --- 5108 ---- ! chrI AUGUSTUS initial 785596 785797 1 - 0 transcript_id "g122.t1"; gene_id "g122"; *************** *** 5113 **** ! chrI AUGUSTUS CDS 785596 785797 0.99 - 0 transcript_id "g122.t1"; gene_id "g122"; --- 5113 ---- ! chrI AUGUSTUS CDS 785596 785797 1 - 0 transcript_id "g122.t1"; gene_id "g122"; *************** *** 5115 **** ! chrI AUGUSTUS 5'-UTR 785798 785837 0.93 - . transcript_id "g122.t1"; gene_id "g122"; --- 5115 ---- ! chrI AUGUSTUS 5'-UTR 785798 785837 0.97 - . transcript_id "g122.t1"; gene_id "g122"; *************** *** 5132,5133 **** ! chrI AUGUSTUS gene 786358 787567 0.2 + . g123 ! chrI AUGUSTUS transcript 786358 787567 0.2 + . g123.t1 --- 5132,5133 ---- ! chrI AUGUSTUS gene 786358 787567 0.18 + . g123 ! chrI AUGUSTUS transcript 786358 787567 0.18 + . g123.t1 *************** *** 5135 **** ! chrI AUGUSTUS 5'-UTR 786358 786387 0.47 + . transcript_id "g123.t1"; gene_id "g123"; --- 5135 ---- ! chrI AUGUSTUS 5'-UTR 786358 786387 0.31 + . transcript_id "g123.t1"; gene_id "g123"; *************** *** 5137,5138 **** ! chrI AUGUSTUS initial 786388 786502 1 + 0 transcript_id "g123.t1"; gene_id "g123"; ! chrI AUGUSTUS internal 786708 787369 1 + 2 transcript_id "g123.t1"; gene_id "g123"; --- 5137,5138 ---- ! chrI AUGUSTUS initial 786388 786502 0.99 + 0 transcript_id "g123.t1"; gene_id "g123"; ! chrI AUGUSTUS internal 786708 787369 0.99 + 2 transcript_id "g123.t1"; gene_id "g123"; *************** *** 5142,5143 **** ! chrI AUGUSTUS CDS 786388 786502 1 + 0 transcript_id "g123.t1"; gene_id "g123"; ! chrI AUGUSTUS CDS 786708 787369 1 + 2 transcript_id "g123.t1"; gene_id "g123"; --- 5142,5143 ---- ! chrI AUGUSTUS CDS 786388 786502 0.99 + 0 transcript_id "g123.t1"; gene_id "g123"; ! chrI AUGUSTUS CDS 786708 787369 0.99 + 2 transcript_id "g123.t1"; gene_id "g123"; *************** *** 5146 **** ! chrI AUGUSTUS 3'-UTR 787514 787567 0.38 + . transcript_id "g123.t1"; gene_id "g123"; --- 5146 ---- ! chrI AUGUSTUS 3'-UTR 787514 787567 0.46 + . transcript_id "g123.t1"; gene_id "g123"; *************** *** 5163,5164 **** ! chrI AUGUSTUS gene 787955 788447 0.32 - . g124 ! chrI AUGUSTUS transcript 787955 788447 0.32 - . g124.t1 --- 5163,5164 ---- ! chrI AUGUSTUS gene 787955 788447 0.33 - . g124 ! chrI AUGUSTUS transcript 787955 788447 0.33 - . g124.t1 *************** *** 5166 **** ! chrI AUGUSTUS 3'-UTR 787955 787981 0.39 - . transcript_id "g124.t1"; gene_id "g124"; --- 5166 ---- ! chrI AUGUSTUS 3'-UTR 787955 787981 0.37 - . transcript_id "g124.t1"; gene_id "g124"; *************** *** 5171 **** ! chrI AUGUSTUS 5'-UTR 788420 788447 0.89 - . transcript_id "g124.t1"; gene_id "g124"; --- 5171 ---- ! chrI AUGUSTUS 5'-UTR 788420 788447 0.92 - . transcript_id "g124.t1"; gene_id "g124"; *************** *** 5186,5187 **** ! chrI AUGUSTUS gene 788750 790347 0.18 - . g125 ! chrI AUGUSTUS transcript 788750 790347 0.18 - . g125.t1 --- 5186,5187 ---- ! chrI AUGUSTUS gene 788750 790347 0.23 - . g125 ! chrI AUGUSTUS transcript 788750 790347 0.23 - . g125.t1 *************** *** 5189 **** ! chrI AUGUSTUS 3'-UTR 788750 788770 0.72 - . transcript_id "g125.t1"; gene_id "g125"; --- 5189 ---- ! chrI AUGUSTUS 3'-UTR 788750 788770 0.76 - . transcript_id "g125.t1"; gene_id "g125"; *************** *** 5191,5193 **** ! chrI AUGUSTUS terminal 788771 789213 0.63 - 2 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS internal 789493 789640 0.93 - 0 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS internal 789686 789750 0.93 - 2 transcript_id "g125.t1"; gene_id "g125"; --- 5191,5193 ---- ! chrI AUGUSTUS terminal 788771 789213 0.62 - 2 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS internal 789493 789640 0.88 - 0 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS internal 789686 789750 0.88 - 2 transcript_id "g125.t1"; gene_id "g125"; *************** *** 5196,5198 **** ! chrI AUGUSTUS initial 790177 790310 0.95 - 0 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS intron 789214 789492 0.94 - . transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS intron 789641 789685 0.93 - . transcript_id "g125.t1"; gene_id "g125"; --- 5196,5198 ---- ! chrI AUGUSTUS initial 790177 790310 0.94 - 0 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS intron 789214 789492 0.91 - . transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS intron 789641 789685 0.88 - . transcript_id "g125.t1"; gene_id "g125"; *************** *** 5201,5204 **** ! chrI AUGUSTUS intron 790131 790176 0.99 - . transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS CDS 788771 789213 0.63 - 2 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS CDS 789493 789640 0.93 - 0 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS CDS 789686 789750 0.93 - 2 transcript_id "g125.t1"; gene_id "g125"; --- 5201,5204 ---- ! chrI AUGUSTUS intron 790131 790176 1 - . transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS CDS 788771 789213 0.62 - 2 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS CDS 789493 789640 0.88 - 0 transcript_id "g125.t1"; gene_id "g125"; ! chrI AUGUSTUS CDS 789686 789750 0.88 - 2 transcript_id "g125.t1"; gene_id "g125"; *************** *** 5207 **** ! chrI AUGUSTUS CDS 790177 790310 0.95 - 0 transcript_id "g125.t1"; gene_id "g125"; --- 5207 ---- ! chrI AUGUSTUS CDS 790177 790310 0.94 - 0 transcript_id "g125.t1"; gene_id "g125"; *************** *** 5209 **** ! chrI AUGUSTUS 5'-UTR 790311 790347 0.57 - . transcript_id "g125.t1"; gene_id "g125"; --- 5209 ---- ! chrI AUGUSTUS 5'-UTR 790311 790347 0.55 - . transcript_id "g125.t1"; gene_id "g125"; *************** *** 5230 **** ! chrI AUGUSTUS 5'-UTR 791668 791689 0.49 + . transcript_id "g126.t1"; gene_id "g126"; --- 5230 ---- ! chrI AUGUSTUS 5'-UTR 791668 791689 0.26 + . transcript_id "g126.t1"; gene_id "g126"; *************** *** 5232,5234 **** ! chrI AUGUSTUS initial 791690 791790 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 791983 792089 1 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 792133 792238 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; --- 5232,5234 ---- ! chrI AUGUSTUS initial 791690 791790 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 791983 792089 0.98 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 792133 792238 0.98 + 2 transcript_id "g126.t1"; gene_id "g126"; *************** *** 5237,5242 **** ! chrI AUGUSTUS internal 794014 794250 0.68 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 794296 794382 0.72 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 794648 794892 0.36 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 795270 795360 0.36 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 796133 796210 0.93 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 796276 796397 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; --- 5237,5242 ---- ! chrI AUGUSTUS internal 794014 794250 0.77 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 794296 794382 0.75 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 794648 794892 0.41 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 795270 795360 0.41 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 796133 796210 0.92 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS internal 796276 796397 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; *************** *** 5245,5249 **** ! chrI AUGUSTUS internal 796919 797063 0.51 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS terminal 797123 797262 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 791791 791982 1 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 792090 792132 1 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 792239 792341 0.99 + . transcript_id "g126.t1"; gene_id "g126"; --- 5245,5249 ---- ! chrI AUGUSTUS internal 796919 797063 0.48 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS terminal 797123 797262 1 + 2 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 791791 791982 0.99 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 792090 792132 0.98 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 792239 792341 1 + . transcript_id "g126.t1"; gene_id "g126"; *************** *** 5252,5256 **** ! chrI AUGUSTUS intron 794251 794295 0.69 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 794383 794647 0.98 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 794893 795269 0.36 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 795361 796132 0.93 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 796211 796275 0.95 + . transcript_id "g126.t1"; gene_id "g126"; --- 5252,5256 ---- ! chrI AUGUSTUS intron 794251 794295 0.78 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 794383 794647 0.96 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 794893 795269 0.41 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 795361 796132 0.92 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS intron 796211 796275 0.96 + . transcript_id "g126.t1"; gene_id "g126"; *************** *** 5260,5263 **** ! chrI AUGUSTUS intron 797064 797122 0.51 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 791690 791790 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 791983 792089 1 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 792133 792238 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; --- 5260,5263 ---- ! chrI AUGUSTUS intron 797064 797122 0.48 + . transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 791690 791790 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 791983 792089 0.98 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 792133 792238 0.98 + 2 transcript_id "g126.t1"; gene_id "g126"; *************** *** 5266,5271 **** ! chrI AUGUSTUS CDS 794014 794250 0.68 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 794296 794382 0.72 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 794648 794892 0.36 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 795270 795360 0.36 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 796133 796210 0.93 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 796276 796397 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; --- 5266,5271 ---- ! chrI AUGUSTUS CDS 794014 794250 0.77 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 794296 794382 0.75 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 794648 794892 0.41 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 795270 795360 0.41 + 1 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 796133 796210 0.92 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 796276 796397 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; *************** *** 5274,5275 **** ! chrI AUGUSTUS CDS 796919 797063 0.51 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 797123 797262 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; --- 5274,5275 ---- ! chrI AUGUSTUS CDS 796919 797063 0.48 + 0 transcript_id "g126.t1"; gene_id "g126"; ! chrI AUGUSTUS CDS 797123 797262 1 + 2 transcript_id "g126.t1"; gene_id "g126"; *************** *** 5277 **** ! chrI AUGUSTUS 3'-UTR 797263 797333 0.88 + . transcript_id "g126.t1"; gene_id "g126"; --- 5277 ---- ! chrI AUGUSTUS 3'-UTR 797263 797333 0.82 + . transcript_id "g126.t1"; gene_id "g126"; *************** *** 5299,5300 **** ! chrI AUGUSTUS gene 798176 799907 0.63 - . g127 ! chrI AUGUSTUS transcript 798176 799907 0.63 - . g127.t1 --- 5299,5300 ---- ! chrI AUGUSTUS gene 798176 799907 0.77 - . g127 ! chrI AUGUSTUS transcript 798176 799907 0.77 - . g127.t1 *************** *** 5302 **** ! chrI AUGUSTUS 3'-UTR 798176 798213 0.71 - . transcript_id "g127.t1"; gene_id "g127"; --- 5302 ---- ! chrI AUGUSTUS 3'-UTR 798176 798213 0.81 - . transcript_id "g127.t1"; gene_id "g127"; *************** *** 5316 **** ! chrI AUGUSTUS 5'-UTR 799846 799907 0.9 - . transcript_id "g127.t1"; gene_id "g127"; --- 5316 ---- ! chrI AUGUSTUS 5'-UTR 799846 799907 0.96 - . transcript_id "g127.t1"; gene_id "g127"; *************** *** 5334,5335 **** ! chrI AUGUSTUS gene 802778 815815 0.06 + . g128 ! chrI AUGUSTUS transcript 802778 815815 0.06 + . g128.t1 --- 5334,5335 ---- ! chrI AUGUSTUS gene 802778 815815 0.04 + . g128 ! chrI AUGUSTUS transcript 802778 815815 0.04 + . g128.t1 *************** *** 5337 **** ! chrI AUGUSTUS 5'-UTR 802778 802822 0.2 + . transcript_id "g128.t1"; gene_id "g128"; --- 5337 ---- ! chrI AUGUSTUS 5'-UTR 802778 802822 0.18 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5342,5343 **** ! chrI AUGUSTUS internal 804939 805231 0.97 + 2 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS internal 805325 805400 0.96 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 5342,5343 ---- ! chrI AUGUSTUS internal 804939 805231 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS internal 805325 805400 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5345,5346 **** ! chrI AUGUSTUS internal 805771 806032 0.74 + 1 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS internal 806795 806972 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 5345,5346 ---- ! chrI AUGUSTUS internal 805771 806032 0.81 + 1 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS internal 806795 806972 0.82 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5356 **** ! chrI AUGUSTUS internal 810290 810588 1 + 2 transcript_id "g128.t1"; gene_id "g128"; --- 5356 ---- ! chrI AUGUSTUS internal 810290 810588 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5359 **** ! chrI AUGUSTUS internal 811471 811623 0.98 + 2 transcript_id "g128.t1"; gene_id "g128"; --- 5359 ---- ! chrI AUGUSTUS internal 811471 811623 1 + 2 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5362 **** ! chrI AUGUSTUS internal 812786 812939 1 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 5362 ---- ! chrI AUGUSTUS internal 812786 812939 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5367,5370 **** ! chrI AUGUSTUS internal 814096 814361 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS terminal 815467 815644 0.97 + 1 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 802962 803997 0.99 + . transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 804105 804151 1 + . transcript_id "g128.t1"; gene_id "g128"; --- 5367,5370 ---- ! chrI AUGUSTUS internal 814096 814361 0.84 + 0 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS terminal 815467 815644 0.98 + 1 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 802962 803997 1 + . transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 804105 804151 0.99 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5372,5374 **** ! chrI AUGUSTUS intron 805232 805324 0.97 + . transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 805401 805455 0.97 + . transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 805724 805770 0.74 + . transcript_id "g128.t1"; gene_id "g128"; --- 5372,5374 ---- ! chrI AUGUSTUS intron 805232 805324 0.99 + . transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 805401 805455 0.99 + . transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS intron 805724 805770 0.81 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5376 **** ! chrI AUGUSTUS intron 806973 807018 0.8 + . transcript_id "g128.t1"; gene_id "g128"; --- 5376 ---- ! chrI AUGUSTUS intron 806973 807018 0.82 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5380 **** ! chrI AUGUSTUS intron 808446 808660 0.87 + . transcript_id "g128.t1"; gene_id "g128"; --- 5380 ---- ! chrI AUGUSTUS intron 808446 808660 0.85 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5389 **** ! chrI AUGUSTUS intron 811624 811674 0.98 + . transcript_id "g128.t1"; gene_id "g128"; --- 5389 ---- ! chrI AUGUSTUS intron 811624 811674 1 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5392 **** ! chrI AUGUSTUS intron 812940 813000 1 + . transcript_id "g128.t1"; gene_id "g128"; --- 5392 ---- ! chrI AUGUSTUS intron 812940 813000 0.99 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5396 **** ! chrI AUGUSTUS intron 813749 814095 0.8 + . transcript_id "g128.t1"; gene_id "g128"; --- 5396 ---- ! chrI AUGUSTUS intron 813749 814095 0.84 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5401,5402 **** ! chrI AUGUSTUS CDS 804939 805231 0.97 + 2 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS CDS 805325 805400 0.96 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 5401,5402 ---- ! chrI AUGUSTUS CDS 804939 805231 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS CDS 805325 805400 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5404,5405 **** ! chrI AUGUSTUS CDS 805771 806032 0.74 + 1 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS CDS 806795 806972 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 5404,5405 ---- ! chrI AUGUSTUS CDS 805771 806032 0.81 + 1 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS CDS 806795 806972 0.82 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5415 **** ! chrI AUGUSTUS CDS 810290 810588 1 + 2 transcript_id "g128.t1"; gene_id "g128"; --- 5415 ---- ! chrI AUGUSTUS CDS 810290 810588 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5418 **** ! chrI AUGUSTUS CDS 811471 811623 0.98 + 2 transcript_id "g128.t1"; gene_id "g128"; --- 5418 ---- ! chrI AUGUSTUS CDS 811471 811623 1 + 2 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5421 **** ! chrI AUGUSTUS CDS 812786 812939 1 + 0 transcript_id "g128.t1"; gene_id "g128"; --- 5421 ---- ! chrI AUGUSTUS CDS 812786 812939 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5426,5427 **** ! chrI AUGUSTUS CDS 814096 814361 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS CDS 815467 815644 0.97 + 1 transcript_id "g128.t1"; gene_id "g128"; --- 5426,5427 ---- ! chrI AUGUSTUS CDS 814096 814361 0.84 + 0 transcript_id "g128.t1"; gene_id "g128"; ! chrI AUGUSTUS CDS 815467 815644 0.98 + 1 transcript_id "g128.t1"; gene_id "g128"; *************** *** 5429 **** ! chrI AUGUSTUS 3'-UTR 815645 815815 0.56 + . transcript_id "g128.t1"; gene_id "g128"; --- 5429 ---- ! chrI AUGUSTUS 3'-UTR 815645 815815 0.54 + . transcript_id "g128.t1"; gene_id "g128"; *************** *** 5462,5463 **** ! chrI AUGUSTUS gene 816458 820763 0.04 + . g129 ! chrI AUGUSTUS transcript 816458 820763 0.04 + . g129.t1 --- 5462,5463 ---- ! chrI AUGUSTUS gene 816458 820763 0.02 + . g129 ! chrI AUGUSTUS transcript 816458 820763 0.02 + . g129.t1 *************** *** 5465 **** ! chrI AUGUSTUS 5'-UTR 816458 816484 0.33 + . transcript_id "g129.t1"; gene_id "g129"; --- 5465 ---- ! chrI AUGUSTUS 5'-UTR 816458 816484 0.28 + . transcript_id "g129.t1"; gene_id "g129"; *************** *** 5470,5473 **** ! chrI AUGUSTUS internal 817555 817626 0.22 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS internal 819485 819696 0.97 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS internal 819765 819836 0.89 + 1 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS internal 819891 820008 0.98 + 1 transcript_id "g129.t1"; gene_id "g129"; --- 5470,5473 ---- ! chrI AUGUSTUS internal 817555 817626 0.17 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS internal 819485 819696 0.96 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS internal 819765 819836 0.91 + 1 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS internal 819891 820008 0.99 + 1 transcript_id "g129.t1"; gene_id "g129"; *************** *** 5478,5480 **** ! chrI AUGUSTUS intron 817627 819484 0.22 + . transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS intron 819697 819764 0.89 + . transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS intron 819837 819890 0.87 + . transcript_id "g129.t1"; gene_id "g129"; --- 5478,5480 ---- ! chrI AUGUSTUS intron 817627 819484 0.17 + . transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS intron 819697 819764 0.91 + . transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS intron 819837 819890 0.9 + . transcript_id "g129.t1"; gene_id "g129"; *************** *** 5485,5488 **** ! chrI AUGUSTUS CDS 817555 817626 0.22 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS CDS 819485 819696 0.97 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS CDS 819765 819836 0.89 + 1 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS CDS 819891 820008 0.98 + 1 transcript_id "g129.t1"; gene_id "g129"; --- 5485,5488 ---- ! chrI AUGUSTUS CDS 817555 817626 0.17 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS CDS 819485 819696 0.96 + 0 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS CDS 819765 819836 0.91 + 1 transcript_id "g129.t1"; gene_id "g129"; ! chrI AUGUSTUS CDS 819891 820008 0.99 + 1 transcript_id "g129.t1"; gene_id "g129"; *************** *** 5491 **** ! chrI AUGUSTUS 3'-UTR 820690 820763 0.31 + . transcript_id "g129.t1"; gene_id "g129"; --- 5491 ---- ! chrI AUGUSTUS 3'-UTR 820690 820763 0.3 + . transcript_id "g129.t1"; gene_id "g129"; *************** *** 5545 **** ! chrI AUGUSTUS 3'-UTR 822236 822933 0.82 - . transcript_id "g131.t1"; gene_id "g131"; --- 5545 ---- ! chrI AUGUSTUS 3'-UTR 822236 822933 0.86 - . transcript_id "g131.t1"; gene_id "g131"; *************** *** 5547,5553 **** ! chrI AUGUSTUS terminal 822934 823010 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS internal 823480 823938 0.99 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS internal 824878 825430 0.96 - 0 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS internal 828481 828599 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS initial 830120 830294 0.76 - 0 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS intron 823011 823479 0.95 - . transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS intron 823939 824877 0.96 - . transcript_id "g131.t1"; gene_id "g131"; --- 5547,5553 ---- ! chrI AUGUSTUS terminal 822934 823010 0.96 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS internal 823480 823938 1 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS internal 824878 825430 0.94 - 0 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS internal 828481 828599 0.98 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS initial 830120 830294 0.73 - 0 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS intron 823011 823479 0.96 - . transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS intron 823939 824877 0.94 - . transcript_id "g131.t1"; gene_id "g131"; *************** *** 5555,5560 **** ! chrI AUGUSTUS intron 828600 830119 0.95 - . transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 822934 823010 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 823480 823938 0.99 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 824878 825430 0.96 - 0 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 828481 828599 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 830120 830294 0.76 - 0 transcript_id "g131.t1"; gene_id "g131"; --- 5555,5560 ---- ! chrI AUGUSTUS intron 828600 830119 0.97 - . transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 822934 823010 0.96 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 823480 823938 1 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 824878 825430 0.94 - 0 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 828481 828599 0.98 - 2 transcript_id "g131.t1"; gene_id "g131"; ! chrI AUGUSTUS CDS 830120 830294 0.73 - 0 transcript_id "g131.t1"; gene_id "g131"; *************** *** 5562 **** ! chrI AUGUSTUS 5'-UTR 830295 830357 0.3 - . transcript_id "g131.t1"; gene_id "g131"; --- 5562 ---- ! chrI AUGUSTUS 5'-UTR 830295 830357 0.29 - . transcript_id "g131.t1"; gene_id "g131"; *************** *** 5581,5582 **** ! chrI AUGUSTUS gene 846948 849832 0.03 + . g132 ! chrI AUGUSTUS transcript 846948 849832 0.03 + . g132.t1 --- 5581,5582 ---- ! chrI AUGUSTUS gene 846948 849832 0.02 + . g132 ! chrI AUGUSTUS transcript 846948 849832 0.02 + . g132.t1 *************** *** 5584 **** ! chrI AUGUSTUS 5'-UTR 846948 846974 0.12 + . transcript_id "g132.t1"; gene_id "g132"; --- 5584 ---- ! chrI AUGUSTUS 5'-UTR 846948 846974 0.1 + . transcript_id "g132.t1"; gene_id "g132"; *************** *** 5586 **** ! chrI AUGUSTUS initial 846975 847055 0.31 + 0 transcript_id "g132.t1"; gene_id "g132"; --- 5586 ---- ! chrI AUGUSTUS initial 846975 847055 0.35 + 0 transcript_id "g132.t1"; gene_id "g132"; *************** *** 5588,5590 **** ! chrI AUGUSTUS internal 848045 848587 0.71 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS internal 849256 849387 0.96 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS terminal 849680 849793 0.98 + 0 transcript_id "g132.t1"; gene_id "g132"; --- 5588,5590 ---- ! chrI AUGUSTUS internal 848045 848587 0.75 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS internal 849256 849387 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS terminal 849680 849793 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; *************** *** 5593,5595 **** ! chrI AUGUSTUS intron 848588 849255 0.99 + . transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS intron 849388 849679 0.97 + . transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS CDS 846975 847055 0.31 + 0 transcript_id "g132.t1"; gene_id "g132"; --- 5593,5595 ---- ! chrI AUGUSTUS intron 848588 849255 1 + . transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS intron 849388 849679 0.99 + . transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS CDS 846975 847055 0.35 + 0 transcript_id "g132.t1"; gene_id "g132"; *************** *** 5597,5599 **** ! chrI AUGUSTUS CDS 848045 848587 0.71 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS CDS 849256 849387 0.96 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS CDS 849680 849793 0.98 + 0 transcript_id "g132.t1"; gene_id "g132"; --- 5597,5599 ---- ! chrI AUGUSTUS CDS 848045 848587 0.75 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS CDS 849256 849387 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; ! chrI AUGUSTUS CDS 849680 849793 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; *************** *** 5601 **** ! chrI AUGUSTUS 3'-UTR 849794 849832 0.22 + . transcript_id "g132.t1"; gene_id "g132"; --- 5601 ---- ! chrI AUGUSTUS 3'-UTR 849794 849832 0.21 + . transcript_id "g132.t1"; gene_id "g132"; *************** *** 5623 **** ! chrI AUGUSTUS 3'-UTR 851958 852030 0.86 - . transcript_id "g133.t1"; gene_id "g133"; --- 5623 ---- ! chrI AUGUSTUS 3'-UTR 851958 852030 0.79 - . transcript_id "g133.t1"; gene_id "g133"; *************** *** 5627,5628 **** ! chrI AUGUSTUS internal 853159 853260 0.95 - 2 transcript_id "g133.t1"; gene_id "g133"; ! chrI AUGUSTUS initial 853316 853319 0.92 - 0 transcript_id "g133.t1"; gene_id "g133"; --- 5627,5628 ---- ! chrI AUGUSTUS internal 853159 853260 0.99 - 2 transcript_id "g133.t1"; gene_id "g133"; ! chrI AUGUSTUS initial 853316 853319 0.98 - 0 transcript_id "g133.t1"; gene_id "g133"; *************** *** 5631 **** ! chrI AUGUSTUS intron 853261 853315 0.95 - . transcript_id "g133.t1"; gene_id "g133"; --- 5631 ---- ! chrI AUGUSTUS intron 853261 853315 0.99 - . transcript_id "g133.t1"; gene_id "g133"; *************** *** 5634,5635 **** ! chrI AUGUSTUS CDS 853159 853260 0.95 - 2 transcript_id "g133.t1"; gene_id "g133"; ! chrI AUGUSTUS CDS 853316 853319 0.92 - 0 transcript_id "g133.t1"; gene_id "g133"; --- 5634,5635 ---- ! chrI AUGUSTUS CDS 853159 853260 0.99 - 2 transcript_id "g133.t1"; gene_id "g133"; ! chrI AUGUSTUS CDS 853316 853319 0.98 - 0 transcript_id "g133.t1"; gene_id "g133"; *************** *** 5637 **** ! chrI AUGUSTUS 5'-UTR 853320 853384 0.84 - . transcript_id "g133.t1"; gene_id "g133"; --- 5637 ---- ! chrI AUGUSTUS 5'-UTR 853320 853384 0.94 - . transcript_id "g133.t1"; gene_id "g133"; *************** *** 5652,5653 **** ! chrI AUGUSTUS gene 853926 855754 0.1 - . g134 ! chrI AUGUSTUS transcript 853926 855754 0.1 - . g134.t1 --- 5652,5653 ---- ! chrI AUGUSTUS gene 853926 855754 0.18 - . g134 ! chrI AUGUSTUS transcript 853926 855754 0.18 - . g134.t1 *************** *** 5655 **** ! chrI AUGUSTUS 3'-UTR 853926 854051 0.39 - . transcript_id "g134.t1"; gene_id "g134"; --- 5655 ---- ! chrI AUGUSTUS 3'-UTR 853926 854051 0.43 - . transcript_id "g134.t1"; gene_id "g134"; *************** *** 5658,5660 **** ! chrI AUGUSTUS internal 854192 854404 0.74 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS internal 854453 855250 0.73 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS initial 855573 855671 0.97 - 0 transcript_id "g134.t1"; gene_id "g134"; --- 5658,5660 ---- ! chrI AUGUSTUS internal 854192 854404 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS internal 854453 855250 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS initial 855573 855671 0.94 - 0 transcript_id "g134.t1"; gene_id "g134"; *************** *** 5662,5663 **** ! chrI AUGUSTUS intron 854405 854452 0.73 - . transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS intron 855251 855572 0.97 - . transcript_id "g134.t1"; gene_id "g134"; --- 5662,5663 ---- ! chrI AUGUSTUS intron 854405 854452 0.85 - . transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS intron 855251 855572 0.94 - . transcript_id "g134.t1"; gene_id "g134"; *************** *** 5665,5667 **** ! chrI AUGUSTUS CDS 854192 854404 0.74 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS CDS 854453 855250 0.73 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS CDS 855573 855671 0.97 - 0 transcript_id "g134.t1"; gene_id "g134"; --- 5665,5667 ---- ! chrI AUGUSTUS CDS 854192 854404 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS CDS 854453 855250 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; ! chrI AUGUSTUS CDS 855573 855671 0.94 - 0 transcript_id "g134.t1"; gene_id "g134"; *************** *** 5669 **** ! chrI AUGUSTUS 5'-UTR 855672 855754 0.38 - . transcript_id "g134.t1"; gene_id "g134"; --- 5669 ---- ! chrI AUGUSTUS 5'-UTR 855672 855754 0.39 - . transcript_id "g134.t1"; gene_id "g134"; *************** *** 5687,5688 **** ! chrI AUGUSTUS gene 866305 869399 0.39 + . g135 ! chrI AUGUSTUS transcript 866305 869399 0.39 + . g135.t1 --- 5687,5688 ---- ! chrI AUGUSTUS gene 866305 869399 0.35 + . g135 ! chrI AUGUSTUS transcript 866305 869399 0.35 + . g135.t1 *************** *** 5690 **** ! chrI AUGUSTUS 5'-UTR 866305 866540 0.85 + . transcript_id "g135.t1"; gene_id "g135"; --- 5690 ---- ! chrI AUGUSTUS 5'-UTR 866305 866540 0.83 + . transcript_id "g135.t1"; gene_id "g135"; *************** *** 5693 **** ! chrI AUGUSTUS internal 867245 867307 0.73 + 0 transcript_id "g135.t1"; gene_id "g135"; --- 5693 ---- ! chrI AUGUSTUS internal 867245 867307 0.72 + 0 transcript_id "g135.t1"; gene_id "g135"; *************** *** 5696,5699 **** ! chrI AUGUSTUS internal 868969 869074 0.92 + 2 transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS terminal 869195 869255 0.92 + 1 transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS intron 866607 867244 0.53 + . transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS intron 867308 867426 0.73 + . transcript_id "g135.t1"; gene_id "g135"; --- 5696,5699 ---- ! chrI AUGUSTUS internal 868969 869074 0.88 + 2 transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS terminal 869195 869255 0.88 + 1 transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS intron 866607 867244 0.5 + . transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS intron 867308 867426 0.72 + . transcript_id "g135.t1"; gene_id "g135"; *************** *** 5701,5702 **** ! chrI AUGUSTUS intron 867932 868968 0.93 + . transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS intron 869075 869194 0.92 + . transcript_id "g135.t1"; gene_id "g135"; --- 5701,5702 ---- ! chrI AUGUSTUS intron 867932 868968 0.91 + . transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS intron 869075 869194 0.88 + . transcript_id "g135.t1"; gene_id "g135"; *************** *** 5704 **** ! chrI AUGUSTUS CDS 867245 867307 0.73 + 0 transcript_id "g135.t1"; gene_id "g135"; --- 5704 ---- ! chrI AUGUSTUS CDS 867245 867307 0.72 + 0 transcript_id "g135.t1"; gene_id "g135"; *************** *** 5707,5708 **** ! chrI AUGUSTUS CDS 868969 869074 0.92 + 2 transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS CDS 869195 869255 0.92 + 1 transcript_id "g135.t1"; gene_id "g135"; --- 5707,5708 ---- ! chrI AUGUSTUS CDS 868969 869074 0.88 + 2 transcript_id "g135.t1"; gene_id "g135"; ! chrI AUGUSTUS CDS 869195 869255 0.88 + 1 transcript_id "g135.t1"; gene_id "g135"; *************** *** 5710 **** ! chrI AUGUSTUS 3'-UTR 869256 869399 0.82 + . transcript_id "g135.t1"; gene_id "g135"; --- 5710 ---- ! chrI AUGUSTUS 3'-UTR 869256 869399 0.79 + . transcript_id "g135.t1"; gene_id "g135"; *************** *** 5727,5728 **** ! chrI AUGUSTUS gene 870496 875324 0.15 - . g136 ! chrI AUGUSTUS transcript 870496 875324 0.15 - . g136.t1 --- 5727,5728 ---- ! chrI AUGUSTUS gene 870496 875324 0.2 - . g136 ! chrI AUGUSTUS transcript 870496 875324 0.2 - . g136.t1 *************** *** 5732,5736 **** ! chrI AUGUSTUS terminal 870609 870632 0.76 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 871499 871716 1 - 2 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 872667 872754 0.75 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 873116 873226 0.9 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 874419 874520 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; --- 5732,5736 ---- ! chrI AUGUSTUS terminal 870609 870632 0.67 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 871499 871716 0.99 - 2 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 872667 872754 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 873116 873226 0.95 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS internal 874419 874520 0.87 - 0 transcript_id "g136.t1"; gene_id "g136"; *************** *** 5738,5744 **** ! chrI AUGUSTUS internal 875083 875153 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS initial 875204 875290 0.97 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 870633 871498 0.76 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 871717 872666 1 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 872755 873115 0.68 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 873227 874418 0.74 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 874521 874869 0.78 - . transcript_id "g136.t1"; gene_id "g136"; --- 5738,5744 ---- ! chrI AUGUSTUS internal 875083 875153 1 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS initial 875204 875290 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 870633 871498 0.67 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 871717 872666 0.99 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 872755 873115 0.75 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 873227 874418 0.86 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS intron 874521 874869 0.87 - . transcript_id "g136.t1"; gene_id "g136"; *************** *** 5746,5751 **** ! chrI AUGUSTUS intron 875154 875203 0.99 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 870609 870632 0.76 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 871499 871716 1 - 2 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 872667 872754 0.75 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 873116 873226 0.9 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 874419 874520 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; --- 5746,5751 ---- ! chrI AUGUSTUS intron 875154 875203 1 - . transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 870609 870632 0.67 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 871499 871716 0.99 - 2 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 872667 872754 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 873116 873226 0.95 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 874419 874520 0.87 - 0 transcript_id "g136.t1"; gene_id "g136"; *************** *** 5753,5754 **** ! chrI AUGUSTUS CDS 875083 875153 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 875204 875290 0.97 - 0 transcript_id "g136.t1"; gene_id "g136"; --- 5753,5754 ---- ! chrI AUGUSTUS CDS 875083 875153 1 - 0 transcript_id "g136.t1"; gene_id "g136"; ! chrI AUGUSTUS CDS 875204 875290 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; *************** *** 5756 **** ! chrI AUGUSTUS 5'-UTR 875291 875324 0.91 - . transcript_id "g136.t1"; gene_id "g136"; --- 5756 ---- ! chrI AUGUSTUS 5'-UTR 875291 875324 0.9 - . transcript_id "g136.t1"; gene_id "g136"; *************** *** 5774,5775 **** ! chrI AUGUSTUS gene 875398 876334 0.81 - . g137 ! chrI AUGUSTUS transcript 875398 876334 0.81 - . g137.t1 --- 5774,5775 ---- ! chrI AUGUSTUS gene 875398 876334 0.82 - . g137 ! chrI AUGUSTUS transcript 875398 876334 0.82 - . g137.t1 *************** *** 5779,5780 **** ! chrI AUGUSTUS terminal 875432 875602 1 - 0 transcript_id "g137.t1"; gene_id "g137"; ! chrI AUGUSTUS internal 875651 875972 1 - 1 transcript_id "g137.t1"; gene_id "g137"; --- 5779,5780 ---- ! chrI AUGUSTUS terminal 875432 875602 0.96 - 0 transcript_id "g137.t1"; gene_id "g137"; ! chrI AUGUSTUS internal 875651 875972 0.96 - 1 transcript_id "g137.t1"; gene_id "g137"; *************** *** 5782 **** ! chrI AUGUSTUS intron 875603 875650 1 - . transcript_id "g137.t1"; gene_id "g137"; --- 5782 ---- ! chrI AUGUSTUS intron 875603 875650 0.96 - . transcript_id "g137.t1"; gene_id "g137"; *************** *** 5784,5785 **** ! chrI AUGUSTUS CDS 875432 875602 1 - 0 transcript_id "g137.t1"; gene_id "g137"; ! chrI AUGUSTUS CDS 875651 875972 1 - 1 transcript_id "g137.t1"; gene_id "g137"; --- 5784,5785 ---- ! chrI AUGUSTUS CDS 875432 875602 0.96 - 0 transcript_id "g137.t1"; gene_id "g137"; ! chrI AUGUSTUS CDS 875651 875972 0.96 - 1 transcript_id "g137.t1"; gene_id "g137"; *************** *** 5788 **** ! chrI AUGUSTUS 5'-UTR 876304 876334 0.81 - . transcript_id "g137.t1"; gene_id "g137"; --- 5788 ---- ! chrI AUGUSTUS 5'-UTR 876304 876334 0.84 - . transcript_id "g137.t1"; gene_id "g137"; *************** *** 5804,5805 **** ! chrI AUGUSTUS gene 876715 878522 0.63 + . g138 ! chrI AUGUSTUS transcript 876715 878522 0.63 + . g138.t1 --- 5804,5805 ---- ! chrI AUGUSTUS gene 876715 878522 0.49 + . g138 ! chrI AUGUSTUS transcript 876715 878522 0.49 + . g138.t1 *************** *** 5807 **** ! chrI AUGUSTUS 5'-UTR 876715 876936 0.92 + . transcript_id "g138.t1"; gene_id "g138"; --- 5807 ---- ! chrI AUGUSTUS 5'-UTR 876715 876936 0.96 + . transcript_id "g138.t1"; gene_id "g138"; *************** *** 5821 **** ! chrI AUGUSTUS 3'-UTR 878039 878522 0.67 + . transcript_id "g138.t1"; gene_id "g138"; --- 5821 ---- ! chrI AUGUSTUS 3'-UTR 878039 878522 0.52 + . transcript_id "g138.t1"; gene_id "g138"; *************** *** 5840,5841 **** ! chrI AUGUSTUS gene 878675 880934 0.68 + . g139 ! chrI AUGUSTUS transcript 878675 880934 0.68 + . g139.t1 --- 5840,5841 ---- ! chrI AUGUSTUS gene 878675 880934 0.51 + . g139 ! chrI AUGUSTUS transcript 878675 880934 0.51 + . g139.t1 *************** *** 5843 **** ! chrI AUGUSTUS 5'-UTR 878675 878834 0.89 + . transcript_id "g139.t1"; gene_id "g139"; --- 5843 ---- ! chrI AUGUSTUS 5'-UTR 878675 878834 0.83 + . transcript_id "g139.t1"; gene_id "g139"; *************** *** 5845 **** ! chrI AUGUSTUS initial 878835 878950 1 + 0 transcript_id "g139.t1"; gene_id "g139"; --- 5845 ---- ! chrI AUGUSTUS initial 878835 878950 0.99 + 0 transcript_id "g139.t1"; gene_id "g139"; *************** *** 5847,5849 **** ! chrI AUGUSTUS internal 879452 879554 0.98 + 1 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS internal 880146 880391 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS terminal 880770 880856 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; --- 5847,5849 ---- ! chrI AUGUSTUS internal 879452 879554 0.97 + 1 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS internal 880146 880391 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS terminal 880770 880856 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; *************** *** 5852,5854 **** ! chrI AUGUSTUS intron 879555 880145 0.98 + . transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS intron 880392 880769 0.96 + . transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS CDS 878835 878950 1 + 0 transcript_id "g139.t1"; gene_id "g139"; --- 5852,5854 ---- ! chrI AUGUSTUS intron 879555 880145 0.97 + . transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS intron 880392 880769 0.91 + . transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS CDS 878835 878950 0.99 + 0 transcript_id "g139.t1"; gene_id "g139"; *************** *** 5856,5858 **** ! chrI AUGUSTUS CDS 879452 879554 0.98 + 1 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS CDS 880146 880391 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS CDS 880770 880856 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; --- 5856,5858 ---- ! chrI AUGUSTUS CDS 879452 879554 0.97 + 1 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS CDS 880146 880391 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; ! chrI AUGUSTUS CDS 880770 880856 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; *************** *** 5860 **** ! chrI AUGUSTUS 3'-UTR 880857 880934 0.77 + . transcript_id "g139.t1"; gene_id "g139"; --- 5860 ---- ! chrI AUGUSTUS 3'-UTR 880857 880934 0.62 + . transcript_id "g139.t1"; gene_id "g139"; *************** *** 5878,5879 **** ! chrI AUGUSTUS gene 881932 883544 0.25 - . g140 ! chrI AUGUSTUS transcript 881932 883544 0.25 - . g140.t1 --- 5878,5879 ---- ! chrI AUGUSTUS gene 881932 883544 0.21 - . g140 ! chrI AUGUSTUS transcript 881932 883544 0.21 - . g140.t1 *************** *** 5881 **** ! chrI AUGUSTUS 3'-UTR 881932 881996 0.42 - . transcript_id "g140.t1"; gene_id "g140"; --- 5881 ---- ! chrI AUGUSTUS 3'-UTR 881932 881996 0.41 - . transcript_id "g140.t1"; gene_id "g140"; *************** *** 5883,5887 **** ! chrI AUGUSTUS terminal 881997 882362 0.78 - 0 transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS initial 883325 883441 0.99 - 0 transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS intron 882363 883324 0.99 - . transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS CDS 881997 882362 0.78 - 0 transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS CDS 883325 883441 0.99 - 0 transcript_id "g140.t1"; gene_id "g140"; --- 5883,5887 ---- ! chrI AUGUSTUS terminal 881997 882362 0.66 - 0 transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS initial 883325 883441 1 - 0 transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS intron 882363 883324 1 - . transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS CDS 881997 882362 0.66 - 0 transcript_id "g140.t1"; gene_id "g140"; ! chrI AUGUSTUS CDS 883325 883441 1 - 0 transcript_id "g140.t1"; gene_id "g140"; *************** *** 5889 **** ! chrI AUGUSTUS 5'-UTR 883442 883544 0.53 - . transcript_id "g140.t1"; gene_id "g140"; --- 5889 ---- ! chrI AUGUSTUS 5'-UTR 883442 883544 0.57 - . transcript_id "g140.t1"; gene_id "g140"; *************** *** 5905,5906 **** ! chrI AUGUSTUS gene 883635 887274 0.26 - . g141 ! chrI AUGUSTUS transcript 883635 887274 0.26 - . g141.t1 --- 5905,5906 ---- ! chrI AUGUSTUS gene 883635 887274 0.22 - . g141 ! chrI AUGUSTUS transcript 883635 887274 0.22 - . g141.t1 *************** *** 5908 **** ! chrI AUGUSTUS 3'-UTR 883635 883864 0.3 - . transcript_id "g141.t1"; gene_id "g141"; --- 5908 ---- ! chrI AUGUSTUS 3'-UTR 883635 883864 0.26 - . transcript_id "g141.t1"; gene_id "g141"; *************** *** 5911,5914 **** ! chrI AUGUSTUS internal 885746 886408 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS initial 887235 887246 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS intron 883961 885745 1 - . transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS intron 886409 887234 0.96 - . transcript_id "g141.t1"; gene_id "g141"; --- 5911,5914 ---- ! chrI AUGUSTUS internal 885746 886408 0.94 - 0 transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS initial 887235 887246 0.97 - 0 transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS intron 883961 885745 0.97 - . transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS intron 886409 887234 0.97 - . transcript_id "g141.t1"; gene_id "g141"; *************** *** 5916,5917 **** ! chrI AUGUSTUS CDS 885746 886408 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS CDS 887235 887246 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; --- 5916,5917 ---- ! chrI AUGUSTUS CDS 885746 886408 0.94 - 0 transcript_id "g141.t1"; gene_id "g141"; ! chrI AUGUSTUS CDS 887235 887246 0.97 - 0 transcript_id "g141.t1"; gene_id "g141"; *************** *** 5919 **** ! chrI AUGUSTUS 5'-UTR 887247 887274 0.9 - . transcript_id "g141.t1"; gene_id "g141"; --- 5919 ---- ! chrI AUGUSTUS 5'-UTR 887247 887274 0.92 - . transcript_id "g141.t1"; gene_id "g141"; *************** *** 5937,5938 **** ! chrI AUGUSTUS gene 887385 887700 0.95 + . g142 ! chrI AUGUSTUS transcript 887385 887700 0.95 + . g142.t1 --- 5937,5938 ---- ! chrI AUGUSTUS gene 887385 887700 0.92 + . g142 ! chrI AUGUSTUS transcript 887385 887700 0.92 + . g142.t1 *************** *** 5940 **** ! chrI AUGUSTUS 5'-UTR 887385 887419 0.96 + . transcript_id "g142.t1"; gene_id "g142"; --- 5940 ---- ! chrI AUGUSTUS 5'-UTR 887385 887419 0.93 + . transcript_id "g142.t1"; gene_id "g142"; *************** *** 5963 **** ! chrI AUGUSTUS 5'-UTR 887755 887800 0.97 + . transcript_id "g143.t1"; gene_id "g143"; --- 5963 ---- ! chrI AUGUSTUS 5'-UTR 887755 887800 1 + . transcript_id "g143.t1"; gene_id "g143"; *************** *** 5965,5966 **** ! chrI AUGUSTUS single 887801 888355 0.94 + 0 transcript_id "g143.t1"; gene_id "g143"; ! chrI AUGUSTUS CDS 887801 888355 0.94 + 0 transcript_id "g143.t1"; gene_id "g143"; --- 5965,5966 ---- ! chrI AUGUSTUS single 887801 888355 0.95 + 0 transcript_id "g143.t1"; gene_id "g143"; ! chrI AUGUSTUS CDS 887801 888355 0.95 + 0 transcript_id "g143.t1"; gene_id "g143"; *************** *** 5968 **** ! chrI AUGUSTUS 3'-UTR 888356 888431 0.49 + . transcript_id "g143.t1"; gene_id "g143"; --- 5968 ---- ! chrI AUGUSTUS 3'-UTR 888356 888431 0.46 + . transcript_id "g143.t1"; gene_id "g143"; *************** *** 5985,5986 **** ! chrI AUGUSTUS gene 888875 889397 0.04 + . g144 ! chrI AUGUSTUS transcript 888875 889397 0.04 + . g144.t1 --- 5985,5986 ---- ! chrI AUGUSTUS gene 888875 889397 0.03 + . g144 ! chrI AUGUSTUS transcript 888875 889397 0.03 + . g144.t1 *************** *** 5988 **** ! chrI AUGUSTUS 5'-UTR 888875 888900 0.2 + . transcript_id "g144.t1"; gene_id "g144"; --- 5988 ---- ! chrI AUGUSTUS 5'-UTR 888875 888900 0.13 + . transcript_id "g144.t1"; gene_id "g144"; *************** *** 5990,5991 **** ! chrI AUGUSTUS single 888901 889356 0.25 + 0 transcript_id "g144.t1"; gene_id "g144"; ! chrI AUGUSTUS CDS 888901 889356 0.25 + 0 transcript_id "g144.t1"; gene_id "g144"; --- 5990,5991 ---- ! chrI AUGUSTUS single 888901 889356 0.3 + 0 transcript_id "g144.t1"; gene_id "g144"; ! chrI AUGUSTUS CDS 888901 889356 0.3 + 0 transcript_id "g144.t1"; gene_id "g144"; *************** *** 5993 **** ! chrI AUGUSTUS 3'-UTR 889357 889397 0.22 + . transcript_id "g144.t1"; gene_id "g144"; --- 5993 ---- ! chrI AUGUSTUS 3'-UTR 889357 889397 0.26 + . transcript_id "g144.t1"; gene_id "g144"; *************** *** 6009,6010 **** ! chrI AUGUSTUS gene 890675 891285 0.28 + . g145 ! chrI AUGUSTUS transcript 890675 891285 0.28 + . g145.t1 --- 6009,6010 ---- ! chrI AUGUSTUS gene 890675 891285 0.31 + . g145 ! chrI AUGUSTUS transcript 890675 891285 0.31 + . g145.t1 *************** *** 6012 **** ! chrI AUGUSTUS 5'-UTR 890675 890830 0.67 + . transcript_id "g145.t1"; gene_id "g145"; --- 6012 ---- ! chrI AUGUSTUS 5'-UTR 890675 890830 0.74 + . transcript_id "g145.t1"; gene_id "g145"; *************** *** 6014,6015 **** ! chrI AUGUSTUS single 890831 891262 0.55 + 0 transcript_id "g145.t1"; gene_id "g145"; ! chrI AUGUSTUS CDS 890831 891262 0.55 + 0 transcript_id "g145.t1"; gene_id "g145"; --- 6014,6015 ---- ! chrI AUGUSTUS single 890831 891262 0.47 + 0 transcript_id "g145.t1"; gene_id "g145"; ! chrI AUGUSTUS CDS 890831 891262 0.47 + 0 transcript_id "g145.t1"; gene_id "g145"; *************** *** 6017 **** ! chrI AUGUSTUS 3'-UTR 891263 891285 0.46 + . transcript_id "g145.t1"; gene_id "g145"; --- 6017 ---- ! chrI AUGUSTUS 3'-UTR 891263 891285 0.39 + . transcript_id "g145.t1"; gene_id "g145"; *************** *** 6033,6034 **** ! chrI AUGUSTUS gene 892114 893744 0.35 - . g146 ! chrI AUGUSTUS transcript 892114 893744 0.35 - . g146.t1 --- 6033,6034 ---- ! chrI AUGUSTUS gene 892114 893744 0.29 - . g146 ! chrI AUGUSTUS transcript 892114 893744 0.29 - . g146.t1 *************** *** 6036 **** ! chrI AUGUSTUS 3'-UTR 892114 892143 0.73 - . transcript_id "g146.t1"; gene_id "g146"; --- 6036 ---- ! chrI AUGUSTUS 3'-UTR 892114 892143 0.74 - . transcript_id "g146.t1"; gene_id "g146"; *************** *** 6038,6040 **** ! chrI AUGUSTUS terminal 892144 892155 0.95 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS internal 892634 892744 1 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS internal 893415 893557 0.95 - 2 transcript_id "g146.t1"; gene_id "g146"; --- 6038,6040 ---- ! chrI AUGUSTUS terminal 892144 892155 0.92 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS internal 892634 892744 0.99 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS internal 893415 893557 0.94 - 2 transcript_id "g146.t1"; gene_id "g146"; *************** *** 6042 **** ! chrI AUGUSTUS intron 892156 892633 0.95 - . transcript_id "g146.t1"; gene_id "g146"; --- 6042 ---- ! chrI AUGUSTUS intron 892156 892633 0.92 - . transcript_id "g146.t1"; gene_id "g146"; *************** *** 6044,6047 **** ! chrI AUGUSTUS intron 893558 893611 0.95 - . transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS CDS 892144 892155 0.95 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS CDS 892634 892744 1 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS CDS 893415 893557 0.95 - 2 transcript_id "g146.t1"; gene_id "g146"; --- 6044,6047 ---- ! chrI AUGUSTUS intron 893558 893611 0.94 - . transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS CDS 892144 892155 0.92 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS CDS 892634 892744 0.99 - 0 transcript_id "g146.t1"; gene_id "g146"; ! chrI AUGUSTUS CDS 893415 893557 0.94 - 2 transcript_id "g146.t1"; gene_id "g146"; *************** *** 6050 **** ! chrI AUGUSTUS 5'-UTR 893715 893744 0.46 - . transcript_id "g146.t1"; gene_id "g146"; --- 6050 ---- ! chrI AUGUSTUS 5'-UTR 893715 893744 0.44 - . transcript_id "g146.t1"; gene_id "g146"; *************** *** 6066,6067 **** ! chrI AUGUSTUS gene 895329 900854 0.4 - . g147 ! chrI AUGUSTUS transcript 895329 900854 0.4 - . g147.t1 --- 6066,6067 ---- ! chrI AUGUSTUS gene 895329 900854 0.44 - . g147 ! chrI AUGUSTUS transcript 895329 900854 0.44 - . g147.t1 *************** *** 6069 **** ! chrI AUGUSTUS 3'-UTR 895329 895562 0.98 - . transcript_id "g147.t1"; gene_id "g147"; --- 6069 ---- ! chrI AUGUSTUS 3'-UTR 895329 895562 0.95 - . transcript_id "g147.t1"; gene_id "g147"; *************** *** 6089 **** ! chrI AUGUSTUS 5'-UTR 900803 900854 0.41 - . transcript_id "g147.t1"; gene_id "g147"; --- 6089 ---- ! chrI AUGUSTUS 5'-UTR 900803 900854 0.47 - . transcript_id "g147.t1"; gene_id "g147"; *************** *** 6116,6117 **** ! chrI AUGUSTUS gene 901315 903007 0.23 + . g148 ! chrI AUGUSTUS transcript 901315 903007 0.23 + . g148.t1 --- 6116,6117 ---- ! chrI AUGUSTUS gene 901315 903007 0.26 + . g148 ! chrI AUGUSTUS transcript 901315 903007 0.26 + . g148.t1 *************** *** 6119 **** ! chrI AUGUSTUS 5'-UTR 901315 901341 0.49 + . transcript_id "g148.t1"; gene_id "g148"; --- 6119 ---- ! chrI AUGUSTUS 5'-UTR 901315 901341 0.59 + . transcript_id "g148.t1"; gene_id "g148"; *************** *** 6121,6122 **** ! chrI AUGUSTUS initial 901342 901402 0.93 + 0 transcript_id "g148.t1"; gene_id "g148"; ! chrI AUGUSTUS internal 901444 901508 0.92 + 2 transcript_id "g148.t1"; gene_id "g148"; --- 6121,6122 ---- ! chrI AUGUSTUS initial 901342 901402 0.97 + 0 transcript_id "g148.t1"; gene_id "g148"; ! chrI AUGUSTUS internal 901444 901508 0.96 + 2 transcript_id "g148.t1"; gene_id "g148"; *************** *** 6124 **** ! chrI AUGUSTUS internal 902382 902462 0.86 + 0 transcript_id "g148.t1"; gene_id "g148"; --- 6124 ---- ! chrI AUGUSTUS internal 902382 902462 0.82 + 0 transcript_id "g148.t1"; gene_id "g148"; *************** *** 6127,6128 **** ! chrI AUGUSTUS intron 901403 901443 0.92 + . transcript_id "g148.t1"; gene_id "g148"; ! chrI AUGUSTUS intron 901509 902155 0.92 + . transcript_id "g148.t1"; gene_id "g148"; --- 6127,6128 ---- ! chrI AUGUSTUS intron 901403 901443 0.96 + . transcript_id "g148.t1"; gene_id "g148"; ! chrI AUGUSTUS intron 901509 902155 0.96 + . transcript_id "g148.t1"; gene_id "g148"; *************** *** 6130 **** ! chrI AUGUSTUS intron 902463 902664 0.86 + . transcript_id "g148.t1"; gene_id "g148"; --- 6130 ---- ! chrI AUGUSTUS intron 902463 902664 0.82 + . transcript_id "g148.t1"; gene_id "g148"; *************** *** 6132,6133 **** ! chrI AUGUSTUS CDS 901342 901402 0.93 + 0 transcript_id "g148.t1"; gene_id "g148"; ! chrI AUGUSTUS CDS 901444 901508 0.92 + 2 transcript_id "g148.t1"; gene_id "g148"; --- 6132,6133 ---- ! chrI AUGUSTUS CDS 901342 901402 0.97 + 0 transcript_id "g148.t1"; gene_id "g148"; ! chrI AUGUSTUS CDS 901444 901508 0.96 + 2 transcript_id "g148.t1"; gene_id "g148"; *************** *** 6135 **** ! chrI AUGUSTUS CDS 902382 902462 0.86 + 0 transcript_id "g148.t1"; gene_id "g148"; --- 6135 ---- ! chrI AUGUSTUS CDS 902382 902462 0.82 + 0 transcript_id "g148.t1"; gene_id "g148"; *************** *** 6139 **** ! chrI AUGUSTUS 3'-UTR 902976 903007 0.5 + . transcript_id "g148.t1"; gene_id "g148"; --- 6139 ---- ! chrI AUGUSTUS 3'-UTR 902976 903007 0.54 + . transcript_id "g148.t1"; gene_id "g148"; *************** *** 6157,6158 **** ! chrI AUGUSTUS gene 903585 907748 0.29 + . g149 ! chrI AUGUSTUS transcript 903585 907748 0.29 + . g149.t1 --- 6157,6158 ---- ! chrI AUGUSTUS gene 903585 907748 0.19 + . g149 ! chrI AUGUSTUS transcript 903585 907748 0.19 + . g149.t1 *************** *** 6160 **** ! chrI AUGUSTUS 5'-UTR 903585 903635 0.73 + . transcript_id "g149.t1"; gene_id "g149"; --- 6160 ---- ! chrI AUGUSTUS 5'-UTR 903585 903635 0.64 + . transcript_id "g149.t1"; gene_id "g149"; *************** *** 6162 **** ! chrI AUGUSTUS initial 903636 903651 1 + 0 transcript_id "g149.t1"; gene_id "g149"; --- 6162 ---- ! chrI AUGUSTUS initial 903636 903651 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; *************** *** 6167,6168 **** ! chrI AUGUSTUS internal 905407 905699 0.91 + 0 transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS internal 906019 906079 0.96 + 1 transcript_id "g149.t1"; gene_id "g149"; --- 6167,6168 ---- ! chrI AUGUSTUS internal 905407 905699 0.96 + 0 transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS internal 906019 906079 0.95 + 1 transcript_id "g149.t1"; gene_id "g149"; *************** *** 6170 **** ! chrI AUGUSTUS internal 906369 906522 0.82 + 1 transcript_id "g149.t1"; gene_id "g149"; --- 6170 ---- ! chrI AUGUSTUS internal 906369 906522 0.81 + 1 transcript_id "g149.t1"; gene_id "g149"; *************** *** 6172 **** ! chrI AUGUSTUS intron 903652 903780 1 + . transcript_id "g149.t1"; gene_id "g149"; --- 6172 ---- ! chrI AUGUSTUS intron 903652 903780 0.98 + . transcript_id "g149.t1"; gene_id "g149"; *************** *** 6176,6177 **** ! chrI AUGUSTUS intron 905330 905406 0.99 + . transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS intron 905700 906018 0.88 + . transcript_id "g149.t1"; gene_id "g149"; --- 6176,6177 ---- ! chrI AUGUSTUS intron 905330 905406 1 + . transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS intron 905700 906018 0.91 + . transcript_id "g149.t1"; gene_id "g149"; *************** *** 6179,6181 **** ! chrI AUGUSTUS intron 906306 906368 0.83 + . transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS intron 906523 907278 0.99 + . transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS CDS 903636 903651 1 + 0 transcript_id "g149.t1"; gene_id "g149"; --- 6179,6181 ---- ! chrI AUGUSTUS intron 906306 906368 0.81 + . transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS intron 906523 907278 1 + . transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS CDS 903636 903651 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; *************** *** 6186,6187 **** ! chrI AUGUSTUS CDS 905407 905699 0.91 + 0 transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS CDS 906019 906079 0.96 + 1 transcript_id "g149.t1"; gene_id "g149"; --- 6186,6187 ---- ! chrI AUGUSTUS CDS 905407 905699 0.96 + 0 transcript_id "g149.t1"; gene_id "g149"; ! chrI AUGUSTUS CDS 906019 906079 0.95 + 1 transcript_id "g149.t1"; gene_id "g149"; *************** *** 6189 **** ! chrI AUGUSTUS CDS 906369 906522 0.82 + 1 transcript_id "g149.t1"; gene_id "g149"; --- 6189 ---- ! chrI AUGUSTUS CDS 906369 906522 0.81 + 1 transcript_id "g149.t1"; gene_id "g149"; *************** *** 6192 **** ! chrI AUGUSTUS 3'-UTR 907711 907748 0.51 + . transcript_id "g149.t1"; gene_id "g149"; --- 6192 ---- ! chrI AUGUSTUS 3'-UTR 907711 907748 0.53 + . transcript_id "g149.t1"; gene_id "g149"; *************** *** 6212,6213 **** ! chrI AUGUSTUS gene 907752 914354 0.08 - . g150 ! chrI AUGUSTUS transcript 907752 914354 0.08 - . g150.t1 --- 6212,6213 ---- ! chrI AUGUSTUS gene 907752 914354 0.06 - . g150 ! chrI AUGUSTUS transcript 907752 914354 0.06 - . g150.t1 *************** *** 6221 **** ! chrI AUGUSTUS initial 913776 914012 0.32 - 0 transcript_id "g150.t1"; gene_id "g150"; --- 6221 ---- ! chrI AUGUSTUS initial 913776 914012 0.35 - 0 transcript_id "g150.t1"; gene_id "g150"; *************** *** 6225 **** ! chrI AUGUSTUS intron 912225 913775 0.96 - . transcript_id "g150.t1"; gene_id "g150"; --- 6225 ---- ! chrI AUGUSTUS intron 912225 913775 0.92 - . transcript_id "g150.t1"; gene_id "g150"; *************** *** 6230 **** ! chrI AUGUSTUS CDS 913776 914012 0.32 - 0 transcript_id "g150.t1"; gene_id "g150"; --- 6230 ---- ! chrI AUGUSTUS CDS 913776 914012 0.35 - 0 transcript_id "g150.t1"; gene_id "g150"; *************** *** 6232 **** ! chrI AUGUSTUS 5'-UTR 914013 914354 0.24 - . transcript_id "g150.t1"; gene_id "g150"; --- 6232 ---- ! chrI AUGUSTUS 5'-UTR 914013 914354 0.19 - . transcript_id "g150.t1"; gene_id "g150"; *************** *** 6250,6251 **** ! chrI AUGUSTUS gene 915175 918861 0.38 + . g151 ! chrI AUGUSTUS transcript 915175 918861 0.38 + . g151.t1 --- 6250,6251 ---- ! chrI AUGUSTUS gene 915175 918861 0.42 + . g151 ! chrI AUGUSTUS transcript 915175 918861 0.42 + . g151.t1 *************** *** 6253 **** ! chrI AUGUSTUS 5'-UTR 915175 915236 0.82 + . transcript_id "g151.t1"; gene_id "g151"; --- 6253 ---- ! chrI AUGUSTUS 5'-UTR 915175 915236 0.9 + . transcript_id "g151.t1"; gene_id "g151"; *************** *** 6255,6256 **** ! chrI AUGUSTUS initial 915237 915292 0.96 + 0 transcript_id "g151.t1"; gene_id "g151"; ! chrI AUGUSTUS internal 915601 915936 0.98 + 1 transcript_id "g151.t1"; gene_id "g151"; --- 6255,6256 ---- ! chrI AUGUSTUS initial 915237 915292 0.99 + 0 transcript_id "g151.t1"; gene_id "g151"; ! chrI AUGUSTUS internal 915601 915936 1 + 1 transcript_id "g151.t1"; gene_id "g151"; *************** *** 6258 **** ! chrI AUGUSTUS internal 916850 917006 0.89 + 1 transcript_id "g151.t1"; gene_id "g151"; --- 6258 ---- ! chrI AUGUSTUS internal 916850 917006 0.9 + 1 transcript_id "g151.t1"; gene_id "g151"; *************** *** 6263,6264 **** ! chrI AUGUSTUS intron 915293 915600 0.98 + . transcript_id "g151.t1"; gene_id "g151"; ! chrI AUGUSTUS intron 915937 915983 0.98 + . transcript_id "g151.t1"; gene_id "g151"; --- 6263,6264 ---- ! chrI AUGUSTUS intron 915293 915600 1 + . transcript_id "g151.t1"; gene_id "g151"; ! chrI AUGUSTUS intron 915937 915983 1 + . transcript_id "g151.t1"; gene_id "g151"; *************** *** 6270,6271 **** ! chrI AUGUSTUS CDS 915237 915292 0.96 + 0 transcript_id "g151.t1"; gene_id "g151"; ! chrI AUGUSTUS CDS 915601 915936 0.98 + 1 transcript_id "g151.t1"; gene_id "g151"; --- 6270,6271 ---- ! chrI AUGUSTUS CDS 915237 915292 0.99 + 0 transcript_id "g151.t1"; gene_id "g151"; ! chrI AUGUSTUS CDS 915601 915936 1 + 1 transcript_id "g151.t1"; gene_id "g151"; *************** *** 6273 **** ! chrI AUGUSTUS CDS 916850 917006 0.89 + 1 transcript_id "g151.t1"; gene_id "g151"; --- 6273 ---- ! chrI AUGUSTUS CDS 916850 917006 0.9 + 1 transcript_id "g151.t1"; gene_id "g151"; *************** *** 6279 **** ! chrI AUGUSTUS 3'-UTR 918808 918861 0.51 + . transcript_id "g151.t1"; gene_id "g151"; --- 6279 ---- ! chrI AUGUSTUS 3'-UTR 918808 918861 0.52 + . transcript_id "g151.t1"; gene_id "g151"; *************** *** 6299,6300 **** ! chrI AUGUSTUS gene 918940 924764 0.09 - . g152 ! chrI AUGUSTUS transcript 918940 924764 0.09 - . g152.t1 --- 6299,6300 ---- ! chrI AUGUSTUS gene 918940 924764 0.06 - . g152 ! chrI AUGUSTUS transcript 918940 924764 0.06 - . g152.t1 *************** *** 6302 **** ! chrI AUGUSTUS 3'-UTR 918940 918964 0.21 - . transcript_id "g152.t1"; gene_id "g152"; --- 6302 ---- ! chrI AUGUSTUS 3'-UTR 918940 918964 0.26 - . transcript_id "g152.t1"; gene_id "g152"; *************** *** 6305,6306 **** ! chrI AUGUSTUS internal 919516 919720 0.35 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chrI AUGUSTUS internal 921374 921951 0.57 - 0 transcript_id "g152.t1"; gene_id "g152"; --- 6305,6306 ---- ! chrI AUGUSTUS internal 919516 919720 0.39 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chrI AUGUSTUS internal 921374 921951 0.71 - 0 transcript_id "g152.t1"; gene_id "g152"; *************** *** 6308 **** ! chrI AUGUSTUS internal 923818 924537 0.99 - 0 transcript_id "g152.t1"; gene_id "g152"; --- 6308 ---- ! chrI AUGUSTUS internal 923818 924537 0.95 - 0 transcript_id "g152.t1"; gene_id "g152"; *************** *** 6311 **** ! chrI AUGUSTUS intron 919721 921373 0.47 - . transcript_id "g152.t1"; gene_id "g152"; --- 6311 ---- ! chrI AUGUSTUS intron 919721 921373 0.5 - . transcript_id "g152.t1"; gene_id "g152"; *************** *** 6313 **** ! chrI AUGUSTUS intron 923169 923817 0.99 - . transcript_id "g152.t1"; gene_id "g152"; --- 6313 ---- ! chrI AUGUSTUS intron 923169 923817 0.95 - . transcript_id "g152.t1"; gene_id "g152"; *************** *** 6316,6317 **** ! chrI AUGUSTUS CDS 919516 919720 0.35 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chrI AUGUSTUS CDS 921374 921951 0.57 - 0 transcript_id "g152.t1"; gene_id "g152"; --- 6316,6317 ---- ! chrI AUGUSTUS CDS 919516 919720 0.39 - 1 transcript_id "g152.t1"; gene_id "g152"; ! chrI AUGUSTUS CDS 921374 921951 0.71 - 0 transcript_id "g152.t1"; gene_id "g152"; *************** *** 6319 **** ! chrI AUGUSTUS CDS 923818 924537 0.99 - 0 transcript_id "g152.t1"; gene_id "g152"; --- 6319 ---- ! chrI AUGUSTUS CDS 923818 924537 0.95 - 0 transcript_id "g152.t1"; gene_id "g152"; *************** *** 6322 **** ! chrI AUGUSTUS 5'-UTR 924696 924764 0.26 - . transcript_id "g152.t1"; gene_id "g152"; --- 6322 ---- ! chrI AUGUSTUS 5'-UTR 924696 924764 0.19 - . transcript_id "g152.t1"; gene_id "g152"; *************** *** 6344,6345 **** ! chrI AUGUSTUS gene 925125 929719 0.1 + . g153 ! chrI AUGUSTUS transcript 925125 929719 0.1 + . g153.t1 --- 6344,6345 ---- ! chrI AUGUSTUS gene 925125 929719 0.11 + . g153 ! chrI AUGUSTUS transcript 925125 929719 0.11 + . g153.t1 *************** *** 6347 **** ! chrI AUGUSTUS 5'-UTR 925125 925245 0.84 + . transcript_id "g153.t1"; gene_id "g153"; --- 6347 ---- ! chrI AUGUSTUS 5'-UTR 925125 925245 0.83 + . transcript_id "g153.t1"; gene_id "g153"; *************** *** 6351 **** ! chrI AUGUSTUS internal 925715 925945 0.52 + 0 transcript_id "g153.t1"; gene_id "g153"; --- 6351 ---- ! chrI AUGUSTUS internal 925715 925945 0.64 + 0 transcript_id "g153.t1"; gene_id "g153"; *************** *** 6353,6355 **** ! chrI AUGUSTUS internal 926826 926913 1 + 0 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS internal 926957 927026 1 + 2 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS internal 927682 927941 0.93 + 1 transcript_id "g153.t1"; gene_id "g153"; --- 6353,6355 ---- ! chrI AUGUSTUS internal 926826 926913 0.99 + 0 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS internal 926957 927026 0.99 + 2 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS internal 927682 927941 0.91 + 1 transcript_id "g153.t1"; gene_id "g153"; *************** *** 6361,6364 **** ! chrI AUGUSTUS intron 925664 925714 0.53 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 925946 926559 0.55 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 926779 926825 0.99 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 926914 926956 1 + . transcript_id "g153.t1"; gene_id "g153"; --- 6361,6364 ---- ! chrI AUGUSTUS intron 925664 925714 0.64 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 925946 926559 0.66 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 926779 926825 0.98 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 926914 926956 0.99 + . transcript_id "g153.t1"; gene_id "g153"; *************** *** 6366,6367 **** ! chrI AUGUSTUS intron 927942 928395 0.92 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 928453 928509 0.99 + . transcript_id "g153.t1"; gene_id "g153"; --- 6366,6367 ---- ! chrI AUGUSTUS intron 927942 928395 0.91 + . transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS intron 928453 928509 1 + . transcript_id "g153.t1"; gene_id "g153"; *************** *** 6372 **** ! chrI AUGUSTUS CDS 925715 925945 0.52 + 0 transcript_id "g153.t1"; gene_id "g153"; --- 6372 ---- ! chrI AUGUSTUS CDS 925715 925945 0.64 + 0 transcript_id "g153.t1"; gene_id "g153"; *************** *** 6374,6376 **** ! chrI AUGUSTUS CDS 926826 926913 1 + 0 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS CDS 926957 927026 1 + 2 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS CDS 927682 927941 0.93 + 1 transcript_id "g153.t1"; gene_id "g153"; --- 6374,6376 ---- ! chrI AUGUSTUS CDS 926826 926913 0.99 + 0 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS CDS 926957 927026 0.99 + 2 transcript_id "g153.t1"; gene_id "g153"; ! chrI AUGUSTUS CDS 927682 927941 0.91 + 1 transcript_id "g153.t1"; gene_id "g153"; *************** *** 6382 **** ! chrI AUGUSTUS 3'-UTR 929353 929719 0.31 + . transcript_id "g153.t1"; gene_id "g153"; --- 6382 ---- ! chrI AUGUSTUS 3'-UTR 929353 929719 0.29 + . transcript_id "g153.t1"; gene_id "g153"; *************** *** 6404,6405 **** ! chrI AUGUSTUS gene 929805 931362 0.26 + . g154 ! chrI AUGUSTUS transcript 929805 931362 0.26 + . g154.t1 --- 6404,6405 ---- ! chrI AUGUSTUS gene 929805 931362 0.27 + . g154 ! chrI AUGUSTUS transcript 929805 931362 0.27 + . g154.t1 *************** *** 6407 **** ! chrI AUGUSTUS 5'-UTR 929805 929840 0.53 + . transcript_id "g154.t1"; gene_id "g154"; --- 6407 ---- ! chrI AUGUSTUS 5'-UTR 929805 929840 0.49 + . transcript_id "g154.t1"; gene_id "g154"; *************** *** 6409,6410 **** ! chrI AUGUSTUS initial 929841 929885 0.88 + 0 transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS internal 929947 930089 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; --- 6409,6410 ---- ! chrI AUGUSTUS initial 929841 929885 0.78 + 0 transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS internal 929947 930089 0.83 + 0 transcript_id "g154.t1"; gene_id "g154"; *************** *** 6412 **** ! chrI AUGUSTUS terminal 931224 931256 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; --- 6412 ---- ! chrI AUGUSTUS terminal 931224 931256 0.85 + 0 transcript_id "g154.t1"; gene_id "g154"; *************** *** 6414,6417 **** ! chrI AUGUSTUS intron 930090 930174 0.84 + . transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS intron 930368 931223 0.84 + . transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS CDS 929841 929885 0.88 + 0 transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS CDS 929947 930089 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; --- 6414,6417 ---- ! chrI AUGUSTUS intron 930090 930174 0.83 + . transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS intron 930368 931223 0.85 + . transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS CDS 929841 929885 0.78 + 0 transcript_id "g154.t1"; gene_id "g154"; ! chrI AUGUSTUS CDS 929947 930089 0.83 + 0 transcript_id "g154.t1"; gene_id "g154"; *************** *** 6419 **** ! chrI AUGUSTUS CDS 931224 931256 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; --- 6419 ---- ! chrI AUGUSTUS CDS 931224 931256 0.85 + 0 transcript_id "g154.t1"; gene_id "g154"; *************** *** 6421 **** ! chrI AUGUSTUS 3'-UTR 931257 931362 0.65 + . transcript_id "g154.t1"; gene_id "g154"; --- 6421 ---- ! chrI AUGUSTUS 3'-UTR 931257 931362 0.6 + . transcript_id "g154.t1"; gene_id "g154"; *************** *** 6437,6438 **** ! chrI AUGUSTUS gene 931425 939478 0.24 + . g155 ! chrI AUGUSTUS transcript 931425 939478 0.24 + . g155.t1 --- 6437,6438 ---- ! chrI AUGUSTUS gene 931425 939478 0.2 + . g155 ! chrI AUGUSTUS transcript 931425 939478 0.2 + . g155.t1 *************** *** 6440 **** ! chrI AUGUSTUS 5'-UTR 931425 931461 0.59 + . transcript_id "g155.t1"; gene_id "g155"; --- 6440 ---- ! chrI AUGUSTUS 5'-UTR 931425 931461 0.54 + . transcript_id "g155.t1"; gene_id "g155"; *************** *** 6449,6451 **** ! chrI AUGUSTUS internal 937759 937919 0.97 + 0 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS internal 938443 938677 0.43 + 1 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS terminal 939448 939453 0.62 + 0 transcript_id "g155.t1"; gene_id "g155"; --- 6449,6451 ---- ! chrI AUGUSTUS internal 937759 937919 0.94 + 0 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS internal 938443 938677 0.37 + 1 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS terminal 939448 939453 0.64 + 0 transcript_id "g155.t1"; gene_id "g155"; *************** *** 6459,6460 **** ! chrI AUGUSTUS intron 937920 938442 0.97 + . transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS intron 938678 939447 0.43 + . transcript_id "g155.t1"; gene_id "g155"; --- 6459,6460 ---- ! chrI AUGUSTUS intron 937920 938442 0.94 + . transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS intron 938678 939447 0.39 + . transcript_id "g155.t1"; gene_id "g155"; *************** *** 6468,6470 **** ! chrI AUGUSTUS CDS 937759 937919 0.97 + 0 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS CDS 938443 938677 0.43 + 1 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS CDS 939448 939453 0.62 + 0 transcript_id "g155.t1"; gene_id "g155"; --- 6468,6470 ---- ! chrI AUGUSTUS CDS 937759 937919 0.94 + 0 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS CDS 938443 938677 0.37 + 1 transcript_id "g155.t1"; gene_id "g155"; ! chrI AUGUSTUS CDS 939448 939453 0.64 + 0 transcript_id "g155.t1"; gene_id "g155"; *************** *** 6472 **** ! chrI AUGUSTUS 3'-UTR 939454 939478 0.58 + . transcript_id "g155.t1"; gene_id "g155"; --- 6472 ---- ! chrI AUGUSTUS 3'-UTR 939454 939478 0.63 + . transcript_id "g155.t1"; gene_id "g155"; *************** *** 6492,6493 **** ! chrI AUGUSTUS gene 939485 940284 0.21 - . g156 ! chrI AUGUSTUS transcript 939485 940284 0.21 - . g156.t1 --- 6492,6493 ---- ! chrI AUGUSTUS gene 939485 940284 0.22 - . g156 ! chrI AUGUSTUS transcript 939485 940284 0.22 - . g156.t1 *************** *** 6495 **** ! chrI AUGUSTUS 3'-UTR 939485 939519 0.68 - . transcript_id "g156.t1"; gene_id "g156"; --- 6495 ---- ! chrI AUGUSTUS 3'-UTR 939485 939519 0.74 - . transcript_id "g156.t1"; gene_id "g156"; *************** *** 6497,6501 **** ! chrI AUGUSTUS terminal 939520 939744 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS initial 940165 940236 0.96 - 0 transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS intron 939745 940164 0.95 - . transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS CDS 939520 939744 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS CDS 940165 940236 0.96 - 0 transcript_id "g156.t1"; gene_id "g156"; --- 6497,6501 ---- ! chrI AUGUSTUS terminal 939520 939744 1 - 0 transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS initial 940165 940236 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS intron 939745 940164 0.99 - . transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS CDS 939520 939744 1 - 0 transcript_id "g156.t1"; gene_id "g156"; ! chrI AUGUSTUS CDS 940165 940236 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; *************** *** 6503 **** ! chrI AUGUSTUS 5'-UTR 940237 940284 0.35 - . transcript_id "g156.t1"; gene_id "g156"; --- 6503 ---- ! chrI AUGUSTUS 5'-UTR 940237 940284 0.32 - . transcript_id "g156.t1"; gene_id "g156"; *************** *** 6518,6519 **** ! chrI AUGUSTUS gene 940906 941734 0.29 - . g157 ! chrI AUGUSTUS transcript 940906 941734 0.29 - . g157.t1 --- 6518,6519 ---- ! chrI AUGUSTUS gene 940906 941734 0.37 - . g157 ! chrI AUGUSTUS transcript 940906 941734 0.37 - . g157.t1 *************** *** 6521 **** ! chrI AUGUSTUS 3'-UTR 940906 940969 0.84 - . transcript_id "g157.t1"; gene_id "g157"; --- 6521 ---- ! chrI AUGUSTUS 3'-UTR 940906 940969 0.83 - . transcript_id "g157.t1"; gene_id "g157"; *************** *** 6524 **** ! chrI AUGUSTUS initial 941485 941673 0.97 - 0 transcript_id "g157.t1"; gene_id "g157"; --- 6524 ---- ! chrI AUGUSTUS initial 941485 941673 0.99 - 0 transcript_id "g157.t1"; gene_id "g157"; *************** *** 6527 **** ! chrI AUGUSTUS CDS 941485 941673 0.97 - 0 transcript_id "g157.t1"; gene_id "g157"; --- 6527 ---- ! chrI AUGUSTUS CDS 941485 941673 0.99 - 0 transcript_id "g157.t1"; gene_id "g157"; *************** *** 6529 **** ! chrI AUGUSTUS 5'-UTR 941674 941734 0.35 - . transcript_id "g157.t1"; gene_id "g157"; --- 6529 ---- ! chrI AUGUSTUS 5'-UTR 941674 941734 0.45 - . transcript_id "g157.t1"; gene_id "g157"; *************** *** 6545,6546 **** ! chrI AUGUSTUS gene 942875 947107 0.07 + . g158 ! chrI AUGUSTUS transcript 942875 947107 0.07 + . g158.t1 --- 6545,6546 ---- ! chrI AUGUSTUS gene 942875 947107 0.08 + . g158 ! chrI AUGUSTUS transcript 942875 947107 0.08 + . g158.t1 *************** *** 6548 **** ! chrI AUGUSTUS 5'-UTR 942875 942902 0.29 + . transcript_id "g158.t1"; gene_id "g158"; --- 6548 ---- ! chrI AUGUSTUS 5'-UTR 942875 942902 0.25 + . transcript_id "g158.t1"; gene_id "g158"; *************** *** 6550,6553 **** ! chrI AUGUSTUS initial 942903 943021 0.78 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS internal 943078 943204 1 + 1 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS internal 944077 944223 1 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS internal 944275 944382 0.96 + 0 transcript_id "g158.t1"; gene_id "g158"; --- 6550,6553 ---- ! chrI AUGUSTUS initial 942903 943021 0.6 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS internal 943078 943204 0.98 + 1 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS internal 944077 944223 0.98 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS internal 944275 944382 0.95 + 0 transcript_id "g158.t1"; gene_id "g158"; *************** *** 6555,6556 **** ! chrI AUGUSTUS intron 943022 943077 0.83 + . transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS intron 943205 944076 1 + . transcript_id "g158.t1"; gene_id "g158"; --- 6555,6556 ---- ! chrI AUGUSTUS intron 943022 943077 0.78 + . transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS intron 943205 944076 0.98 + . transcript_id "g158.t1"; gene_id "g158"; *************** *** 6559,6562 **** ! chrI AUGUSTUS CDS 942903 943021 0.78 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS CDS 943078 943204 1 + 1 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS CDS 944077 944223 1 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS CDS 944275 944382 0.96 + 0 transcript_id "g158.t1"; gene_id "g158"; --- 6559,6562 ---- ! chrI AUGUSTUS CDS 942903 943021 0.6 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS CDS 943078 943204 0.98 + 1 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS CDS 944077 944223 0.98 + 0 transcript_id "g158.t1"; gene_id "g158"; ! chrI AUGUSTUS CDS 944275 944382 0.95 + 0 transcript_id "g158.t1"; gene_id "g158"; *************** *** 6565 **** ! chrI AUGUSTUS 3'-UTR 946939 947107 0.36 + . transcript_id "g158.t1"; gene_id "g158"; --- 6565 ---- ! chrI AUGUSTUS 3'-UTR 946939 947107 0.44 + . transcript_id "g158.t1"; gene_id "g158"; *************** *** 6583,6584 **** ! chrI AUGUSTUS gene 948405 948752 0.9 + . g159 ! chrI AUGUSTUS transcript 948405 948752 0.9 + . g159.t1 --- 6583,6584 ---- ! chrI AUGUSTUS gene 948405 948752 0.89 + . g159 ! chrI AUGUSTUS transcript 948405 948752 0.89 + . g159.t1 *************** *** 6591 **** ! chrI AUGUSTUS 3'-UTR 948694 948752 1 + . transcript_id "g159.t1"; gene_id "g159"; --- 6591 ---- ! chrI AUGUSTUS 3'-UTR 948694 948752 0.99 + . transcript_id "g159.t1"; gene_id "g159"; *************** *** 6606,6607 **** ! chrI AUGUSTUS gene 949597 957954 0.17 - . g160 ! chrI AUGUSTUS transcript 949597 957954 0.17 - . g160.t1 --- 6606,6607 ---- ! chrI AUGUSTUS gene 949597 957954 0.21 - . g160 ! chrI AUGUSTUS transcript 949597 957954 0.21 - . g160.t1 *************** *** 6609 **** ! chrI AUGUSTUS 3'-UTR 949597 949975 1 - . transcript_id "g160.t1"; gene_id "g160"; --- 6609 ---- ! chrI AUGUSTUS 3'-UTR 949597 949975 0.99 - . transcript_id "g160.t1"; gene_id "g160"; *************** *** 6615 **** ! chrI AUGUSTUS internal 951673 951770 0.99 - 2 transcript_id "g160.t1"; gene_id "g160"; --- 6615 ---- ! chrI AUGUSTUS internal 951673 951770 0.96 - 2 transcript_id "g160.t1"; gene_id "g160"; *************** *** 6618,6619 **** ! chrI AUGUSTUS internal 953080 953972 0.93 - 1 transcript_id "g160.t1"; gene_id "g160"; ! chrI AUGUSTUS internal 954834 954944 0.83 - 1 transcript_id "g160.t1"; gene_id "g160"; --- 6618,6619 ---- ! chrI AUGUSTUS internal 953080 953972 0.92 - 1 transcript_id "g160.t1"; gene_id "g160"; ! chrI AUGUSTUS internal 954834 954944 0.85 - 1 transcript_id "g160.t1"; gene_id "g160"; *************** *** 6628 **** ! chrI AUGUSTUS intron 951771 951882 0.99 - . transcript_id "g160.t1"; gene_id "g160"; --- 6628 ---- ! chrI AUGUSTUS intron 951771 951882 0.96 - . transcript_id "g160.t1"; gene_id "g160"; *************** *** 6630 **** ! chrI AUGUSTUS intron 952349 953079 1 - . transcript_id "g160.t1"; gene_id "g160"; --- 6630 ---- ! chrI AUGUSTUS intron 952349 953079 0.99 - . transcript_id "g160.t1"; gene_id "g160"; *************** *** 6632 **** ! chrI AUGUSTUS intron 954945 955331 0.84 - . transcript_id "g160.t1"; gene_id "g160"; --- 6632 ---- ! chrI AUGUSTUS intron 954945 955331 0.86 - . transcript_id "g160.t1"; gene_id "g160"; *************** *** 6635 **** ! chrI AUGUSTUS intron 956974 957792 0.99 - . transcript_id "g160.t1"; gene_id "g160"; --- 6635 ---- ! chrI AUGUSTUS intron 956974 957792 0.95 - . transcript_id "g160.t1"; gene_id "g160"; *************** *** 6640 **** ! chrI AUGUSTUS CDS 951673 951770 0.99 - 2 transcript_id "g160.t1"; gene_id "g160"; --- 6640 ---- ! chrI AUGUSTUS CDS 951673 951770 0.96 - 2 transcript_id "g160.t1"; gene_id "g160"; *************** *** 6643,6644 **** ! chrI AUGUSTUS CDS 953080 953972 0.93 - 1 transcript_id "g160.t1"; gene_id "g160"; ! chrI AUGUSTUS CDS 954834 954944 0.83 - 1 transcript_id "g160.t1"; gene_id "g160"; --- 6643,6644 ---- ! chrI AUGUSTUS CDS 953080 953972 0.92 - 1 transcript_id "g160.t1"; gene_id "g160"; ! chrI AUGUSTUS CDS 954834 954944 0.85 - 1 transcript_id "g160.t1"; gene_id "g160"; *************** *** 6650 **** ! chrI AUGUSTUS 5'-UTR 957869 957954 0.24 - . transcript_id "g160.t1"; gene_id "g160"; --- 6650 ---- ! chrI AUGUSTUS 5'-UTR 957869 957954 0.29 - . transcript_id "g160.t1"; gene_id "g160"; *************** *** 6675,6676 **** ! chrI AUGUSTUS gene 981656 995734 0.01 - . g161 ! chrI AUGUSTUS transcript 981656 995734 0.01 - . g161.t1 --- 6675,6676 ---- ! chrI AUGUSTUS gene 981656 995734 0.03 - . g161 ! chrI AUGUSTUS transcript 981656 995734 0.03 - . g161.t1 *************** *** 6678 **** ! chrI AUGUSTUS 3'-UTR 981656 981735 0.19 - . transcript_id "g161.t1"; gene_id "g161"; --- 6678 ---- ! chrI AUGUSTUS 3'-UTR 981656 981735 0.18 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6682,6683 **** ! chrI AUGUSTUS internal 983001 983077 0.8 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 983372 983532 0.6 - 0 transcript_id "g161.t1"; gene_id "g161"; --- 6682,6683 ---- ! chrI AUGUSTUS internal 983001 983077 0.79 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 983372 983532 0.53 - 0 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6685,6689 **** ! chrI AUGUSTUS internal 984767 984980 0.88 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 986241 986383 0.96 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 986993 987063 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 987131 987195 0.91 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 987242 987380 0.88 - 0 transcript_id "g161.t1"; gene_id "g161"; --- 6685,6689 ---- ! chrI AUGUSTUS internal 984767 984980 0.78 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 986241 986383 0.94 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 986993 987063 1 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 987131 987195 0.94 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 987242 987380 0.9 - 0 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6692 **** ! chrI AUGUSTUS internal 988709 988819 0.95 - 1 transcript_id "g161.t1"; gene_id "g161"; --- 6692 ---- ! chrI AUGUSTUS internal 988709 988819 0.99 - 1 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6695,6698 **** ! chrI AUGUSTUS internal 993912 994349 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 995246 995419 1 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 995482 995544 0.71 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS initial 995593 995700 0.61 - 0 transcript_id "g161.t1"; gene_id "g161"; --- 6695,6698 ---- ! chrI AUGUSTUS internal 993912 994349 1 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 995246 995419 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS internal 995482 995544 0.74 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS initial 995593 995700 0.55 - 0 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6700,6701 **** ! chrI AUGUSTUS intron 982116 983000 0.98 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 983078 983371 0.65 - . transcript_id "g161.t1"; gene_id "g161"; --- 6700,6701 ---- ! chrI AUGUSTUS intron 982116 983000 0.99 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 983078 983371 0.58 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6703,6708 **** ! chrI AUGUSTUS intron 984185 984766 0.88 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 984981 986240 0.96 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 986384 986992 0.99 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 987064 987130 0.91 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 987196 987241 0.93 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 987381 988234 0.91 - . transcript_id "g161.t1"; gene_id "g161"; --- 6703,6708 ---- ! chrI AUGUSTUS intron 984185 984766 0.8 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 984981 986240 0.92 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 986384 986992 1 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 987064 987130 0.94 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 987196 987241 0.97 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 987381 988234 0.9 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6710,6711 **** ! chrI AUGUSTUS intron 988666 988708 0.96 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 988820 990663 0.95 - . transcript_id "g161.t1"; gene_id "g161"; --- 6710,6711 ---- ! chrI AUGUSTUS intron 988666 988708 0.99 - . transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS intron 988820 990663 0.99 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6714 **** ! chrI AUGUSTUS intron 994350 995245 1 - . transcript_id "g161.t1"; gene_id "g161"; --- 6714 ---- ! chrI AUGUSTUS intron 994350 995245 0.99 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6716 **** ! chrI AUGUSTUS intron 995545 995592 0.7 - . transcript_id "g161.t1"; gene_id "g161"; --- 6716 ---- ! chrI AUGUSTUS intron 995545 995592 0.74 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6719,6720 **** ! chrI AUGUSTUS CDS 983001 983077 0.8 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 983372 983532 0.6 - 0 transcript_id "g161.t1"; gene_id "g161"; --- 6719,6720 ---- ! chrI AUGUSTUS CDS 983001 983077 0.79 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 983372 983532 0.53 - 0 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6722,6726 **** ! chrI AUGUSTUS CDS 984767 984980 0.88 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 986241 986383 0.96 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 986993 987063 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 987131 987195 0.91 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 987242 987380 0.88 - 0 transcript_id "g161.t1"; gene_id "g161"; --- 6722,6726 ---- ! chrI AUGUSTUS CDS 984767 984980 0.78 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 986241 986383 0.94 - 1 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 986993 987063 1 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 987131 987195 0.94 - 2 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 987242 987380 0.9 - 0 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6729 **** ! chrI AUGUSTUS CDS 988709 988819 0.95 - 1 transcript_id "g161.t1"; gene_id "g161"; --- 6729 ---- ! chrI AUGUSTUS CDS 988709 988819 0.99 - 1 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6732,6735 **** ! chrI AUGUSTUS CDS 993912 994349 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 995246 995419 1 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 995482 995544 0.71 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 995593 995700 0.61 - 0 transcript_id "g161.t1"; gene_id "g161"; --- 6732,6735 ---- ! chrI AUGUSTUS CDS 993912 994349 1 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 995246 995419 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 995482 995544 0.74 - 0 transcript_id "g161.t1"; gene_id "g161"; ! chrI AUGUSTUS CDS 995593 995700 0.55 - 0 transcript_id "g161.t1"; gene_id "g161"; *************** *** 6737 **** ! chrI AUGUSTUS 5'-UTR 995701 995734 0.34 - . transcript_id "g161.t1"; gene_id "g161"; --- 6737 ---- ! chrI AUGUSTUS 5'-UTR 995701 995734 0.35 - . transcript_id "g161.t1"; gene_id "g161"; *************** *** 6762,6763 **** ! chrI AUGUSTUS gene 996325 999559 0.22 + . g162 ! chrI AUGUSTUS transcript 996325 999559 0.22 + . g162.t1 --- 6762,6763 ---- ! chrI AUGUSTUS gene 996325 999559 0.29 + . g162 ! chrI AUGUSTUS transcript 996325 999559 0.29 + . g162.t1 *************** *** 6765 **** ! chrI AUGUSTUS 5'-UTR 996325 996510 0.34 + . transcript_id "g162.t1"; gene_id "g162"; --- 6765 ---- ! chrI AUGUSTUS 5'-UTR 996325 996510 0.38 + . transcript_id "g162.t1"; gene_id "g162"; *************** *** 6770 **** ! chrI AUGUSTUS terminal 999166 999520 0.97 + 1 transcript_id "g162.t1"; gene_id "g162"; --- 6770 ---- ! chrI AUGUSTUS terminal 999166 999520 0.99 + 1 transcript_id "g162.t1"; gene_id "g162"; *************** *** 6777 **** ! chrI AUGUSTUS CDS 999166 999520 0.97 + 1 transcript_id "g162.t1"; gene_id "g162"; --- 6777 ---- ! chrI AUGUSTUS CDS 999166 999520 0.99 + 1 transcript_id "g162.t1"; gene_id "g162"; *************** *** 6779 **** ! chrI AUGUSTUS 3'-UTR 999521 999559 0.81 + . transcript_id "g162.t1"; gene_id "g162"; --- 6779 ---- ! chrI AUGUSTUS 3'-UTR 999521 999559 0.85 + . transcript_id "g162.t1"; gene_id "g162"; ====================================================================== FAIL: test_format_and_error_out (__main__.TestAugustus) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 505, in test_format_and_error_out self.assertEqualFolders(reffolder, resfolder) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders self.assertEqual(diff, '', diff) AssertionError: '*** expected_results/test_format_and_erro[264026 chars]t1\n' != '' : *** expected_results/test_format_and_error_out/augustus.gff3 --- results/test_format_and_error_out/augustus.gff3 *************** *** 5,17 **** ! chrI AUGUSTUS gene 1 10595 0.13 - . ID=g1 ! chrI AUGUSTUS transcript 1 10595 0.13 - . ID=g1.t1;Parent=g1 ! chrI AUGUSTUS intron 1 126 0.48 - . Parent=g1.t1 ! chrI AUGUSTUS intron 218 1066 0.62 - . Parent=g1.t1 ! chrI AUGUSTUS intron 1196 6131 0.99 - . Parent=g1.t1 ! chrI AUGUSTUS intron 6307 7323 0.99 - . Parent=g1.t1 ! chrI AUGUSTUS intron 7569 8589 0.91 - . Parent=g1.t1 ! chrI AUGUSTUS intron 8773 9831 0.99 - . Parent=g1.t1 ! chrI AUGUSTUS intron 9962 10005 0.87 - . Parent=g1.t1 ! chrI AUGUSTUS intron 10101 10166 0.57 - . Parent=g1.t1 ! chrI AUGUSTUS intron 10260 10421 0.57 - . Parent=g1.t1 ! chrI AUGUSTUS CDS 127 217 0.53 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 1067 1195 0.99 - 0 ID=g1.t1.cds;Parent=g1.t1 --- 5,17 ---- ! chrI AUGUSTUS gene 1 10595 0.16 - . ID=g1 ! chrI AUGUSTUS transcript 1 10595 0.16 - . ID=g1.t1;Parent=g1 ! chrI AUGUSTUS intron 1 126 0.55 - . Parent=g1.t1 ! chrI AUGUSTUS intron 218 1066 0.65 - . Parent=g1.t1 ! chrI AUGUSTUS intron 1196 6131 1 - . Parent=g1.t1 ! chrI AUGUSTUS intron 6307 7323 0.98 - . Parent=g1.t1 ! chrI AUGUSTUS intron 7569 8589 0.84 - . Parent=g1.t1 ! chrI AUGUSTUS intron 8773 9831 0.97 - . Parent=g1.t1 ! chrI AUGUSTUS intron 9962 10005 0.89 - . Parent=g1.t1 ! chrI AUGUSTUS intron 10101 10166 0.63 - . Parent=g1.t1 ! chrI AUGUSTUS intron 10260 10421 0.59 - . Parent=g1.t1 ! chrI AUGUSTUS CDS 127 217 0.57 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 1067 1195 1 - 0 ID=g1.t1.cds;Parent=g1.t1 *************** *** 19,24 **** ! chrI AUGUSTUS CDS 7324 7568 0.96 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 8590 8772 0.84 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 9832 9961 0.99 - 1 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 10006 10100 0.87 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 10167 10259 0.57 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 10422 10481 0.85 - 0 ID=g1.t1.cds;Parent=g1.t1 --- 19,24 ---- ! chrI AUGUSTUS CDS 7324 7568 0.93 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 8590 8772 0.72 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 9832 9961 0.97 - 1 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 10006 10100 0.89 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 10167 10259 0.63 - 0 ID=g1.t1.cds;Parent=g1.t1 ! chrI AUGUSTUS CDS 10422 10481 0.84 - 0 ID=g1.t1.cds;Parent=g1.t1 *************** *** 26 **** ! chrI AUGUSTUS five_prime_utr 10482 10595 0.62 - . Parent=g1.t1 --- 26 ---- ! chrI AUGUSTUS five_prime_utr 10482 10595 0.72 - . Parent=g1.t1 *************** *** 45,46 **** ! chrI AUGUSTUS gene 26176 33836 0.03 + . ID=g2 ! chrI AUGUSTUS transcript 26176 33836 0.03 + . ID=g2.t1;Parent=g2 --- 45,46 ---- ! chrI AUGUSTUS gene 26176 33836 0.02 + . ID=g2 ! chrI AUGUSTUS transcript 26176 33836 0.02 + . ID=g2.t1;Parent=g2 *************** *** 48 **** ! chrI AUGUSTUS five_prime_utr 26176 26414 0.27 + . Parent=g2.t1 --- 48 ---- ! chrI AUGUSTUS five_prime_utr 26176 26414 0.43 + . Parent=g2.t1 *************** *** 52,53 **** ! chrI AUGUSTUS intron 28340 28390 0.98 + . Parent=g2.t1 ! chrI AUGUSTUS intron 28597 29675 0.92 + . Parent=g2.t1 --- 52,53 ---- ! chrI AUGUSTUS intron 28340 28390 1 + . Parent=g2.t1 ! chrI AUGUSTUS intron 28597 29675 0.89 + . Parent=g2.t1 *************** *** 55,57 **** ! chrI AUGUSTUS intron 32130 33276 0.56 + . Parent=g2.t1 ! chrI AUGUSTUS intron 33380 33640 0.4 + . Parent=g2.t1 ! chrI AUGUSTUS CDS 26415 26516 0.62 + 0 ID=g2.t1.cds;Parent=g2.t1 --- 55,57 ---- ! chrI AUGUSTUS intron 32130 33276 0.64 + . Parent=g2.t1 ! chrI AUGUSTUS intron 33380 33640 0.36 + . Parent=g2.t1 ! chrI AUGUSTUS CDS 26415 26516 0.75 + 0 ID=g2.t1.cds;Parent=g2.t1 *************** *** 59,64 **** ! chrI AUGUSTUS CDS 28208 28339 0.99 + 0 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 28391 28596 0.9 + 0 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 29676 30014 0.52 + 1 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 31652 32129 0.98 + 1 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 33277 33379 0.41 + 0 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 33641 33660 0.4 + 2 ID=g2.t1.cds;Parent=g2.t1 --- 59,64 ---- ! chrI AUGUSTUS CDS 28208 28339 1 + 0 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 28391 28596 0.89 + 0 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 29676 30014 0.49 + 1 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 31652 32129 1 + 1 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 33277 33379 0.36 + 0 ID=g2.t1.cds;Parent=g2.t1 ! chrI AUGUSTUS CDS 33641 33660 0.36 + 2 ID=g2.t1.cds;Parent=g2.t1 *************** *** 66 **** ! chrI AUGUSTUS three_prime_utr 33661 33836 0.17 + . Parent=g2.t1 --- 66 ---- ! chrI AUGUSTUS three_prime_utr 33661 33836 0.13 + . Parent=g2.t1 *************** *** 90 **** ! chrI AUGUSTUS three_prime_utr 34327 34532 0.63 - . Parent=g3.t1 --- 90 ---- ! chrI AUGUSTUS three_prime_utr 34327 34532 0.65 - . Parent=g3.t1 *************** *** 92 **** ! chrI AUGUSTUS intron 34713 35685 0.69 - . Parent=g3.t1 --- 92 ---- ! chrI AUGUSTUS intron 34713 35685 0.75 - . Parent=g3.t1 *************** *** 95,99 **** ! chrI AUGUSTUS intron 42556 42603 0.49 - . Parent=g3.t1 ! chrI AUGUSTUS intron 42741 43580 0.77 - . Parent=g3.t1 ! chrI AUGUSTUS intron 43704 43756 0.78 - . Parent=g3.t1 ! chrI AUGUSTUS CDS 34533 34712 0.69 - 0 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 35686 36011 1 - 2 ID=g3.t1.cds;Parent=g3.t1 --- 95,99 ---- ! chrI AUGUSTUS intron 42556 42603 0.54 - . Parent=g3.t1 ! chrI AUGUSTUS intron 42741 43580 0.74 - . Parent=g3.t1 ! chrI AUGUSTUS intron 43704 43756 0.77 - . Parent=g3.t1 ! chrI AUGUSTUS CDS 34533 34712 0.76 - 0 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 35686 36011 0.99 - 2 ID=g3.t1.cds;Parent=g3.t1 *************** *** 101,104 **** ! chrI AUGUSTUS CDS 41367 42555 0.49 - 2 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 42604 42740 0.49 - 1 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 43581 43703 0.77 - 1 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 43757 43782 0.99 - 0 ID=g3.t1.cds;Parent=g3.t1 --- 101,104 ---- ! chrI AUGUSTUS CDS 41367 42555 0.54 - 2 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 42604 42740 0.54 - 1 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 43581 43703 0.74 - 1 ID=g3.t1.cds;Parent=g3.t1 ! chrI AUGUSTUS CDS 43757 43782 1 - 0 ID=g3.t1.cds;Parent=g3.t1 *************** *** 106 **** ! chrI AUGUSTUS five_prime_utr 43783 43825 0.31 - . Parent=g3.t1 --- 106 ---- ! chrI AUGUSTUS five_prime_utr 43783 43825 0.41 - . Parent=g3.t1 *************** *** 128,129 **** ! chrI AUGUSTUS gene 46117 50255 0.14 - . ID=g4 ! chrI AUGUSTUS transcript 46117 50255 0.14 - . ID=g4.t1;Parent=g4 --- 128,129 ---- ! chrI AUGUSTUS gene 46117 50255 0.18 - . ID=g4 ! chrI AUGUSTUS transcript 46117 50255 0.18 - . ID=g4.t1;Parent=g4 *************** *** 131,132 **** ! chrI AUGUSTUS three_prime_utr 46117 46144 0.46 - . Parent=g4.t1 ! chrI AUGUSTUS three_prime_utr 46522 46852 0.53 - . Parent=g4.t1 --- 131,132 ---- ! chrI AUGUSTUS three_prime_utr 46117 46144 0.42 - . Parent=g4.t1 ! chrI AUGUSTUS three_prime_utr 46522 46852 0.58 - . Parent=g4.t1 *************** *** 135 **** ! chrI AUGUSTUS CDS 49142 50179 1 - 0 ID=g4.t1.cds;Parent=g4.t1 --- 135 ---- ! chrI AUGUSTUS CDS 49142 50179 0.98 - 0 ID=g4.t1.cds;Parent=g4.t1 *************** *** 137 **** ! chrI AUGUSTUS five_prime_utr 50180 50255 0.51 - . Parent=g4.t1 --- 137 ---- ! chrI AUGUSTUS five_prime_utr 50180 50255 0.44 - . Parent=g4.t1 *************** *** 155,156 **** ! chrI AUGUSTUS gene 50909 59305 0.03 - . ID=g5 ! chrI AUGUSTUS transcript 50909 59305 0.03 - . ID=g5.t1;Parent=g5 --- 155,156 ---- ! chrI AUGUSTUS gene 50909 59305 0.02 - . ID=g5 ! chrI AUGUSTUS transcript 50909 59305 0.02 - . ID=g5.t1;Parent=g5 *************** *** 158 **** ! chrI AUGUSTUS three_prime_utr 50909 50998 0.55 - . Parent=g5.t1 --- 158 ---- ! chrI AUGUSTUS three_prime_utr 50909 50998 0.52 - . Parent=g5.t1 *************** *** 161 **** ! chrI AUGUSTUS intron 52825 53116 0.64 - . Parent=g5.t1 --- 161 ---- ! chrI AUGUSTUS intron 52825 53116 0.67 - . Parent=g5.t1 *************** *** 163,164 **** ! chrI AUGUSTUS intron 53704 55230 0.91 - . Parent=g5.t1 ! chrI AUGUSTUS intron 56157 56597 0.87 - . Parent=g5.t1 --- 163,164 ---- ! chrI AUGUSTUS intron 53704 55230 0.84 - . Parent=g5.t1 ! chrI AUGUSTUS intron 56157 56597 0.72 - . Parent=g5.t1 *************** *** 166,168 **** ! chrI AUGUSTUS intron 58418 58460 0.97 - . Parent=g5.t1 ! chrI AUGUSTUS CDS 50999 51019 0.9 - 0 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 51067 52824 0.67 - 0 ID=g5.t1.cds;Parent=g5.t1 --- 166,168 ---- ! chrI AUGUSTUS intron 58418 58460 0.98 - . Parent=g5.t1 ! chrI AUGUSTUS CDS 50999 51019 0.91 - 0 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 51067 52824 0.68 - 0 ID=g5.t1.cds;Parent=g5.t1 *************** *** 170,174 **** ! chrI AUGUSTUS CDS 53413 53703 0.98 - 0 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 55231 56156 0.82 - 2 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 56598 56774 0.28 - 2 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 57330 58417 0.73 - 1 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 58461 59230 0.91 - 0 ID=g5.t1.cds;Parent=g5.t1 --- 170,174 ---- ! chrI AUGUSTUS CDS 53413 53703 1 - 0 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 55231 56156 0.69 - 2 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 56598 56774 0.27 - 2 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 57330 58417 0.71 - 1 ID=g5.t1.cds;Parent=g5.t1 ! chrI AUGUSTUS CDS 58461 59230 0.9 - 0 ID=g5.t1.cds;Parent=g5.t1 *************** *** 176 **** ! chrI AUGUSTUS five_prime_utr 59231 59305 0.25 - . Parent=g5.t1 --- 176 ---- ! chrI AUGUSTUS five_prime_utr 59231 59305 0.37 - . Parent=g5.t1 *************** *** 210,211 **** ! chrI AUGUSTUS gene 59438 60095 0.14 - . ID=g6 ! chrI AUGUSTUS transcript 59438 60095 0.14 - . ID=g6.t1;Parent=g6 --- 210,211 ---- ! chrI AUGUSTUS gene 59438 60095 0.17 - . ID=g6 ! chrI AUGUSTUS transcript 59438 60095 0.17 - . ID=g6.t1;Parent=g6 *************** *** 213 **** ! chrI AUGUSTUS three_prime_utr 59438 59458 0.84 - . Parent=g6.t1 --- 213 ---- ! chrI AUGUSTUS three_prime_utr 59438 59458 0.77 - . Parent=g6.t1 *************** *** 215 **** ! chrI AUGUSTUS CDS 59459 60046 0.7 - 0 ID=g6.t1.cds;Parent=g6.t1 --- 215 ---- ! chrI AUGUSTUS CDS 59459 60046 0.71 - 0 ID=g6.t1.cds;Parent=g6.t1 *************** *** 217 **** ! chrI AUGUSTUS five_prime_utr 60047 60095 0.24 - . Parent=g6.t1 --- 217 ---- ! chrI AUGUSTUS five_prime_utr 60047 60095 0.22 - . Parent=g6.t1 *************** *** 233,234 **** ! chrI AUGUSTUS gene 60196 60805 0.07 + . ID=g7 ! chrI AUGUSTUS transcript 60196 60805 0.07 + . ID=g7.t1;Parent=g7 --- 233,234 ---- ! chrI AUGUSTUS gene 60196 60805 0.05 + . ID=g7 ! chrI AUGUSTUS transcript 60196 60805 0.05 + . ID=g7.t1;Parent=g7 *************** *** 236 **** ! chrI AUGUSTUS five_prime_utr 60196 60221 0.34 + . Parent=g7.t1 --- 236 ---- ! chrI AUGUSTUS five_prime_utr 60196 60221 0.41 + . Parent=g7.t1 *************** *** 240 **** ! chrI AUGUSTUS three_prime_utr 60687 60805 0.19 + . Parent=g7.t1 --- 240 ---- ! chrI AUGUSTUS three_prime_utr 60687 60805 0.15 + . Parent=g7.t1 *************** *** 255,256 **** ! chrI AUGUSTUS gene 61530 63965 0.07 - . ID=g8 ! chrI AUGUSTUS transcript 61530 63965 0.07 - . ID=g8.t1;Parent=g8 --- 255,256 ---- ! chrI AUGUSTUS gene 61530 63965 0.05 - . ID=g8 ! chrI AUGUSTUS transcript 61530 63965 0.05 - . ID=g8.t1;Parent=g8 *************** *** 258 **** ! chrI AUGUSTUS three_prime_utr 61530 61737 0.42 - . Parent=g8.t1 --- 258 ---- ! chrI AUGUSTUS three_prime_utr 61530 61737 0.35 - . Parent=g8.t1 *************** *** 261 **** ! chrI AUGUSTUS intron 62066 62795 1 - . Parent=g8.t1 --- 261 ---- ! chrI AUGUSTUS intron 62066 62795 0.98 - . Parent=g8.t1 *************** *** 268 **** ! chrI AUGUSTUS CDS 62796 63272 1 - 1 ID=g8.t1.cds;Parent=g8.t1 --- 268 ---- ! chrI AUGUSTUS CDS 62796 63272 0.98 - 1 ID=g8.t1.cds;Parent=g8.t1 *************** *** 272 **** ! chrI AUGUSTUS CDS 63825 63905 0.5 - 0 ID=g8.t1.cds;Parent=g8.t1 --- 272 ---- ! chrI AUGUSTUS CDS 63825 63905 0.37 - 0 ID=g8.t1.cds;Parent=g8.t1 *************** *** 293,294 **** ! chrI AUGUSTUS gene 64206 64920 0.13 + . ID=g9 ! chrI AUGUSTUS transcript 64206 64920 0.13 + . ID=g9.t1;Parent=g9 --- 293,294 ---- ! chrI AUGUSTUS gene 64206 64920 0.11 + . ID=g9 ! chrI AUGUSTUS transcript 64206 64920 0.11 + . ID=g9.t1;Parent=g9 *************** *** 296 **** ! chrI AUGUSTUS five_prime_utr 64206 64306 0.38 + . Parent=g9.t1 --- 296 ---- ! chrI AUGUSTUS five_prime_utr 64206 64306 0.4 + . Parent=g9.t1 *************** *** 298,299 **** ! chrI AUGUSTUS intron 64401 64451 1 + . Parent=g9.t1 ! chrI AUGUSTUS CDS 64307 64400 1 + 0 ID=g9.t1.cds;Parent=g9.t1 --- 298,299 ---- ! chrI AUGUSTUS intron 64401 64451 0.93 + . Parent=g9.t1 ! chrI AUGUSTUS CDS 64307 64400 0.93 + 0 ID=g9.t1.cds;Parent=g9.t1 *************** *** 302 **** ! chrI AUGUSTUS three_prime_utr 64562 64920 0.3 + . Parent=g9.t1 --- 302 ---- ! chrI AUGUSTUS three_prime_utr 64562 64920 0.29 + . Parent=g9.t1 *************** *** 316,317 **** ! chrI AUGUSTUS gene 64976 65454 0.17 + . ID=g10 ! chrI AUGUSTUS transcript 64976 65454 0.17 + . ID=g10.t1;Parent=g10 --- 316,317 ---- ! chrI AUGUSTUS gene 64976 65454 0.1 + . ID=g10 ! chrI AUGUSTUS transcript 64976 65454 0.1 + . ID=g10.t1;Parent=g10 *************** *** 319 **** ! chrI AUGUSTUS five_prime_utr 64976 65069 0.45 + . Parent=g10.t1 --- 319 ---- ! chrI AUGUSTUS five_prime_utr 64976 65069 0.42 + . Parent=g10.t1 *************** *** 323 **** ! chrI AUGUSTUS CDS 65235 65381 0.85 + 0 ID=g10.t1.cds;Parent=g10.t1 --- 323 ---- ! chrI AUGUSTUS CDS 65235 65381 0.84 + 0 ID=g10.t1.cds;Parent=g10.t1 *************** *** 325 **** ! chrI AUGUSTUS three_prime_utr 65382 65454 0.37 + . Parent=g10.t1 --- 325 ---- ! chrI AUGUSTUS three_prime_utr 65382 65454 0.29 + . Parent=g10.t1 *************** *** 340,341 **** ! chrI AUGUSTUS gene 65726 69080 0.12 + . ID=g11 ! chrI AUGUSTUS transcript 65726 69080 0.12 + . ID=g11.t1;Parent=g11 --- 340,341 ---- ! chrI AUGUSTUS gene 65726 69080 0.06 + . ID=g11 ! chrI AUGUSTUS transcript 65726 69080 0.06 + . ID=g11.t1;Parent=g11 *************** *** 343 **** ! chrI AUGUSTUS five_prime_utr 65726 65750 0.48 + . Parent=g11.t1 --- 343 ---- ! chrI AUGUSTUS five_prime_utr 65726 65750 0.4 + . Parent=g11.t1 *************** *** 345,346 **** ! chrI AUGUSTUS intron 65819 66705 0.62 + . Parent=g11.t1 ! chrI AUGUSTUS intron 66777 66836 0.92 + . Parent=g11.t1 --- 345,346 ---- ! chrI AUGUSTUS intron 65819 66705 0.55 + . Parent=g11.t1 ! chrI AUGUSTUS intron 66777 66836 0.97 + . Parent=g11.t1 *************** *** 348,349 **** ! chrI AUGUSTUS intron 67241 68039 0.89 + . Parent=g11.t1 ! chrI AUGUSTUS intron 68148 68246 0.45 + . Parent=g11.t1 --- 348,349 ---- ! chrI AUGUSTUS intron 67241 68039 0.83 + . Parent=g11.t1 ! chrI AUGUSTUS intron 68148 68246 0.4 + . Parent=g11.t1 *************** *** 352,355 **** ! chrI AUGUSTUS intron 68830 68879 0.81 + . Parent=g11.t1 ! chrI AUGUSTUS CDS 65751 65818 0.62 + 0 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 66706 66776 0.92 + 1 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 66837 66973 0.91 + 2 ID=g11.t1.cds;Parent=g11.t1 --- 352,355 ---- ! chrI AUGUSTUS intron 68830 68879 0.84 + . Parent=g11.t1 ! chrI AUGUSTUS CDS 65751 65818 0.55 + 0 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 66706 66776 0.97 + 1 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 66837 66973 0.96 + 2 ID=g11.t1.cds;Parent=g11.t1 *************** *** 357,358 **** ! chrI AUGUSTUS CDS 68040 68147 0.89 + 0 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 68247 68312 0.51 + 0 ID=g11.t1.cds;Parent=g11.t1 --- 357,358 ---- ! chrI AUGUSTUS CDS 68040 68147 0.83 + 0 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 68247 68312 0.5 + 0 ID=g11.t1.cds;Parent=g11.t1 *************** *** 360,361 **** ! chrI AUGUSTUS CDS 68507 68829 0.96 + 0 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 68880 69051 0.81 + 1 ID=g11.t1.cds;Parent=g11.t1 --- 360,361 ---- ! chrI AUGUSTUS CDS 68507 68829 0.93 + 0 ID=g11.t1.cds;Parent=g11.t1 ! chrI AUGUSTUS CDS 68880 69051 0.84 + 1 ID=g11.t1.cds;Parent=g11.t1 *************** *** 363 **** ! chrI AUGUSTUS three_prime_utr 69052 69080 0.64 + . Parent=g11.t1 --- 363 ---- ! chrI AUGUSTUS three_prime_utr 69052 69080 0.6 + . Parent=g11.t1 *************** *** 381,382 **** ! chrI AUGUSTUS gene 69091 69615 0.14 - . ID=g12 ! chrI AUGUSTUS transcript 69091 69615 0.14 - . ID=g12.t1;Parent=g12 --- 381,382 ---- ! chrI AUGUSTUS gene 69091 69615 0.21 - . ID=g12 ! chrI AUGUSTUS transcript 69091 69615 0.21 - . ID=g12.t1;Parent=g12 *************** *** 384 **** ! chrI AUGUSTUS three_prime_utr 69091 69130 0.69 - . Parent=g12.t1 --- 384 ---- ! chrI AUGUSTUS three_prime_utr 69091 69130 0.63 - . Parent=g12.t1 *************** *** 386 **** ! chrI AUGUSTUS intron 69296 69344 1 - . Parent=g12.t1 --- 386 ---- ! chrI AUGUSTUS intron 69296 69344 0.99 - . Parent=g12.t1 *************** *** 388 **** ! chrI AUGUSTUS CDS 69345 69515 1 - 0 ID=g12.t1.cds;Parent=g12.t1 --- 388 ---- ! chrI AUGUSTUS CDS 69345 69515 0.99 - 0 ID=g12.t1.cds;Parent=g12.t1 *************** *** 390 **** ! chrI AUGUSTUS five_prime_utr 69516 69615 0.19 - . Parent=g12.t1 --- 390 ---- ! chrI AUGUSTUS five_prime_utr 69516 69615 0.29 - . Parent=g12.t1 *************** *** 405,406 **** ! chrI AUGUSTUS gene 69685 70725 0.2 - . ID=g13 ! chrI AUGUSTUS transcript 69685 70725 0.2 - . ID=g13.t1;Parent=g13 --- 405,406 ---- ! chrI AUGUSTUS gene 69685 70725 0.32 - . ID=g13 ! chrI AUGUSTUS transcript 69685 70725 0.32 - . ID=g13.t1;Parent=g13 *************** *** 408 **** ! chrI AUGUSTUS three_prime_utr 69685 69722 0.74 - . Parent=g13.t1 --- 408 ---- ! chrI AUGUSTUS three_prime_utr 69685 69722 0.85 - . Parent=g13.t1 *************** *** 410,411 **** ! chrI AUGUSTUS intron 69840 70053 0.93 - . Parent=g13.t1 ! chrI AUGUSTUS intron 70210 70441 0.97 - . Parent=g13.t1 --- 410,411 ---- ! chrI AUGUSTUS intron 69840 70053 0.89 - . Parent=g13.t1 ! chrI AUGUSTUS intron 70210 70441 0.93 - . Parent=g13.t1 *************** *** 413,414 **** ! chrI AUGUSTUS CDS 70054 70209 0.93 - 0 ID=g13.t1.cds;Parent=g13.t1 ! chrI AUGUSTUS CDS 70442 70606 0.97 - 0 ID=g13.t1.cds;Parent=g13.t1 --- 413,414 ---- ! chrI AUGUSTUS CDS 70054 70209 0.89 - 0 ID=g13.t1.cds;Parent=g13.t1 ! chrI AUGUSTUS CDS 70442 70606 0.93 - 0 ID=g13.t1.cds;Parent=g13.t1 *************** *** 416 **** ! chrI AUGUSTUS five_prime_utr 70607 70725 0.26 - . Parent=g13.t1 --- 416 ---- ! chrI AUGUSTUS five_prime_utr 70607 70725 0.35 - . Parent=g13.t1 *************** *** 431,432 **** ! chrI AUGUSTUS gene 71286 72550 0.33 + . ID=g14 ! chrI AUGUSTUS transcript 71286 72550 0.33 + . ID=g14.t1;Parent=g14 --- 431,432 ---- ! chrI AUGUSTUS gene 71286 72550 0.35 + . ID=g14 ! chrI AUGUSTUS transcript 71286 72550 0.35 + . ID=g14.t1;Parent=g14 *************** *** 434 **** ! chrI AUGUSTUS five_prime_utr 71286 71354 0.45 + . Parent=g14.t1 --- 434 ---- ! chrI AUGUSTUS five_prime_utr 71286 71354 0.49 + . Parent=g14.t1 *************** *** 442 **** ! chrI AUGUSTUS three_prime_utr 72301 72550 0.74 + . Parent=g14.t1 --- 442 ---- ! chrI AUGUSTUS three_prime_utr 72301 72550 0.71 + . Parent=g14.t1 *************** *** 463 **** ! chrI AUGUSTUS five_prime_utr 72656 72681 0.57 + . Parent=g15.t1 --- 463 ---- ! chrI AUGUSTUS five_prime_utr 72656 72681 0.59 + . Parent=g15.t1 *************** *** 465 **** ! chrI AUGUSTUS intron 72809 73420 1 + . Parent=g15.t1 --- 465 ---- ! chrI AUGUSTUS intron 72809 73420 0.99 + . Parent=g15.t1 *************** *** 468 **** ! chrI AUGUSTUS CDS 72682 72808 0.84 + 0 ID=g15.t1.cds;Parent=g15.t1 --- 468 ---- ! chrI AUGUSTUS CDS 72682 72808 0.85 + 0 ID=g15.t1.cds;Parent=g15.t1 *************** *** 473 **** ! chrI AUGUSTUS three_prime_utr 76103 76290 0.3 + . Parent=g15.t1 --- 473 ---- ! chrI AUGUSTUS three_prime_utr 76103 76290 0.24 + . Parent=g15.t1 *************** *** 492,493 **** ! chrI AUGUSTUS gene 76886 85550 0.05 + . ID=g16 ! chrI AUGUSTUS transcript 76886 85550 0.05 + . ID=g16.t1;Parent=g16 --- 492,493 ---- ! chrI AUGUSTUS gene 76886 85550 0.03 + . ID=g16 ! chrI AUGUSTUS transcript 76886 85550 0.03 + . ID=g16.t1;Parent=g16 *************** *** 495,496 **** ! chrI AUGUSTUS five_prime_utr 76886 76916 0.12 + . Parent=g16.t1 ! chrI AUGUSTUS five_prime_utr 78963 78988 0.68 + . Parent=g16.t1 --- 495,496 ---- ! chrI AUGUSTUS five_prime_utr 76886 76916 0.08 + . Parent=g16.t1 ! chrI AUGUSTUS five_prime_utr 78963 78988 0.61 + . Parent=g16.t1 *************** *** 498,499 **** ! chrI AUGUSTUS intron 79057 79265 0.36 + . Parent=g16.t1 ! chrI AUGUSTUS intron 79360 80745 0.76 + . Parent=g16.t1 --- 498,499 ---- ! chrI AUGUSTUS intron 79057 79265 0.33 + . Parent=g16.t1 ! chrI AUGUSTUS intron 79360 80745 0.7 + . Parent=g16.t1 *************** *** 501,507 **** ! chrI AUGUSTUS intron 81312 82815 0.77 + . Parent=g16.t1 ! chrI AUGUSTUS intron 83032 84340 0.97 + . Parent=g16.t1 ! chrI AUGUSTUS intron 84419 84480 0.99 + . Parent=g16.t1 ! chrI AUGUSTUS intron 84553 85252 0.93 + . Parent=g16.t1 ! chrI AUGUSTUS CDS 78989 79056 0.36 + 0 ID=g16.t1.cds;Parent=g16.t1 ! chrI AUGUSTUS CDS 79266 79359 0.76 + 1 ID=g16.t1.cds;Parent=g16.t1 ! chrI AUGUSTUS CDS 80746 80902 0.74 + 0 ID=g16.t1.cds;Parent=g16.t1 --- 501,507 ---- ! chrI AUGUSTUS intron 81312 82815 0.74 + . Parent=g16.t1 ! chrI AUGUSTUS intron 83032 84340 0.98 + . Parent=g16.t1 ! chrI AUGUSTUS intron 84419 84480 1 + . Parent=g16.t1 ! chrI AUGUSTUS intron 84553 85252 0.91 + . Parent=g16.t1 ! chrI AUGUSTUS CDS 78989 79056 0.33 + 0 ID=g16.t1.cds;Parent=g16.t1 ! chrI AUGUSTUS CDS 79266 79359 0.7 + 1 ID=g16.t1.cds;Parent=g16.t1 ! chrI AUGUSTUS CDS 80746 80902 0.69 + 0 ID=g16.t1.cds;Parent=g16.t1 *************** *** 509 **** ! chrI AUGUSTUS CDS 82816 83031 0.97 + 0 ID=g16.t1.cds;Parent=g16.t1 --- 509 ---- ! chrI AUGUSTUS CDS 82816 83031 0.98 + 0 ID=g16.t1.cds;Parent=g16.t1 *************** *** 511 **** ! chrI AUGUSTUS CDS 84481 84552 0.93 + 0 ID=g16.t1.cds;Parent=g16.t1 --- 511 ---- ! chrI AUGUSTUS CDS 84481 84552 0.91 + 0 ID=g16.t1.cds;Parent=g16.t1 *************** *** 514 **** ! chrI AUGUSTUS three_prime_utr 85493 85550 0.74 + . Parent=g16.t1 --- 514 ---- ! chrI AUGUSTUS three_prime_utr 85493 85550 0.69 + . Parent=g16.t1 *************** *** 537 **** ! chrI AUGUSTUS three_prime_utr 85608 85674 0.53 - . Parent=g17.t1 --- 537 ---- ! chrI AUGUSTUS three_prime_utr 85608 85674 0.55 - . Parent=g17.t1 *************** *** 539,541 **** ! chrI AUGUSTUS intron 85818 86937 0.58 - . Parent=g17.t1 ! chrI AUGUSTUS intron 87410 87741 0.86 - . Parent=g17.t1 ! chrI AUGUSTUS intron 87886 88145 1 - . Parent=g17.t1 --- 539,541 ---- ! chrI AUGUSTUS intron 85818 86937 0.62 - . Parent=g17.t1 ! chrI AUGUSTUS intron 87410 87741 0.74 - . Parent=g17.t1 ! chrI AUGUSTUS intron 87886 88145 0.98 - . Parent=g17.t1 *************** *** 544,548 **** ! chrI AUGUSTUS intron 90594 92212 1 - . Parent=g17.t1 ! chrI AUGUSTUS intron 92503 93696 0.81 - . Parent=g17.t1 ! chrI AUGUSTUS CDS 85675 85817 0.58 - 2 ID=g17.t1.cds;Parent=g17.t1 ! chrI AUGUSTUS CDS 86938 87409 0.51 - 0 ID=g17.t1.cds;Parent=g17.t1 ! chrI AUGUSTUS CDS 87742 87885 1 - 0 ID=g17.t1.cds;Parent=g17.t1 --- 544,548 ---- ! chrI AUGUSTUS intron 90594 92212 0.99 - . Parent=g17.t1 ! chrI AUGUSTUS intron 92503 93696 0.73 - . Parent=g17.t1 ! chrI AUGUSTUS CDS 85675 85817 0.62 - 2 ID=g17.t1.cds;Parent=g17.t1 ! chrI AUGUSTUS CDS 86938 87409 0.48 - 0 ID=g17.t1.cds;Parent=g17.t1 ! chrI AUGUSTUS CDS 87742 87885 0.98 - 0 ID=g17.t1.cds;Parent=g17.t1 *************** *** 553 **** ! chrI AUGUSTUS CDS 93697 93798 0.81 - 0 ID=g17.t1.cds;Parent=g17.t1 --- 553 ---- ! chrI AUGUSTUS CDS 93697 93798 0.71 - 0 ID=g17.t1.cds;Parent=g17.t1 *************** *** 555 **** ! chrI AUGUSTUS five_prime_utr 93799 93865 0.36 - . Parent=g17.t1 --- 555 ---- ! chrI AUGUSTUS five_prime_utr 93799 93865 0.38 - . Parent=g17.t1 *************** *** 575,576 **** ! chrI AUGUSTUS gene 97316 105470 0.32 + . ID=g18 ! chrI AUGUSTUS transcript 97316 105470 0.32 + . ID=g18.t1;Parent=g18 --- 575,576 ---- ! chrI AUGUSTUS gene 97316 105470 0.3 + . ID=g18 ! chrI AUGUSTUS transcript 97316 105470 0.3 + . ID=g18.t1;Parent=g18 *************** *** 578 **** ! chrI AUGUSTUS five_prime_utr 97316 97348 0.47 + . Parent=g18.t1 --- 578 ---- ! chrI AUGUSTUS five_prime_utr 97316 97348 0.43 + . Parent=g18.t1 *************** *** 583,585 **** ! chrI AUGUSTUS intron 101007 102144 0.98 + . Parent=g18.t1 ! chrI AUGUSTUS intron 102569 103199 0.85 + . Parent=g18.t1 ! chrI AUGUSTUS intron 103292 103939 0.96 + . Parent=g18.t1 --- 583,585 ---- ! chrI AUGUSTUS intron 101007 102144 0.95 + . Parent=g18.t1 ! chrI AUGUSTUS intron 102569 103199 0.89 + . Parent=g18.t1 ! chrI AUGUSTUS intron 103292 103939 0.97 + . Parent=g18.t1 *************** *** 587 **** ! chrI AUGUSTUS CDS 97349 97447 1 + 0 ID=g18.t1.cds;Parent=g18.t1 --- 587 ---- ! chrI AUGUSTUS CDS 97349 97447 0.98 + 0 ID=g18.t1.cds;Parent=g18.t1 *************** *** 590,592 **** ! chrI AUGUSTUS CDS 100626 101006 0.97 + 0 ID=g18.t1.cds;Parent=g18.t1 ! chrI AUGUSTUS CDS 102145 102568 0.85 + 0 ID=g18.t1.cds;Parent=g18.t1 ! chrI AUGUSTUS CDS 103200 103291 0.96 + 2 ID=g18.t1.cds;Parent=g18.t1 --- 590,592 ---- ! chrI AUGUSTUS CDS 100626 101006 0.95 + 0 ID=g18.t1.cds;Parent=g18.t1 ! chrI AUGUSTUS CDS 102145 102568 0.89 + 0 ID=g18.t1.cds;Parent=g18.t1 ! chrI AUGUSTUS CDS 103200 103291 0.97 + 2 ID=g18.t1.cds;Parent=g18.t1 *************** *** 594 **** ! chrI AUGUSTUS CDS 105186 105448 0.91 + 2 ID=g18.t1.cds;Parent=g18.t1 --- 594 ---- ! chrI AUGUSTUS CDS 105186 105448 0.9 + 2 ID=g18.t1.cds;Parent=g18.t1 *************** *** 617,618 **** ! chrI AUGUSTUS gene 107407 108865 0.5 - . ID=g19 ! chrI AUGUSTUS transcript 107407 108865 0.5 - . ID=g19.t1;Parent=g19 --- 617,618 ---- ! chrI AUGUSTUS gene 107407 108865 0.46 - . ID=g19 ! chrI AUGUSTUS transcript 107407 108865 0.46 - . ID=g19.t1;Parent=g19 *************** *** 620 **** ! chrI AUGUSTUS three_prime_utr 107407 107458 1 - . Parent=g19.t1 --- 620 ---- ! chrI AUGUSTUS three_prime_utr 107407 107458 0.99 - . Parent=g19.t1 *************** *** 623 **** ! chrI AUGUSTUS intron 108640 108775 0.9 - . Parent=g19.t1 --- 623 ---- ! chrI AUGUSTUS intron 108640 108775 0.91 - . Parent=g19.t1 *************** *** 626 **** ! chrI AUGUSTUS CDS 108776 108830 0.9 - 0 ID=g19.t1.cds;Parent=g19.t1 --- 626 ---- ! chrI AUGUSTUS CDS 108776 108830 0.91 - 0 ID=g19.t1.cds;Parent=g19.t1 *************** *** 628 **** ! chrI AUGUSTUS five_prime_utr 108831 108865 0.52 - . Parent=g19.t1 --- 628 ---- ! chrI AUGUSTUS five_prime_utr 108831 108865 0.46 - . Parent=g19.t1 *************** *** 645,646 **** ! chrI AUGUSTUS gene 109176 113257 0.33 + . ID=g20 ! chrI AUGUSTUS transcript 109176 113257 0.33 + . ID=g20.t1;Parent=g20 --- 645,646 ---- ! chrI AUGUSTUS gene 109176 113257 0.48 + . ID=g20 ! chrI AUGUSTUS transcript 109176 113257 0.48 + . ID=g20.t1;Parent=g20 *************** *** 648 **** ! chrI AUGUSTUS five_prime_utr 109176 109203 0.6 + . Parent=g20.t1 --- 648 ---- ! chrI AUGUSTUS five_prime_utr 109176 109203 0.69 + . Parent=g20.t1 *************** *** 650,656 **** ! chrI AUGUSTUS intron 109233 110133 0.99 + . Parent=g20.t1 ! chrI AUGUSTUS intron 110452 111386 0.99 + . Parent=g20.t1 ! chrI AUGUSTUS intron 111619 113228 0.61 + . Parent=g20.t1 ! chrI AUGUSTUS CDS 109204 109232 0.99 + 0 ID=g20.t1.cds;Parent=g20.t1 ! chrI AUGUSTUS CDS 110134 110451 0.99 + 1 ID=g20.t1.cds;Parent=g20.t1 ! chrI AUGUSTUS CDS 111387 111618 0.72 + 1 ID=g20.t1.cds;Parent=g20.t1 ! chrI AUGUSTUS CDS 113229 113231 0.61 + 0 ID=g20.t1.cds;Parent=g20.t1 --- 650,656 ---- ! chrI AUGUSTUS intron 109233 110133 0.98 + . Parent=g20.t1 ! chrI AUGUSTUS intron 110452 111386 1 + . Parent=g20.t1 ! chrI AUGUSTUS intron 111619 113228 0.64 + . Parent=g20.t1 ! chrI AUGUSTUS CDS 109204 109232 0.98 + 0 ID=g20.t1.cds;Parent=g20.t1 ! chrI AUGUSTUS CDS 110134 110451 1 + 1 ID=g20.t1.cds;Parent=g20.t1 ! chrI AUGUSTUS CDS 111387 111618 0.74 + 1 ID=g20.t1.cds;Parent=g20.t1 ! chrI AUGUSTUS CDS 113229 113231 0.64 + 0 ID=g20.t1.cds;Parent=g20.t1 *************** *** 658 **** ! chrI AUGUSTUS three_prime_utr 113232 113257 0.59 + . Parent=g20.t1 --- 658 ---- ! chrI AUGUSTUS three_prime_utr 113232 113257 0.64 + . Parent=g20.t1 *************** *** 676,677 **** ! chrI AUGUSTUS gene 113607 118555 0.08 - . ID=g21 ! chrI AUGUSTUS transcript 113607 118555 0.08 - . ID=g21.t1;Parent=g21 --- 676,677 ---- ! chrI AUGUSTUS gene 113607 118555 0.16 - . ID=g21 ! chrI AUGUSTUS transcript 113607 118555 0.16 - . ID=g21.t1;Parent=g21 *************** *** 679 **** ! chrI AUGUSTUS three_prime_utr 113607 113785 0.46 - . Parent=g21.t1 --- 679 ---- ! chrI AUGUSTUS three_prime_utr 113607 113785 0.43 - . Parent=g21.t1 *************** *** 684 **** ! chrI AUGUSTUS intron 116583 116742 0.66 - . Parent=g21.t1 --- 684 ---- ! chrI AUGUSTUS intron 116583 116742 0.71 - . Parent=g21.t1 *************** *** 686 **** ! chrI AUGUSTUS intron 117071 117122 0.91 - . Parent=g21.t1 --- 686 ---- ! chrI AUGUSTUS intron 117071 117122 0.92 - . Parent=g21.t1 *************** *** 693,694 **** ! chrI AUGUSTUS CDS 116743 116861 0.67 - 1 ID=g21.t1.cds;Parent=g21.t1 ! chrI AUGUSTUS CDS 116983 117070 0.91 - 2 ID=g21.t1.cds;Parent=g21.t1 --- 693,694 ---- ! chrI AUGUSTUS CDS 116743 116861 0.73 - 1 ID=g21.t1.cds;Parent=g21.t1 ! chrI AUGUSTUS CDS 116983 117070 0.92 - 2 ID=g21.t1.cds;Parent=g21.t1 *************** *** 699 **** ! chrI AUGUSTUS five_prime_utr 118521 118555 0.46 - . Parent=g21.t1 --- 699 ---- ! chrI AUGUSTUS five_prime_utr 118521 118555 0.53 - . Parent=g21.t1 *************** *** 719,720 **** ! chrI AUGUSTUS gene 128546 145973 0.28 + . ID=g22 ! chrI AUGUSTUS transcript 128546 145973 0.28 + . ID=g22.t1;Parent=g22 --- 719,720 ---- ! chrI AUGUSTUS gene 128546 145973 0.26 + . ID=g22 ! chrI AUGUSTUS transcript 128546 145973 0.26 + . ID=g22.t1;Parent=g22 *************** *** 722 **** ! chrI AUGUSTUS five_prime_utr 128546 128591 0.47 + . Parent=g22.t1 --- 722 ---- ! chrI AUGUSTUS five_prime_utr 128546 128591 0.37 + . Parent=g22.t1 *************** *** 724,726 **** ! chrI AUGUSTUS intron 128776 134788 0.5 + . Parent=g22.t1 ! chrI AUGUSTUS intron 134923 135049 1 + . Parent=g22.t1 ! chrI AUGUSTUS intron 135146 136532 1 + . Parent=g22.t1 --- 724,726 ---- ! chrI AUGUSTUS intron 128776 134788 0.44 + . Parent=g22.t1 ! chrI AUGUSTUS intron 134923 135049 0.99 + . Parent=g22.t1 ! chrI AUGUSTUS intron 135146 136532 0.99 + . Parent=g22.t1 *************** *** 730 **** ! chrI AUGUSTUS intron 143093 144879 0.87 + . Parent=g22.t1 --- 730 ---- ! chrI AUGUSTUS intron 143093 144879 0.84 + . Parent=g22.t1 *************** *** 732,733 **** ! chrI AUGUSTUS intron 145137 145688 0.99 + . Parent=g22.t1 ! chrI AUGUSTUS CDS 128592 128775 0.53 + 0 ID=g22.t1.cds;Parent=g22.t1 --- 732,733 ---- ! chrI AUGUSTUS intron 145137 145688 1 + . Parent=g22.t1 ! chrI AUGUSTUS CDS 128592 128775 0.45 + 0 ID=g22.t1.cds;Parent=g22.t1 *************** *** 735 **** ! chrI AUGUSTUS CDS 135050 135145 1 + 0 ID=g22.t1.cds;Parent=g22.t1 --- 735 ---- ! chrI AUGUSTUS CDS 135050 135145 0.99 + 0 ID=g22.t1.cds;Parent=g22.t1 *************** *** 741 **** ! chrI AUGUSTUS CDS 145041 145136 0.99 + 0 ID=g22.t1.cds;Parent=g22.t1 --- 741 ---- ! chrI AUGUSTUS CDS 145041 145136 1 + 0 ID=g22.t1.cds;Parent=g22.t1 *************** *** 744 **** ! chrI AUGUSTUS three_prime_utr 145764 145973 0.69 + . Parent=g22.t1 --- 744 ---- ! chrI AUGUSTUS three_prime_utr 145764 145973 0.76 + . Parent=g22.t1 *************** *** 767,768 **** ! chrI AUGUSTUS gene 149016 149456 0.12 + . ID=g23 ! chrI AUGUSTUS transcript 149016 149456 0.12 + . ID=g23.t1;Parent=g23 --- 767,768 ---- ! chrI AUGUSTUS gene 149016 149456 0.11 + . ID=g23 ! chrI AUGUSTUS transcript 149016 149456 0.11 + . ID=g23.t1;Parent=g23 *************** *** 770 **** ! chrI AUGUSTUS five_prime_utr 149016 149045 0.31 + . Parent=g23.t1 --- 770 ---- ! chrI AUGUSTUS five_prime_utr 149016 149045 0.24 + . Parent=g23.t1 *************** *** 773,774 **** ! chrI AUGUSTUS CDS 149046 149254 0.76 + 0 ID=g23.t1.cds;Parent=g23.t1 ! chrI AUGUSTUS CDS 149306 149396 0.97 + 1 ID=g23.t1.cds;Parent=g23.t1 --- 773,774 ---- ! chrI AUGUSTUS CDS 149046 149254 0.65 + 0 ID=g23.t1.cds;Parent=g23.t1 ! chrI AUGUSTUS CDS 149306 149396 0.96 + 1 ID=g23.t1.cds;Parent=g23.t1 *************** *** 776 **** ! chrI AUGUSTUS three_prime_utr 149397 149456 0.36 + . Parent=g23.t1 --- 776 ---- ! chrI AUGUSTUS three_prime_utr 149397 149456 0.44 + . Parent=g23.t1 *************** *** 791,792 **** ! chrI AUGUSTUS gene 149852 151305 0.1 - . ID=g24 ! chrI AUGUSTUS transcript 149852 151305 0.1 - . ID=g24.t1;Parent=g24 --- 791,792 ---- ! chrI AUGUSTUS gene 149852 151305 0.12 - . ID=g24 ! chrI AUGUSTUS transcript 149852 151305 0.12 - . ID=g24.t1;Parent=g24 *************** *** 794 **** ! chrI AUGUSTUS three_prime_utr 149852 149905 0.44 - . Parent=g24.t1 --- 794 ---- ! chrI AUGUSTUS three_prime_utr 149852 149905 0.35 - . Parent=g24.t1 *************** *** 796,800 **** ! chrI AUGUSTUS intron 150072 150693 0.8 - . Parent=g24.t1 ! chrI AUGUSTUS intron 150978 151235 0.6 - . Parent=g24.t1 ! chrI AUGUSTUS CDS 149906 150071 0.8 - 1 ID=g24.t1.cds;Parent=g24.t1 ! chrI AUGUSTUS CDS 150694 150977 0.66 - 0 ID=g24.t1.cds;Parent=g24.t1 ! chrI AUGUSTUS CDS 151236 151238 0.6 - 0 ID=g24.t1.cds;Parent=g24.t1 --- 796,800 ---- ! chrI AUGUSTUS intron 150072 150693 0.81 - . Parent=g24.t1 ! chrI AUGUSTUS intron 150978 151235 0.59 - . Parent=g24.t1 ! chrI AUGUSTUS CDS 149906 150071 0.81 - 1 ID=g24.t1.cds;Parent=g24.t1 ! chrI AUGUSTUS CDS 150694 150977 0.69 - 0 ID=g24.t1.cds;Parent=g24.t1 ! chrI AUGUSTUS CDS 151236 151238 0.59 - 0 ID=g24.t1.cds;Parent=g24.t1 *************** *** 802 **** ! chrI AUGUSTUS five_prime_utr 151239 151305 0.17 - . Parent=g24.t1 --- 802 ---- ! chrI AUGUSTUS five_prime_utr 151239 151305 0.28 - . Parent=g24.t1 *************** *** 819,820 **** ! chrI AUGUSTUS gene 152796 156161 0.06 + . ID=g25 ! chrI AUGUSTUS transcript 152796 156161 0.06 + . ID=g25.t1;Parent=g25 --- 819,820 ---- ! chrI AUGUSTUS gene 152796 156161 0.07 + . ID=g25 ! chrI AUGUSTUS transcript 152796 156161 0.07 + . ID=g25.t1;Parent=g25 *************** *** 822 **** ! chrI AUGUSTUS five_prime_utr 152796 152986 0.21 + . Parent=g25.t1 --- 822 ---- ! chrI AUGUSTUS five_prime_utr 152796 152986 0.25 + . Parent=g25.t1 *************** *** 827 **** ! chrI AUGUSTUS three_prime_utr 155685 156161 0.27 + . Parent=g25.t1 --- 827 ---- ! chrI AUGUSTUS three_prime_utr 155685 156161 0.25 + . Parent=g25.t1 *************** *** 843,844 **** ! chrI AUGUSTUS gene 160036 166396 0.23 + . ID=g26 ! chrI AUGUSTUS transcript 160036 166396 0.23 + . ID=g26.t1;Parent=g26 --- 843,844 ---- ! chrI AUGUSTUS gene 160036 166396 0.33 + . ID=g26 ! chrI AUGUSTUS transcript 160036 166396 0.33 + . ID=g26.t1;Parent=g26 *************** *** 846 **** ! chrI AUGUSTUS five_prime_utr 160036 160066 0.37 + . Parent=g26.t1 --- 846 ---- ! chrI AUGUSTUS five_prime_utr 160036 160066 0.42 + . Parent=g26.t1 *************** *** 849,850 **** ! chrI AUGUSTUS intron 163292 164019 0.95 + . Parent=g26.t1 ! chrI AUGUSTUS intron 164105 164827 0.89 + . Parent=g26.t1 --- 849,850 ---- ! chrI AUGUSTUS intron 163292 164019 0.98 + . Parent=g26.t1 ! chrI AUGUSTUS intron 164105 164827 0.94 + . Parent=g26.t1 *************** *** 853 **** ! chrI AUGUSTUS CDS 160067 160201 0.91 + 0 ID=g26.t1.cds;Parent=g26.t1 --- 853 ---- ! chrI AUGUSTUS CDS 160067 160201 0.86 + 0 ID=g26.t1.cds;Parent=g26.t1 *************** *** 855,856 **** ! chrI AUGUSTUS CDS 164020 164104 0.95 + 0 ID=g26.t1.cds;Parent=g26.t1 ! chrI AUGUSTUS CDS 164828 164986 0.9 + 2 ID=g26.t1.cds;Parent=g26.t1 --- 855,856 ---- ! chrI AUGUSTUS CDS 164020 164104 0.98 + 0 ID=g26.t1.cds;Parent=g26.t1 ! chrI AUGUSTUS CDS 164828 164986 0.95 + 2 ID=g26.t1.cds;Parent=g26.t1 *************** *** 860 **** ! chrI AUGUSTUS three_prime_utr 166344 166396 0.8 + . Parent=g26.t1 --- 860 ---- ! chrI AUGUSTUS three_prime_utr 166344 166396 0.81 + . Parent=g26.t1 *************** *** 877,878 **** ! chrI AUGUSTUS gene 168006 176120 0.02 + . ID=g27 ! chrI AUGUSTUS transcript 168006 176120 0.02 + . ID=g27.t1;Parent=g27 --- 877,878 ---- ! chrI AUGUSTUS gene 168006 176120 0.05 + . ID=g27 ! chrI AUGUSTUS transcript 168006 176120 0.05 + . ID=g27.t1;Parent=g27 *************** *** 880 **** ! chrI AUGUSTUS five_prime_utr 168006 168112 0.23 + . Parent=g27.t1 --- 880 ---- ! chrI AUGUSTUS five_prime_utr 168006 168112 0.33 + . Parent=g27.t1 *************** *** 882 **** ! chrI AUGUSTUS intron 168434 172004 0.73 + . Parent=g27.t1 --- 882 ---- ! chrI AUGUSTUS intron 168434 172004 0.78 + . Parent=g27.t1 *************** *** 885,888 **** ! chrI AUGUSTUS intron 174024 174889 0.83 + . Parent=g27.t1 ! chrI AUGUSTUS intron 174986 175961 0.3 + . Parent=g27.t1 ! chrI AUGUSTUS CDS 168113 168433 0.78 + 0 ID=g27.t1.cds;Parent=g27.t1 ! chrI AUGUSTUS CDS 172005 172171 0.73 + 0 ID=g27.t1.cds;Parent=g27.t1 --- 885,888 ---- ! chrI AUGUSTUS intron 174024 174889 0.81 + . Parent=g27.t1 ! chrI AUGUSTUS intron 174986 175961 0.36 + . Parent=g27.t1 ! chrI AUGUSTUS CDS 168113 168433 0.83 + 0 ID=g27.t1.cds;Parent=g27.t1 ! chrI AUGUSTUS CDS 172005 172171 0.78 + 0 ID=g27.t1.cds;Parent=g27.t1 *************** *** 890,892 **** ! chrI AUGUSTUS CDS 173926 174023 0.83 + 2 ID=g27.t1.cds;Parent=g27.t1 ! chrI AUGUSTUS CDS 174890 174985 0.67 + 0 ID=g27.t1.cds;Parent=g27.t1 ! chrI AUGUSTUS CDS 175962 175964 0.3 + 0 ID=g27.t1.cds;Parent=g27.t1 --- 890,892 ---- ! chrI AUGUSTUS CDS 173926 174023 0.81 + 2 ID=g27.t1.cds;Parent=g27.t1 ! chrI AUGUSTUS CDS 174890 174985 0.74 + 0 ID=g27.t1.cds;Parent=g27.t1 ! chrI AUGUSTUS CDS 175962 175964 0.36 + 0 ID=g27.t1.cds;Parent=g27.t1 *************** *** 894 **** ! chrI AUGUSTUS three_prime_utr 175965 176120 0.11 + . Parent=g27.t1 --- 894 ---- ! chrI AUGUSTUS three_prime_utr 175965 176120 0.16 + . Parent=g27.t1 *************** *** 911,912 **** ! chrI AUGUSTUS gene 177676 180252 0.44 + . ID=g28 ! chrI AUGUSTUS transcript 177676 180252 0.44 + . ID=g28.t1;Parent=g28 --- 911,912 ---- ! chrI AUGUSTUS gene 177676 180252 0.36 + . ID=g28 ! chrI AUGUSTUS transcript 177676 180252 0.36 + . ID=g28.t1;Parent=g28 *************** *** 914,915 **** ! chrI AUGUSTUS five_prime_utr 177676 177708 0.75 + . Parent=g28.t1 ! chrI AUGUSTUS five_prime_utr 179455 179481 0.79 + . Parent=g28.t1 --- 914,915 ---- ! chrI AUGUSTUS five_prime_utr 177676 177708 0.73 + . Parent=g28.t1 ! chrI AUGUSTUS five_prime_utr 179455 179481 0.86 + . Parent=g28.t1 *************** *** 919 **** ! chrI AUGUSTUS three_prime_utr 179884 180252 0.73 + . Parent=g28.t1 --- 919 ---- ! chrI AUGUSTUS three_prime_utr 179884 180252 0.61 + . Parent=g28.t1 *************** *** 936,937 **** ! chrI AUGUSTUS gene 185697 186101 0.22 + . ID=g29 ! chrI AUGUSTUS transcript 185697 186101 0.22 + . ID=g29.t1;Parent=g29 --- 936,937 ---- ! chrI AUGUSTUS gene 185697 186101 0.19 + . ID=g29 ! chrI AUGUSTUS transcript 185697 186101 0.19 + . ID=g29.t1;Parent=g29 *************** *** 939 **** ! chrI AUGUSTUS five_prime_utr 185697 185757 0.9 + . Parent=g29.t1 --- 939 ---- ! chrI AUGUSTUS five_prime_utr 185697 185757 0.96 + . Parent=g29.t1 *************** *** 941,943 **** ! chrI AUGUSTUS intron 185920 185985 0.6 + . Parent=g29.t1 ! chrI AUGUSTUS CDS 185758 185919 0.99 + 0 ID=g29.t1.cds;Parent=g29.t1 ! chrI AUGUSTUS CDS 185986 186030 0.6 + 0 ID=g29.t1.cds;Parent=g29.t1 --- 941,943 ---- ! chrI AUGUSTUS intron 185920 185985 0.64 + . Parent=g29.t1 ! chrI AUGUSTUS CDS 185758 185919 1 + 0 ID=g29.t1.cds;Parent=g29.t1 ! chrI AUGUSTUS CDS 185986 186030 0.64 + 0 ID=g29.t1.cds;Parent=g29.t1 *************** *** 945 **** ! chrI AUGUSTUS three_prime_utr 186031 186101 0.24 + . Parent=g29.t1 --- 945 ---- ! chrI AUGUSTUS three_prime_utr 186031 186101 0.2 + . Parent=g29.t1 *************** *** 959,960 **** ! chrI AUGUSTUS gene 192317 209633 0.05 + . ID=g30 ! chrI AUGUSTUS transcript 192317 209633 0.05 + . ID=g30.t1;Parent=g30 --- 959,960 ---- ! chrI AUGUSTUS gene 192317 209633 0.11 + . ID=g30 ! chrI AUGUSTUS transcript 192317 209633 0.11 + . ID=g30.t1;Parent=g30 *************** *** 962 **** ! chrI AUGUSTUS five_prime_utr 192317 192428 0.41 + . Parent=g30.t1 --- 962 ---- ! chrI AUGUSTUS five_prime_utr 192317 192428 0.43 + . Parent=g30.t1 *************** *** 964 **** ! chrI AUGUSTUS intron 192749 192844 0.93 + . Parent=g30.t1 --- 964 ---- ! chrI AUGUSTUS intron 192749 192844 0.85 + . Parent=g30.t1 *************** *** 966,973 **** ! chrI AUGUSTUS intron 196617 197189 0.54 + . Parent=g30.t1 ! chrI AUGUSTUS intron 197286 200010 0.99 + . Parent=g30.t1 ! chrI AUGUSTUS intron 200151 201730 0.97 + . Parent=g30.t1 ! chrI AUGUSTUS intron 202170 203574 0.99 + . Parent=g30.t1 ! chrI AUGUSTUS intron 203866 204925 1 + . Parent=g30.t1 ! chrI AUGUSTUS intron 205310 207320 0.99 + . Parent=g30.t1 ! chrI AUGUSTUS intron 207840 209094 1 + . Parent=g30.t1 ! chrI AUGUSTUS CDS 192429 192748 0.93 + 0 ID=g30.t1.cds;Parent=g30.t1 --- 966,973 ---- ! chrI AUGUSTUS intron 196617 197189 0.61 + . Parent=g30.t1 ! chrI AUGUSTUS intron 197286 200010 1 + . Parent=g30.t1 ! chrI AUGUSTUS intron 200151 201730 0.98 + . Parent=g30.t1 ! chrI AUGUSTUS intron 202170 203574 1 + . Parent=g30.t1 ! chrI AUGUSTUS intron 203866 204925 0.98 + . Parent=g30.t1 ! chrI AUGUSTUS intron 205310 207320 1 + . Parent=g30.t1 ! chrI AUGUSTUS intron 207840 209094 0.98 + . Parent=g30.t1 ! chrI AUGUSTUS CDS 192429 192748 0.85 + 0 ID=g30.t1.cds;Parent=g30.t1 *************** *** 975,980 **** ! chrI AUGUSTUS CDS 195400 196616 0.54 + 2 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 197190 197285 0.99 + 0 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 200011 200150 0.97 + 0 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 201731 202169 0.99 + 1 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 203575 203865 0.99 + 0 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 204926 205309 1 + 0 ID=g30.t1.cds;Parent=g30.t1 --- 975,980 ---- ! chrI AUGUSTUS CDS 195400 196616 0.61 + 2 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 197190 197285 1 + 0 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 200011 200150 0.98 + 0 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 201731 202169 1 + 1 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 203575 203865 1 + 0 ID=g30.t1.cds;Parent=g30.t1 ! chrI AUGUSTUS CDS 204926 205309 0.98 + 0 ID=g30.t1.cds;Parent=g30.t1 *************** *** 984 **** ! chrI AUGUSTUS three_prime_utr 209335 209633 0.29 + . Parent=g30.t1 --- 984 ---- ! chrI AUGUSTUS three_prime_utr 209335 209633 0.41 + . Parent=g30.t1 *************** *** 1012,1013 **** ! chrI AUGUSTUS gene 216127 219441 0.09 + . ID=g31 ! chrI AUGUSTUS transcript 216127 219441 0.09 + . ID=g31.t1;Parent=g31 --- 1012,1013 ---- ! chrI AUGUSTUS gene 216127 219441 0.12 + . ID=g31 ! chrI AUGUSTUS transcript 216127 219441 0.12 + . ID=g31.t1;Parent=g31 *************** *** 1015 **** ! chrI AUGUSTUS five_prime_utr 216127 216217 0.3 + . Parent=g31.t1 --- 1015 ---- ! chrI AUGUSTUS five_prime_utr 216127 216217 0.29 + . Parent=g31.t1 *************** *** 1017 **** ! chrI AUGUSTUS intron 216285 217089 0.41 + . Parent=g31.t1 --- 1017 ---- ! chrI AUGUSTUS intron 216285 217089 0.42 + . Parent=g31.t1 *************** *** 1020,1022 **** ! chrI AUGUSTUS intron 219166 219217 0.6 + . Parent=g31.t1 ! chrI AUGUSTUS CDS 216218 216284 0.42 + 0 ID=g31.t1.cds;Parent=g31.t1 ! chrI AUGUSTUS CDS 217090 217193 0.98 + 2 ID=g31.t1.cds;Parent=g31.t1 --- 1020,1022 ---- ! chrI AUGUSTUS intron 219166 219217 0.72 + . Parent=g31.t1 ! chrI AUGUSTUS CDS 216218 216284 0.45 + 0 ID=g31.t1.cds;Parent=g31.t1 ! chrI AUGUSTUS CDS 217090 217193 0.93 + 2 ID=g31.t1.cds;Parent=g31.t1 *************** *** 1024,1025 **** ! chrI AUGUSTUS CDS 218964 219165 0.99 + 1 ID=g31.t1.cds;Parent=g31.t1 ! chrI AUGUSTUS CDS 219218 219418 0.6 + 0 ID=g31.t1.cds;Parent=g31.t1 --- 1024,1025 ---- ! chrI AUGUSTUS CDS 218964 219165 1 + 1 ID=g31.t1.cds;Parent=g31.t1 ! chrI AUGUSTUS CDS 219218 219418 0.72 + 0 ID=g31.t1.cds;Parent=g31.t1 *************** *** 1027 **** ! chrI AUGUSTUS three_prime_utr 219419 219441 0.45 + . Parent=g31.t1 --- 1027 ---- ! chrI AUGUSTUS three_prime_utr 219419 219441 0.5 + . Parent=g31.t1 *************** *** 1045,1046 **** ! chrI AUGUSTUS gene 219479 222306 0.35 - . ID=g32 ! chrI AUGUSTUS transcript 219479 222306 0.35 - . ID=g32.t1;Parent=g32 --- 1045,1046 ---- ! chrI AUGUSTUS gene 219479 222306 0.36 - . ID=g32 ! chrI AUGUSTUS transcript 219479 222306 0.36 - . ID=g32.t1;Parent=g32 *************** *** 1048 **** ! chrI AUGUSTUS three_prime_utr 219479 219546 0.88 - . Parent=g32.t1 --- 1048 ---- ! chrI AUGUSTUS three_prime_utr 219479 219546 0.87 - . Parent=g32.t1 *************** *** 1051 **** ! chrI AUGUSTUS intron 220930 222082 1 - . Parent=g32.t1 --- 1051 ---- ! chrI AUGUSTUS intron 220930 222082 0.99 - . Parent=g32.t1 *************** *** 1055,1056 **** ! chrI AUGUSTUS CDS 222083 222201 1 - 2 ID=g32.t1.cds;Parent=g32.t1 ! chrI AUGUSTUS CDS 222243 222264 0.4 - 0 ID=g32.t1.cds;Parent=g32.t1 --- 1055,1056 ---- ! chrI AUGUSTUS CDS 222083 222201 0.99 - 2 ID=g32.t1.cds;Parent=g32.t1 ! chrI AUGUSTUS CDS 222243 222264 0.41 - 0 ID=g32.t1.cds;Parent=g32.t1 *************** *** 1058 **** ! chrI AUGUSTUS five_prime_utr 222265 222306 0.4 - . Parent=g32.t1 --- 1058 ---- ! chrI AUGUSTUS five_prime_utr 222265 222306 0.39 - . Parent=g32.t1 *************** *** 1075,1076 **** ! chrI AUGUSTUS gene 223306 233186 0.12 - . ID=g33 ! chrI AUGUSTUS transcript 223306 233186 0.12 - . ID=g33.t1;Parent=g33 --- 1075,1076 ---- ! chrI AUGUSTUS gene 223306 233186 0.16 - . ID=g33 ! chrI AUGUSTUS transcript 223306 233186 0.16 - . ID=g33.t1;Parent=g33 *************** *** 1078 **** ! chrI AUGUSTUS three_prime_utr 223306 223353 0.99 - . Parent=g33.t1 --- 1078 ---- ! chrI AUGUSTUS three_prime_utr 223306 223353 0.98 - . Parent=g33.t1 *************** *** 1080,1081 **** ! chrI AUGUSTUS intron 223572 223629 0.96 - . Parent=g33.t1 ! chrI AUGUSTUS intron 223729 224301 0.72 - . Parent=g33.t1 --- 1080,1081 ---- ! chrI AUGUSTUS intron 223572 223629 0.97 - . Parent=g33.t1 ! chrI AUGUSTUS intron 223729 224301 0.79 - . Parent=g33.t1 *************** *** 1083,1085 **** ! chrI AUGUSTUS intron 224890 225617 0.99 - . Parent=g33.t1 ! chrI AUGUSTUS intron 226412 226800 0.67 - . Parent=g33.t1 ! chrI AUGUSTUS intron 226945 226991 0.52 - . Parent=g33.t1 --- 1083,1085 ---- ! chrI AUGUSTUS intron 224890 225617 1 - . Parent=g33.t1 ! chrI AUGUSTUS intron 226412 226800 0.8 - . Parent=g33.t1 ! chrI AUGUSTUS intron 226945 226991 0.51 - . Parent=g33.t1 *************** *** 1090 **** ! chrI AUGUSTUS intron 230413 230466 0.97 - . Parent=g33.t1 --- 1090 ---- ! chrI AUGUSTUS intron 230413 230466 0.96 - . Parent=g33.t1 *************** *** 1094 **** ! chrI AUGUSTUS intron 231596 232847 0.88 - . Parent=g33.t1 --- 1094 ---- ! chrI AUGUSTUS intron 231596 232847 0.87 - . Parent=g33.t1 *************** *** 1097,1098 **** ! chrI AUGUSTUS CDS 223630 223728 0.96 - 2 ID=g33.t1.cds;Parent=g33.t1 ! chrI AUGUSTUS CDS 224302 224476 0.75 - 0 ID=g33.t1.cds;Parent=g33.t1 --- 1097,1098 ---- ! chrI AUGUSTUS CDS 223630 223728 0.97 - 2 ID=g33.t1.cds;Parent=g33.t1 ! chrI AUGUSTUS CDS 224302 224476 0.82 - 0 ID=g33.t1.cds;Parent=g33.t1 *************** *** 1100,1102 **** ! chrI AUGUSTUS CDS 225618 226411 0.99 - 0 ID=g33.t1.cds;Parent=g33.t1 ! chrI AUGUSTUS CDS 226801 226944 0.67 - 0 ID=g33.t1.cds;Parent=g33.t1 ! chrI AUGUSTUS CDS 226992 227111 0.52 - 0 ID=g33.t1.cds;Parent=g33.t1 --- 1100,1102 ---- ! chrI AUGUSTUS CDS 225618 226411 1 - 0 ID=g33.t1.cds;Parent=g33.t1 ! chrI AUGUSTUS CDS 226801 226944 0.8 - 0 ID=g33.t1.cds;Parent=g33.t1 ! chrI AUGUSTUS CDS 226992 227111 0.51 - 0 ID=g33.t1.cds;Parent=g33.t1 *************** *** 1106 **** ! chrI AUGUSTUS CDS 230294 230412 1 - 2 ID=g33.t1.cds;Parent=g33.t1 --- 1106 ---- ! chrI AUGUSTUS CDS 230294 230412 0.99 - 2 ID=g33.t1.cds;Parent=g33.t1 *************** *** 1109 **** ! chrI AUGUSTUS CDS 231185 231432 0.99 - 2 ID=g33.t1.cds;Parent=g33.t1 --- 1109 ---- ! chrI AUGUSTUS CDS 231185 231432 1 - 2 ID=g33.t1.cds;Parent=g33.t1 *************** *** 1111 **** ! chrI AUGUSTUS CDS 232848 233014 0.88 - 0 ID=g33.t1.cds;Parent=g33.t1 --- 1111 ---- ! chrI AUGUSTUS CDS 232848 233014 0.87 - 0 ID=g33.t1.cds;Parent=g33.t1 *************** *** 1114 **** ! chrI AUGUSTUS five_prime_utr 233101 233186 0.51 - . Parent=g33.t1 --- 1114 ---- ! chrI AUGUSTUS five_prime_utr 233101 233186 0.46 - . Parent=g33.t1 *************** *** 1141,1142 **** ! chrI AUGUSTUS gene 233745 234876 0.7 - . ID=g34 ! chrI AUGUSTUS transcript 233745 234876 0.7 - . ID=g34.t1;Parent=g34 --- 1141,1142 ---- ! chrI AUGUSTUS gene 233745 234876 0.62 - . ID=g34 ! chrI AUGUSTUS transcript 233745 234876 0.62 - . ID=g34.t1;Parent=g34 *************** *** 1144 **** ! chrI AUGUSTUS three_prime_utr 233745 233895 0.76 - . Parent=g34.t1 --- 1144 ---- ! chrI AUGUSTUS three_prime_utr 233745 233895 0.73 - . Parent=g34.t1 *************** *** 1146 **** ! chrI AUGUSTUS intron 233977 234055 0.95 - . Parent=g34.t1 --- 1146 ---- ! chrI AUGUSTUS intron 233977 234055 0.93 - . Parent=g34.t1 *************** *** 1150 **** ! chrI AUGUSTUS CDS 233896 233976 0.95 - 0 ID=g34.t1.cds;Parent=g34.t1 --- 1150 ---- ! chrI AUGUSTUS CDS 233896 233976 0.93 - 0 ID=g34.t1.cds;Parent=g34.t1 *************** *** 1156 **** ! chrI AUGUSTUS five_prime_utr 234848 234876 0.91 - . Parent=g34.t1 --- 1156 ---- ! chrI AUGUSTUS five_prime_utr 234848 234876 0.83 - . Parent=g34.t1 *************** *** 1172,1173 **** ! chrI AUGUSTUS gene 235606 241206 0.72 - . ID=g35 ! chrI AUGUSTUS transcript 235606 241206 0.72 - . ID=g35.t1;Parent=g35 --- 1172,1173 ---- ! chrI AUGUSTUS gene 235606 241206 0.81 - . ID=g35 ! chrI AUGUSTUS transcript 235606 241206 0.81 - . ID=g35.t1;Parent=g35 *************** *** 1175 **** ! chrI AUGUSTUS three_prime_utr 235606 235641 0.95 - . Parent=g35.t1 --- 1175 ---- ! chrI AUGUSTUS three_prime_utr 235606 235641 0.94 - . Parent=g35.t1 *************** *** 1195 **** ! chrI AUGUSTUS five_prime_utr 241073 241206 0.77 - . Parent=g35.t1 --- 1195 ---- ! chrI AUGUSTUS five_prime_utr 241073 241206 0.86 - . Parent=g35.t1 *************** *** 1223,1224 **** ! chrI AUGUSTUS gene 242107 247297 0.15 + . ID=g36 ! chrI AUGUSTUS transcript 242107 247297 0.15 + . ID=g36.t1;Parent=g36 --- 1223,1224 ---- ! chrI AUGUSTUS gene 242107 247297 0.1 + . ID=g36 ! chrI AUGUSTUS transcript 242107 247297 0.1 + . ID=g36.t1;Parent=g36 *************** *** 1226 **** ! chrI AUGUSTUS five_prime_utr 242107 242230 0.25 + . Parent=g36.t1 --- 1226 ---- ! chrI AUGUSTUS five_prime_utr 242107 242230 0.28 + . Parent=g36.t1 *************** *** 1228,1231 **** ! chrI AUGUSTUS intron 242365 243403 0.94 + . Parent=g36.t1 ! chrI AUGUSTUS intron 243594 244085 0.91 + . Parent=g36.t1 ! chrI AUGUSTUS intron 244206 244358 0.96 + . Parent=g36.t1 ! chrI AUGUSTUS intron 244560 244776 0.83 + . Parent=g36.t1 --- 1228,1231 ---- ! chrI AUGUSTUS intron 242365 243403 0.88 + . Parent=g36.t1 ! chrI AUGUSTUS intron 243594 244085 0.88 + . Parent=g36.t1 ! chrI AUGUSTUS intron 244206 244358 0.97 + . Parent=g36.t1 ! chrI AUGUSTUS intron 244560 244776 0.81 + . Parent=g36.t1 *************** *** 1233 **** ! chrI AUGUSTUS intron 245647 246140 1 + . Parent=g36.t1 --- 1233 ---- ! chrI AUGUSTUS intron 245647 246140 0.99 + . Parent=g36.t1 *************** *** 1236,1238 **** ! chrI AUGUSTUS CDS 243404 243593 0.88 + 1 ID=g36.t1.cds;Parent=g36.t1 ! chrI AUGUSTUS CDS 244086 244205 0.98 + 0 ID=g36.t1.cds;Parent=g36.t1 ! chrI AUGUSTUS CDS 244359 244559 0.92 + 0 ID=g36.t1.cds;Parent=g36.t1 --- 1236,1238 ---- ! chrI AUGUSTUS CDS 243404 243593 0.79 + 1 ID=g36.t1.cds;Parent=g36.t1 ! chrI AUGUSTUS CDS 244086 244205 0.97 + 0 ID=g36.t1.cds;Parent=g36.t1 ! chrI AUGUSTUS CDS 244359 244559 0.91 + 0 ID=g36.t1.cds;Parent=g36.t1 *************** *** 1240 **** ! chrI AUGUSTUS CDS 245527 245646 1 + 0 ID=g36.t1.cds;Parent=g36.t1 --- 1240 ---- ! chrI AUGUSTUS CDS 245527 245646 0.99 + 0 ID=g36.t1.cds;Parent=g36.t1 *************** *** 1242 **** ! chrI AUGUSTUS CDS 247153 247224 0.99 + 0 ID=g36.t1.cds;Parent=g36.t1 --- 1242 ---- ! chrI AUGUSTUS CDS 247153 247224 1 + 0 ID=g36.t1.cds;Parent=g36.t1 *************** *** 1244 **** ! chrI AUGUSTUS three_prime_utr 247225 247297 0.67 + . Parent=g36.t1 --- 1244 ---- ! chrI AUGUSTUS three_prime_utr 247225 247297 0.66 + . Parent=g36.t1 *************** *** 1264,1265 **** ! chrI AUGUSTUS gene 247367 254902 0.06 + . ID=g37 ! chrI AUGUSTUS transcript 247367 254902 0.06 + . ID=g37.t1;Parent=g37 --- 1264,1265 ---- ! chrI AUGUSTUS gene 247367 254902 0.02 + . ID=g37 ! chrI AUGUSTUS transcript 247367 254902 0.02 + . ID=g37.t1;Parent=g37 *************** *** 1267,1268 **** ! chrI AUGUSTUS five_prime_utr 247367 247473 0.2 + . Parent=g37.t1 ! chrI AUGUSTUS five_prime_utr 250132 250157 0.86 + . Parent=g37.t1 --- 1267,1268 ---- ! chrI AUGUSTUS five_prime_utr 247367 247473 0.12 + . Parent=g37.t1 ! chrI AUGUSTUS five_prime_utr 250132 250157 0.75 + . Parent=g37.t1 *************** *** 1270,1274 **** ! chrI AUGUSTUS intron 250213 250271 0.98 + . Parent=g37.t1 ! chrI AUGUSTUS intron 250390 250711 0.95 + . Parent=g37.t1 ! chrI AUGUSTUS intron 250838 251467 0.98 + . Parent=g37.t1 ! chrI AUGUSTUS intron 251605 252339 0.99 + . Parent=g37.t1 ! chrI AUGUSTUS intron 252684 252882 1 + . Parent=g37.t1 --- 1270,1274 ---- ! chrI AUGUSTUS intron 250213 250271 1 + . Parent=g37.t1 ! chrI AUGUSTUS intron 250390 250711 0.93 + . Parent=g37.t1 ! chrI AUGUSTUS intron 250838 251467 0.93 + . Parent=g37.t1 ! chrI AUGUSTUS intron 251605 252339 1 + . Parent=g37.t1 ! chrI AUGUSTUS intron 252684 252882 0.99 + . Parent=g37.t1 *************** *** 1277 **** ! chrI AUGUSTUS intron 253850 253950 1 + . Parent=g37.t1 --- 1277 ---- ! chrI AUGUSTUS intron 253850 253950 0.99 + . Parent=g37.t1 *************** *** 1280,1285 **** ! chrI AUGUSTUS intron 254584 254695 1 + . Parent=g37.t1 ! chrI AUGUSTUS CDS 250158 250212 0.85 + 0 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 250272 250389 0.97 + 2 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 250712 250837 0.97 + 1 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 251468 251604 0.99 + 1 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 252340 252683 0.83 + 2 ID=g37.t1.cds;Parent=g37.t1 --- 1280,1285 ---- ! chrI AUGUSTUS intron 254584 254695 0.99 + . Parent=g37.t1 ! chrI AUGUSTUS CDS 250158 250212 0.76 + 0 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 250272 250389 1 + 2 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 250712 250837 0.93 + 1 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 251468 251604 1 + 1 ID=g37.t1.cds;Parent=g37.t1 ! chrI AUGUSTUS CDS 252340 252683 0.87 + 2 ID=g37.t1.cds;Parent=g37.t1 *************** *** 1288 **** ! chrI AUGUSTUS CDS 253698 253849 1 + 2 ID=g37.t1.cds;Parent=g37.t1 --- 1288 ---- ! chrI AUGUSTUS CDS 253698 253849 0.99 + 2 ID=g37.t1.cds;Parent=g37.t1 *************** *** 1291 **** ! chrI AUGUSTUS CDS 254411 254583 1 + 2 ID=g37.t1.cds;Parent=g37.t1 --- 1291 ---- ! chrI AUGUSTUS CDS 254411 254583 0.99 + 2 ID=g37.t1.cds;Parent=g37.t1 *************** *** 1294 **** ! chrI AUGUSTUS three_prime_utr 254801 254902 0.47 + . Parent=g37.t1 --- 1294 ---- ! chrI AUGUSTUS three_prime_utr 254801 254902 0.45 + . Parent=g37.t1 *************** *** 1315,1316 **** ! chrI AUGUSTUS gene 255928 272896 0.06 - . ID=g38 ! chrI AUGUSTUS transcript 255928 272896 0.06 - . ID=g38.t1;Parent=g38 --- 1315,1316 ---- ! chrI AUGUSTUS gene 255928 272896 0.08 - . ID=g38 ! chrI AUGUSTUS transcript 255928 272896 0.08 - . ID=g38.t1;Parent=g38 *************** *** 1318 **** ! chrI AUGUSTUS three_prime_utr 255928 256152 0.62 - . Parent=g38.t1 --- 1318 ---- ! chrI AUGUSTUS three_prime_utr 255928 256152 0.61 - . Parent=g38.t1 *************** *** 1321 **** ! chrI AUGUSTUS intron 257409 258591 0.6 - . Parent=g38.t1 --- 1321 ---- ! chrI AUGUSTUS intron 257409 258591 0.67 - . Parent=g38.t1 *************** *** 1324,1325 **** ! chrI AUGUSTUS intron 259218 259256 0.96 - . Parent=g38.t1 ! chrI AUGUSTUS intron 259521 260370 0.99 - . Parent=g38.t1 --- 1324,1325 ---- ! chrI AUGUSTUS intron 259218 259256 0.91 - . Parent=g38.t1 ! chrI AUGUSTUS intron 259521 260370 1 - . Parent=g38.t1 *************** *** 1330 **** ! chrI AUGUSTUS intron 262439 262480 0.97 - . Parent=g38.t1 --- 1330 ---- ! chrI AUGUSTUS intron 262439 262480 0.98 - . Parent=g38.t1 *************** *** 1332 **** ! chrI AUGUSTUS intron 264453 264523 0.98 - . Parent=g38.t1 --- 1332 ---- ! chrI AUGUSTUS intron 264453 264523 0.99 - . Parent=g38.t1 *************** *** 1334 **** ! chrI AUGUSTUS intron 264846 265487 0.98 - . Parent=g38.t1 --- 1334 ---- ! chrI AUGUSTUS intron 264846 265487 0.95 - . Parent=g38.t1 *************** *** 1343 **** ! chrI AUGUSTUS intron 268932 268976 0.99 - . Parent=g38.t1 --- 1343 ---- ! chrI AUGUSTUS intron 268932 268976 1 - . Parent=g38.t1 *************** *** 1345 **** ! chrI AUGUSTUS intron 269357 270205 0.97 - . Parent=g38.t1 --- 1345 ---- ! chrI AUGUSTUS intron 269357 270205 0.99 - . Parent=g38.t1 *************** *** 1347 **** ! chrI AUGUSTUS intron 270665 271637 0.97 - . Parent=g38.t1 --- 1347 ---- ! chrI AUGUSTUS intron 270665 271637 0.99 - . Parent=g38.t1 *************** *** 1350 **** ! chrI AUGUSTUS intron 272634 272687 0.49 - . Parent=g38.t1 --- 1350 ---- ! chrI AUGUSTUS intron 272634 272687 0.53 - . Parent=g38.t1 *************** *** 1352,1353 **** ! chrI AUGUSTUS CDS 257053 257408 0.59 - 2 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 258592 258833 0.73 - 1 ID=g38.t1.cds;Parent=g38.t1 --- 1352,1353 ---- ! chrI AUGUSTUS CDS 257053 257408 0.65 - 2 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 258592 258833 0.77 - 1 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1356,1357 **** ! chrI AUGUSTUS CDS 259257 259520 0.96 - 0 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 260371 260630 0.99 - 2 ID=g38.t1.cds;Parent=g38.t1 --- 1356,1357 ---- ! chrI AUGUSTUS CDS 259257 259520 0.91 - 0 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 260371 260630 1 - 2 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1360 **** ! chrI AUGUSTUS CDS 261662 261785 1 - 1 ID=g38.t1.cds;Parent=g38.t1 --- 1360 ---- ! chrI AUGUSTUS CDS 261662 261785 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1363,1364 **** ! chrI AUGUSTUS CDS 264237 264452 0.99 - 2 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 264524 264663 0.98 - 1 ID=g38.t1.cds;Parent=g38.t1 --- 1363,1364 ---- ! chrI AUGUSTUS CDS 264237 264452 1 - 2 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 264524 264663 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1366 **** ! chrI AUGUSTUS CDS 265488 265570 0.98 - 0 ID=g38.t1.cds;Parent=g38.t1 --- 1366 ---- ! chrI AUGUSTUS CDS 265488 265570 0.95 - 0 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1374,1375 **** ! chrI AUGUSTUS CDS 268805 268931 0.99 - 0 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 268977 269192 0.99 - 0 ID=g38.t1.cds;Parent=g38.t1 --- 1374,1375 ---- ! chrI AUGUSTUS CDS 268805 268931 1 - 0 ID=g38.t1.cds;Parent=g38.t1 ! chrI AUGUSTUS CDS 268977 269192 1 - 0 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1377 **** ! chrI AUGUSTUS CDS 270206 270392 0.97 - 1 ID=g38.t1.cds;Parent=g38.t1 --- 1377 ---- ! chrI AUGUSTUS CDS 270206 270392 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1379 **** ! chrI AUGUSTUS CDS 271638 272118 0.97 - 1 ID=g38.t1.cds;Parent=g38.t1 --- 1379 ---- ! chrI AUGUSTUS CDS 271638 272118 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1382 **** ! chrI AUGUSTUS CDS 272688 272867 0.49 - 0 ID=g38.t1.cds;Parent=g38.t1 --- 1382 ---- ! chrI AUGUSTUS CDS 272688 272867 0.5 - 0 ID=g38.t1.cds;Parent=g38.t1 *************** *** 1384 **** ! chrI AUGUSTUS five_prime_utr 272868 272896 0.44 - . Parent=g38.t1 --- 1384 ---- ! chrI AUGUSTUS five_prime_utr 272868 272896 0.51 - . Parent=g38.t1 *************** *** 1419,1420 **** ! chrI AUGUSTUS gene 278477 280841 0.12 + . ID=g39 ! chrI AUGUSTUS transcript 278477 280841 0.12 + . ID=g39.t1;Parent=g39 --- 1419,1420 ---- ! chrI AUGUSTUS gene 278477 280841 0.14 + . ID=g39 ! chrI AUGUSTUS transcript 278477 280841 0.14 + . ID=g39.t1;Parent=g39 *************** *** 1422,1423 **** ! chrI AUGUSTUS five_prime_utr 278477 278489 0.27 + . Parent=g39.t1 ! chrI AUGUSTUS five_prime_utr 279788 279847 0.84 + . Parent=g39.t1 --- 1422,1423 ---- ! chrI AUGUSTUS five_prime_utr 278477 278489 0.36 + . Parent=g39.t1 ! chrI AUGUSTUS five_prime_utr 279788 279847 0.76 + . Parent=g39.t1 *************** *** 1425,1427 **** ! chrI AUGUSTUS intron 279917 280387 1 + . Parent=g39.t1 ! chrI AUGUSTUS CDS 279848 279916 0.85 + 0 ID=g39.t1.cds;Parent=g39.t1 ! chrI AUGUSTUS CDS 280388 280801 0.97 + 0 ID=g39.t1.cds;Parent=g39.t1 --- 1425,1427 ---- ! chrI AUGUSTUS intron 279917 280387 0.99 + . Parent=g39.t1 ! chrI AUGUSTUS CDS 279848 279916 0.75 + 0 ID=g39.t1.cds;Parent=g39.t1 ! chrI AUGUSTUS CDS 280388 280801 0.99 + 0 ID=g39.t1.cds;Parent=g39.t1 *************** *** 1429 **** ! chrI AUGUSTUS three_prime_utr 280802 280841 0.47 + . Parent=g39.t1 --- 1429 ---- ! chrI AUGUSTUS three_prime_utr 280802 280841 0.53 + . Parent=g39.t1 *************** *** 1445,1446 **** ! chrI AUGUSTUS gene 281540 291476 0.12 - . ID=g40 ! chrI AUGUSTUS transcript 281540 291476 0.12 - . ID=g40.t1;Parent=g40 --- 1445,1446 ---- ! chrI AUGUSTUS gene 281540 291476 0.16 - . ID=g40 ! chrI AUGUSTUS transcript 281540 291476 0.16 - . ID=g40.t1;Parent=g40 *************** *** 1448 **** ! chrI AUGUSTUS three_prime_utr 281540 281620 0.64 - . Parent=g40.t1 --- 1448 ---- ! chrI AUGUSTUS three_prime_utr 281540 281620 0.6 - . Parent=g40.t1 *************** *** 1452 **** ! chrI AUGUSTUS intron 284982 286070 0.96 - . Parent=g40.t1 --- 1452 ---- ! chrI AUGUSTUS intron 284982 286070 0.97 - . Parent=g40.t1 *************** *** 1456,1457 **** ! chrI AUGUSTUS intron 289589 289643 0.99 - . Parent=g40.t1 ! chrI AUGUSTUS intron 289755 291278 0.26 - . Parent=g40.t1 --- 1456,1457 ---- ! chrI AUGUSTUS intron 289589 289643 1 - . Parent=g40.t1 ! chrI AUGUSTUS intron 289755 291278 0.28 - . Parent=g40.t1 *************** *** 1461 **** ! chrI AUGUSTUS CDS 286071 286181 0.96 - 0 ID=g40.t1.cds;Parent=g40.t1 --- 1461 ---- ! chrI AUGUSTUS CDS 286071 286181 0.97 - 0 ID=g40.t1.cds;Parent=g40.t1 *************** *** 1465,1466 **** ! chrI AUGUSTUS CDS 289644 289754 0.26 - 0 ID=g40.t1.cds;Parent=g40.t1 ! chrI AUGUSTUS CDS 291279 291401 0.27 - 0 ID=g40.t1.cds;Parent=g40.t1 --- 1465,1466 ---- ! chrI AUGUSTUS CDS 289644 289754 0.29 - 0 ID=g40.t1.cds;Parent=g40.t1 ! chrI AUGUSTUS CDS 291279 291401 0.28 - 0 ID=g40.t1.cds;Parent=g40.t1 *************** *** 1468 **** ! chrI AUGUSTUS five_prime_utr 291402 291476 0.25 - . Parent=g40.t1 --- 1468 ---- ! chrI AUGUSTUS five_prime_utr 291402 291476 0.29 - . Parent=g40.t1 *************** *** 1487,1488 **** ! chrI AUGUSTUS gene 293167 297325 0.31 + . ID=g41 ! chrI AUGUSTUS transcript 293167 297325 0.31 + . ID=g41.t1;Parent=g41 --- 1487,1488 ---- ! chrI AUGUSTUS gene 293167 297325 0.38 + . ID=g41 ! chrI AUGUSTUS transcript 293167 297325 0.38 + . ID=g41.t1;Parent=g41 *************** *** 1490 **** ! chrI AUGUSTUS five_prime_utr 293167 293217 0.43 + . Parent=g41.t1 --- 1490 ---- ! chrI AUGUSTUS five_prime_utr 293167 293217 0.48 + . Parent=g41.t1 *************** *** 1492,1493 **** ! chrI AUGUSTUS intron 295213 296230 1 + . Parent=g41.t1 ! chrI AUGUSTUS CDS 293218 295212 1 + 0 ID=g41.t1.cds;Parent=g41.t1 --- 1492,1493 ---- ! chrI AUGUSTUS intron 295213 296230 0.99 + . Parent=g41.t1 ! chrI AUGUSTUS CDS 293218 295212 0.99 + 0 ID=g41.t1.cds;Parent=g41.t1 *************** *** 1496,1497 **** ! chrI AUGUSTUS three_prime_utr 296603 296656 0.82 + . Parent=g41.t1 ! chrI AUGUSTUS three_prime_utr 297066 297325 0.81 + . Parent=g41.t1 --- 1496,1497 ---- ! chrI AUGUSTUS three_prime_utr 296603 296656 0.85 + . Parent=g41.t1 ! chrI AUGUSTUS three_prime_utr 297066 297325 0.88 + . Parent=g41.t1 *************** *** 1521,1522 **** ! chrI AUGUSTUS gene 300047 302761 0.11 + . ID=g42 ! chrI AUGUSTUS transcript 300047 302761 0.11 + . ID=g42.t1;Parent=g42 --- 1521,1522 ---- ! chrI AUGUSTUS gene 300047 302761 0.16 + . ID=g42 ! chrI AUGUSTUS transcript 300047 302761 0.16 + . ID=g42.t1;Parent=g42 *************** *** 1524 **** ! chrI AUGUSTUS five_prime_utr 300047 300113 0.21 + . Parent=g42.t1 --- 1524 ---- ! chrI AUGUSTUS five_prime_utr 300047 300113 0.29 + . Parent=g42.t1 *************** *** 1530 **** ! chrI AUGUSTUS CDS 300721 302634 0.99 + 0 ID=g42.t1.cds;Parent=g42.t1 --- 1530 ---- ! chrI AUGUSTUS CDS 300721 302634 1 + 0 ID=g42.t1.cds;Parent=g42.t1 *************** *** 1532 **** ! chrI AUGUSTUS three_prime_utr 302635 302761 0.47 + . Parent=g42.t1 --- 1532 ---- ! chrI AUGUSTUS three_prime_utr 302635 302761 0.55 + . Parent=g42.t1 *************** *** 1554,1555 **** ! chrI AUGUSTUS gene 302765 306816 0.16 - . ID=g43 ! chrI AUGUSTUS transcript 302765 306816 0.16 - . ID=g43.t1;Parent=g43 --- 1554,1555 ---- ! chrI AUGUSTUS gene 302765 306816 0.29 - . ID=g43 ! chrI AUGUSTUS transcript 302765 306816 0.29 - . ID=g43.t1;Parent=g43 *************** *** 1557 **** ! chrI AUGUSTUS three_prime_utr 302765 302798 0.79 - . Parent=g43.t1 --- 1557 ---- ! chrI AUGUSTUS three_prime_utr 302765 302798 0.89 - . Parent=g43.t1 *************** *** 1563 **** ! chrI AUGUSTUS intron 304846 304899 0.98 - . Parent=g43.t1 --- 1563 ---- ! chrI AUGUSTUS intron 304846 304899 0.99 - . Parent=g43.t1 *************** *** 1570,1572 **** ! chrI AUGUSTUS CDS 304249 304394 0.63 - 1 ID=g43.t1.cds;Parent=g43.t1 ! chrI AUGUSTUS CDS 304763 304845 0.38 - 0 ID=g43.t1.cds;Parent=g43.t1 ! chrI AUGUSTUS CDS 304900 305580 1 - 0 ID=g43.t1.cds;Parent=g43.t1 --- 1570,1572 ---- ! chrI AUGUSTUS CDS 304249 304394 0.69 - 1 ID=g43.t1.cds;Parent=g43.t1 ! chrI AUGUSTUS CDS 304763 304845 0.39 - 0 ID=g43.t1.cds;Parent=g43.t1 ! chrI AUGUSTUS CDS 304900 305580 0.99 - 0 ID=g43.t1.cds;Parent=g43.t1 *************** *** 1577 **** ! chrI AUGUSTUS five_prime_utr 306788 306816 0.77 - . Parent=g43.t1 --- 1577 ---- ! chrI AUGUSTUS five_prime_utr 306788 306816 0.79 - . Parent=g43.t1 *************** *** 1603,1604 **** ! chrI AUGUSTUS gene 307337 308860 0.19 + . ID=g44 ! chrI AUGUSTUS transcript 307337 308860 0.19 + . ID=g44.t1;Parent=g44 --- 1603,1604 ---- ! chrI AUGUSTUS gene 307337 308860 0.16 + . ID=g44 ! chrI AUGUSTUS transcript 307337 308860 0.16 + . ID=g44.t1;Parent=g44 *************** *** 1606 **** ! chrI AUGUSTUS five_prime_utr 307337 307410 0.4 + . Parent=g44.t1 --- 1606 ---- ! chrI AUGUSTUS five_prime_utr 307337 307410 0.38 + . Parent=g44.t1 *************** *** 1612,1613 **** ! chrI AUGUSTUS CDS 307537 307891 0.98 + 1 ID=g44.t1.cds;Parent=g44.t1 ! chrI AUGUSTUS CDS 307963 308542 1 + 0 ID=g44.t1.cds;Parent=g44.t1 --- 1612,1613 ---- ! chrI AUGUSTUS CDS 307537 307891 0.97 + 1 ID=g44.t1.cds;Parent=g44.t1 ! chrI AUGUSTUS CDS 307963 308542 0.99 + 0 ID=g44.t1.cds;Parent=g44.t1 *************** *** 1616 **** ! chrI AUGUSTUS three_prime_utr 308784 308860 0.49 + . Parent=g44.t1 --- 1616 ---- ! chrI AUGUSTUS three_prime_utr 308784 308860 0.46 + . Parent=g44.t1 *************** *** 1635,1636 **** ! chrI AUGUSTUS gene 308947 312101 0.08 + . ID=g45 ! chrI AUGUSTUS transcript 308947 312101 0.08 + . ID=g45.t1;Parent=g45 --- 1635,1636 ---- ! chrI AUGUSTUS gene 308947 312101 0.05 + . ID=g45 ! chrI AUGUSTUS transcript 308947 312101 0.05 + . ID=g45.t1;Parent=g45 *************** *** 1638 **** ! chrI AUGUSTUS five_prime_utr 308947 308977 0.28 + . Parent=g45.t1 --- 1638 ---- ! chrI AUGUSTUS five_prime_utr 308947 308977 0.32 + . Parent=g45.t1 *************** *** 1645,1646 **** ! chrI AUGUSTUS CDS 308978 309210 0.92 + 0 ID=g45.t1.cds;Parent=g45.t1 ! chrI AUGUSTUS CDS 309518 309677 0.91 + 1 ID=g45.t1.cds;Parent=g45.t1 --- 1645,1646 ---- ! chrI AUGUSTUS CDS 308978 309210 0.91 + 0 ID=g45.t1.cds;Parent=g45.t1 ! chrI AUGUSTUS CDS 309518 309677 0.92 + 1 ID=g45.t1.cds;Parent=g45.t1 *************** *** 1650 **** ! chrI AUGUSTUS CDS 311843 312046 0.99 + 0 ID=g45.t1.cds;Parent=g45.t1 --- 1650 ---- ! chrI AUGUSTUS CDS 311843 312046 0.96 + 0 ID=g45.t1.cds;Parent=g45.t1 *************** *** 1652 **** ! chrI AUGUSTUS three_prime_utr 312047 312101 0.34 + . Parent=g45.t1 --- 1652 ---- ! chrI AUGUSTUS three_prime_utr 312047 312101 0.19 + . Parent=g45.t1 *************** *** 1671,1672 **** ! chrI AUGUSTUS gene 312457 312986 0.26 + . ID=g46 ! chrI AUGUSTUS transcript 312457 312986 0.26 + . ID=g46.t1;Parent=g46 --- 1671,1672 ---- ! chrI AUGUSTUS gene 312457 312986 0.29 + . ID=g46 ! chrI AUGUSTUS transcript 312457 312986 0.29 + . ID=g46.t1;Parent=g46 *************** *** 1676,1677 **** ! chrI AUGUSTUS intron 312700 312750 0.99 + . Parent=g46.t1 ! chrI AUGUSTUS CDS 312511 312699 0.98 + 0 ID=g46.t1.cds;Parent=g46.t1 --- 1676,1677 ---- ! chrI AUGUSTUS intron 312700 312750 1 + . Parent=g46.t1 ! chrI AUGUSTUS CDS 312511 312699 0.96 + 0 ID=g46.t1.cds;Parent=g46.t1 *************** *** 1680 **** ! chrI AUGUSTUS three_prime_utr 312898 312986 0.77 + . Parent=g46.t1 --- 1680 ---- ! chrI AUGUSTUS three_prime_utr 312898 312986 0.84 + . Parent=g46.t1 *************** *** 1695,1696 **** ! chrI AUGUSTUS gene 313207 315994 0.09 + . ID=g47 ! chrI AUGUSTUS transcript 313207 315994 0.09 + . ID=g47.t1;Parent=g47 --- 1695,1696 ---- ! chrI AUGUSTUS gene 313207 315994 0.15 + . ID=g47 ! chrI AUGUSTUS transcript 313207 315994 0.15 + . ID=g47.t1;Parent=g47 *************** *** 1698 **** ! chrI AUGUSTUS five_prime_utr 313207 313311 0.17 + . Parent=g47.t1 --- 1698 ---- ! chrI AUGUSTUS five_prime_utr 313207 313311 0.27 + . Parent=g47.t1 *************** *** 1700 **** ! chrI AUGUSTUS intron 313322 313375 0.97 + . Parent=g47.t1 --- 1700 ---- ! chrI AUGUSTUS intron 313322 313375 1 + . Parent=g47.t1 *************** *** 1703 **** ! chrI AUGUSTUS intron 314163 314996 0.97 + . Parent=g47.t1 --- 1703 ---- ! chrI AUGUSTUS intron 314163 314996 0.98 + . Parent=g47.t1 *************** *** 1705,1706 **** ! chrI AUGUSTUS CDS 313312 313321 0.99 + 0 ID=g47.t1.cds;Parent=g47.t1 ! chrI AUGUSTUS CDS 313376 313464 0.97 + 2 ID=g47.t1.cds;Parent=g47.t1 --- 1705,1706 ---- ! chrI AUGUSTUS CDS 313312 313321 1 + 0 ID=g47.t1.cds;Parent=g47.t1 ! chrI AUGUSTUS CDS 313376 313464 1 + 2 ID=g47.t1.cds;Parent=g47.t1 *************** *** 1712 **** ! chrI AUGUSTUS three_prime_utr 315762 315994 0.6 + . Parent=g47.t1 --- 1712 ---- ! chrI AUGUSTUS three_prime_utr 315762 315994 0.53 + . Parent=g47.t1 *************** *** 1731,1732 **** ! chrI AUGUSTUS gene 316277 318304 0.74 + . ID=g48 ! chrI AUGUSTUS transcript 316277 318304 0.74 + . ID=g48.t1;Parent=g48 --- 1731,1732 ---- ! chrI AUGUSTUS gene 316277 318304 0.87 + . ID=g48 ! chrI AUGUSTUS transcript 316277 318304 0.87 + . ID=g48.t1;Parent=g48 *************** *** 1734 **** ! chrI AUGUSTUS five_prime_utr 316277 316309 0.81 + . Parent=g48.t1 --- 1734 ---- ! chrI AUGUSTUS five_prime_utr 316277 316309 0.91 + . Parent=g48.t1 *************** *** 1746 **** ! chrI AUGUSTUS three_prime_utr 317943 318304 0.9 + . Parent=g48.t1 --- 1746 ---- ! chrI AUGUSTUS three_prime_utr 317943 318304 0.95 + . Parent=g48.t1 *************** *** 1766,1767 **** ! chrI AUGUSTUS gene 318326 321846 0.68 - . ID=g49 ! chrI AUGUSTUS transcript 318326 321846 0.68 - . ID=g49.t1;Parent=g49 --- 1766,1767 ---- ! chrI AUGUSTUS gene 318326 321846 0.56 - . ID=g49 ! chrI AUGUSTUS transcript 318326 321846 0.56 - . ID=g49.t1;Parent=g49 *************** *** 1769 **** ! chrI AUGUSTUS three_prime_utr 318326 318427 0.93 - . Parent=g49.t1 --- 1769 ---- ! chrI AUGUSTUS three_prime_utr 318326 318427 0.88 - . Parent=g49.t1 *************** *** 1775 **** ! chrI AUGUSTUS intron 321555 321624 0.99 - . Parent=g49.t1 --- 1775 ---- ! chrI AUGUSTUS intron 321555 321624 0.98 - . Parent=g49.t1 *************** *** 1782 **** ! chrI AUGUSTUS CDS 321625 321681 0.99 - 2 ID=g49.t1.cds;Parent=g49.t1 --- 1782 ---- ! chrI AUGUSTUS CDS 321625 321681 0.98 - 2 ID=g49.t1.cds;Parent=g49.t1 *************** *** 1785 **** ! chrI AUGUSTUS five_prime_utr 321812 321846 0.74 - . Parent=g49.t1 --- 1785 ---- ! chrI AUGUSTUS five_prime_utr 321812 321846 0.67 - . Parent=g49.t1 *************** *** 1808,1809 **** ! chrI AUGUSTUS gene 322019 322596 0.1 - . ID=g50 ! chrI AUGUSTUS transcript 322019 322596 0.1 - . ID=g50.t1;Parent=g50 --- 1808,1809 ---- ! chrI AUGUSTUS gene 322019 322596 0.06 - . ID=g50 ! chrI AUGUSTUS transcript 322019 322596 0.06 - . ID=g50.t1;Parent=g50 *************** *** 1811 **** ! chrI AUGUSTUS three_prime_utr 322019 322076 0.39 - . Parent=g50.t1 --- 1811 ---- ! chrI AUGUSTUS three_prime_utr 322019 322076 0.32 - . Parent=g50.t1 *************** *** 1817 **** ! chrI AUGUSTUS CDS 322449 322552 0.64 - 0 ID=g50.t1.cds;Parent=g50.t1 --- 1817 ---- ! chrI AUGUSTUS CDS 322449 322552 0.61 - 0 ID=g50.t1.cds;Parent=g50.t1 *************** *** 1819 **** ! chrI AUGUSTUS five_prime_utr 322553 322596 0.32 - . Parent=g50.t1 --- 1819 ---- ! chrI AUGUSTUS five_prime_utr 322553 322596 0.22 - . Parent=g50.t1 *************** *** 1835,1836 **** ! chrI AUGUSTUS gene 324048 327306 0.48 - . ID=g51 ! chrI AUGUSTUS transcript 324048 327306 0.48 - . ID=g51.t1;Parent=g51 --- 1835,1836 ---- ! chrI AUGUSTUS gene 324048 327306 0.4 - . ID=g51 ! chrI AUGUSTUS transcript 324048 327306 0.4 - . ID=g51.t1;Parent=g51 *************** *** 1838 **** ! chrI AUGUSTUS three_prime_utr 324048 324082 0.98 - . Parent=g51.t1 --- 1838 ---- ! chrI AUGUSTUS three_prime_utr 324048 324082 0.96 - . Parent=g51.t1 *************** *** 1841 **** ! chrI AUGUSTUS intron 324464 325335 0.8 - . Parent=g51.t1 --- 1841 ---- ! chrI AUGUSTUS intron 324464 325335 0.87 - . Parent=g51.t1 *************** *** 1844 **** ! chrI AUGUSTUS intron 326587 326851 0.98 - . Parent=g51.t1 --- 1844 ---- ! chrI AUGUSTUS intron 326587 326851 0.99 - . Parent=g51.t1 *************** *** 1846 **** ! chrI AUGUSTUS CDS 324083 324269 0.98 - 1 ID=g51.t1.cds;Parent=g51.t1 --- 1846 ---- ! chrI AUGUSTUS CDS 324083 324269 0.96 - 1 ID=g51.t1.cds;Parent=g51.t1 *************** *** 1848 **** ! chrI AUGUSTUS CDS 325336 325804 0.87 - 1 ID=g51.t1.cds;Parent=g51.t1 --- 1848 ---- ! chrI AUGUSTUS CDS 325336 325804 0.91 - 1 ID=g51.t1.cds;Parent=g51.t1 *************** *** 1850 **** ! chrI AUGUSTUS CDS 326227 326586 0.99 - 0 ID=g51.t1.cds;Parent=g51.t1 --- 1850 ---- ! chrI AUGUSTUS CDS 326227 326586 1 - 0 ID=g51.t1.cds;Parent=g51.t1 *************** *** 1854 **** ! chrI AUGUSTUS five_prime_utr 327254 327306 0.62 - . Parent=g51.t1 --- 1854 ---- ! chrI AUGUSTUS five_prime_utr 327254 327306 0.48 - . Parent=g51.t1 *************** *** 1876,1877 **** ! chrI AUGUSTUS gene 327717 330220 0.27 + . ID=g52 ! chrI AUGUSTUS transcript 327717 330220 0.27 + . ID=g52.t1;Parent=g52 --- 1876,1877 ---- ! chrI AUGUSTUS gene 327717 330220 0.28 + . ID=g52 ! chrI AUGUSTUS transcript 327717 330220 0.28 + . ID=g52.t1;Parent=g52 *************** *** 1879 **** ! chrI AUGUSTUS five_prime_utr 327717 327890 0.35 + . Parent=g52.t1 --- 1879 ---- ! chrI AUGUSTUS five_prime_utr 327717 327890 0.36 + . Parent=g52.t1 *************** *** 1881,1885 **** ! chrI AUGUSTUS intron 327922 328934 0.89 + . Parent=g52.t1 ! chrI AUGUSTUS intron 329054 329921 0.7 + . Parent=g52.t1 ! chrI AUGUSTUS CDS 327891 327921 0.47 + 0 ID=g52.t1.cds;Parent=g52.t1 ! chrI AUGUSTUS CDS 328935 329053 0.7 + 2 ID=g52.t1.cds;Parent=g52.t1 ! chrI AUGUSTUS CDS 329922 330155 0.9 + 0 ID=g52.t1.cds;Parent=g52.t1 --- 1881,1885 ---- ! chrI AUGUSTUS intron 327922 328934 0.82 + . Parent=g52.t1 ! chrI AUGUSTUS intron 329054 329921 0.67 + . Parent=g52.t1 ! chrI AUGUSTUS CDS 327891 327921 0.39 + 0 ID=g52.t1.cds;Parent=g52.t1 ! chrI AUGUSTUS CDS 328935 329053 0.67 + 2 ID=g52.t1.cds;Parent=g52.t1 ! chrI AUGUSTUS CDS 329922 330155 0.93 + 0 ID=g52.t1.cds;Parent=g52.t1 *************** *** 1887 **** ! chrI AUGUSTUS three_prime_utr 330156 330220 0.93 + . Parent=g52.t1 --- 1887 ---- ! chrI AUGUSTUS three_prime_utr 330156 330220 0.91 + . Parent=g52.t1 *************** *** 1903,1904 **** ! chrI AUGUSTUS gene 330895 332646 0.27 - . ID=g53 ! chrI AUGUSTUS transcript 330895 332646 0.27 - . ID=g53.t1;Parent=g53 --- 1903,1904 ---- ! chrI AUGUSTUS gene 330895 332646 0.3 - . ID=g53 ! chrI AUGUSTUS transcript 330895 332646 0.3 - . ID=g53.t1;Parent=g53 *************** *** 1906 **** ! chrI AUGUSTUS three_prime_utr 330895 330962 0.69 - . Parent=g53.t1 --- 1906 ---- ! chrI AUGUSTUS three_prime_utr 330895 330962 0.73 - . Parent=g53.t1 *************** *** 1908 **** ! chrI AUGUSTUS intron 331290 331338 0.97 - . Parent=g53.t1 --- 1908 ---- ! chrI AUGUSTUS intron 331290 331338 0.98 - . Parent=g53.t1 *************** *** 1910,1912 **** ! chrI AUGUSTUS intron 331698 332558 1 - . Parent=g53.t1 ! chrI AUGUSTUS CDS 330963 331289 0.97 - 0 ID=g53.t1.cds;Parent=g53.t1 ! chrI AUGUSTUS CDS 331339 331464 1 - 0 ID=g53.t1.cds;Parent=g53.t1 --- 1910,1912 ---- ! chrI AUGUSTUS intron 331698 332558 0.99 - . Parent=g53.t1 ! chrI AUGUSTUS CDS 330963 331289 0.99 - 0 ID=g53.t1.cds;Parent=g53.t1 ! chrI AUGUSTUS CDS 331339 331464 0.99 - 0 ID=g53.t1.cds;Parent=g53.t1 *************** *** 1914 **** ! chrI AUGUSTUS CDS 332559 332601 0.99 - 0 ID=g53.t1.cds;Parent=g53.t1 --- 1914 ---- ! chrI AUGUSTUS CDS 332559 332601 0.98 - 0 ID=g53.t1.cds;Parent=g53.t1 *************** *** 1916 **** ! chrI AUGUSTUS five_prime_utr 332602 332646 0.39 - . Parent=g53.t1 --- 1916 ---- ! chrI AUGUSTUS five_prime_utr 332602 332646 0.43 - . Parent=g53.t1 *************** *** 1933,1934 **** ! chrI AUGUSTUS gene 333227 338675 0.11 + . ID=g54 ! chrI AUGUSTUS transcript 333227 338675 0.11 + . ID=g54.t1;Parent=g54 --- 1933,1934 ---- ! chrI AUGUSTUS gene 333227 338675 0.12 + . ID=g54 ! chrI AUGUSTUS transcript 333227 338675 0.12 + . ID=g54.t1;Parent=g54 *************** *** 1938,1939 **** ! chrI AUGUSTUS intron 333487 333766 0.93 + . Parent=g54.t1 ! chrI AUGUSTUS intron 333848 333898 0.89 + . Parent=g54.t1 --- 1938,1939 ---- ! chrI AUGUSTUS intron 333487 333766 0.97 + . Parent=g54.t1 ! chrI AUGUSTUS intron 333848 333898 0.86 + . Parent=g54.t1 *************** *** 1941 **** ! chrI AUGUSTUS intron 334294 334640 0.9 + . Parent=g54.t1 --- 1941 ---- ! chrI AUGUSTUS intron 334294 334640 0.86 + . Parent=g54.t1 *************** *** 1943 **** ! chrI AUGUSTUS intron 335767 337183 1 + . Parent=g54.t1 --- 1943 ---- ! chrI AUGUSTUS intron 335767 337183 0.98 + . Parent=g54.t1 *************** *** 1945,1948 **** ! chrI AUGUSTUS CDS 333442 333486 0.72 + 0 ID=g54.t1.cds;Parent=g54.t1 ! chrI AUGUSTUS CDS 333767 333847 0.89 + 0 ID=g54.t1.cds;Parent=g54.t1 ! chrI AUGUSTUS CDS 333899 333994 0.87 + 0 ID=g54.t1.cds;Parent=g54.t1 ! chrI AUGUSTUS CDS 334161 334293 0.9 + 0 ID=g54.t1.cds;Parent=g54.t1 --- 1945,1948 ---- ! chrI AUGUSTUS CDS 333442 333486 0.76 + 0 ID=g54.t1.cds;Parent=g54.t1 ! chrI AUGUSTUS CDS 333767 333847 0.86 + 0 ID=g54.t1.cds;Parent=g54.t1 ! chrI AUGUSTUS CDS 333899 333994 0.86 + 0 ID=g54.t1.cds;Parent=g54.t1 ! chrI AUGUSTUS CDS 334161 334293 0.86 + 0 ID=g54.t1.cds;Parent=g54.t1 *************** *** 1950 **** ! chrI AUGUSTUS CDS 335420 335766 1 + 0 ID=g54.t1.cds;Parent=g54.t1 --- 1950 ---- ! chrI AUGUSTUS CDS 335420 335766 0.98 + 0 ID=g54.t1.cds;Parent=g54.t1 *************** *** 1952 **** ! chrI AUGUSTUS CDS 338365 338617 0.72 + 1 ID=g54.t1.cds;Parent=g54.t1 --- 1952 ---- ! chrI AUGUSTUS CDS 338365 338617 0.73 + 1 ID=g54.t1.cds;Parent=g54.t1 *************** *** 1954 **** ! chrI AUGUSTUS three_prime_utr 338618 338675 0.6 + . Parent=g54.t1 --- 1954 ---- ! chrI AUGUSTUS three_prime_utr 338618 338675 0.69 + . Parent=g54.t1 *************** *** 1974,1975 **** ! chrI AUGUSTUS gene 342357 350529 0.07 + . ID=g55 ! chrI AUGUSTUS transcript 342357 350529 0.07 + . ID=g55.t1;Parent=g55 --- 1974,1975 ---- ! chrI AUGUSTUS gene 342357 350529 0.09 + . ID=g55 ! chrI AUGUSTUS transcript 342357 350529 0.09 + . ID=g55.t1;Parent=g55 *************** *** 1977 **** ! chrI AUGUSTUS five_prime_utr 342357 342383 0.93 + . Parent=g55.t1 --- 1977 ---- ! chrI AUGUSTUS five_prime_utr 342357 342383 0.92 + . Parent=g55.t1 *************** *** 1979,1986 **** ! chrI AUGUSTUS intron 342409 342520 0.95 + . Parent=g55.t1 ! chrI AUGUSTUS intron 342707 345098 0.67 + . Parent=g55.t1 ! chrI AUGUSTUS intron 345225 345268 0.82 + . Parent=g55.t1 ! chrI AUGUSTUS intron 345386 346368 0.8 + . Parent=g55.t1 ! chrI AUGUSTUS intron 346471 346764 0.46 + . Parent=g55.t1 ! chrI AUGUSTUS intron 346893 347478 0.88 + . Parent=g55.t1 ! chrI AUGUSTUS intron 347745 347791 1 + . Parent=g55.t1 ! chrI AUGUSTUS intron 347947 347992 1 + . Parent=g55.t1 --- 1979,1986 ---- ! chrI AUGUSTUS intron 342409 342520 0.99 + . Parent=g55.t1 ! chrI AUGUSTUS intron 342707 345098 0.65 + . Parent=g55.t1 ! chrI AUGUSTUS intron 345225 345268 0.72 + . Parent=g55.t1 ! chrI AUGUSTUS intron 345386 346368 0.72 + . Parent=g55.t1 ! chrI AUGUSTUS intron 346471 346764 0.53 + . Parent=g55.t1 ! chrI AUGUSTUS intron 346893 347478 0.92 + . Parent=g55.t1 ! chrI AUGUSTUS intron 347745 347791 0.98 + . Parent=g55.t1 ! chrI AUGUSTUS intron 347947 347992 0.98 + . Parent=g55.t1 *************** *** 1988,1994 **** ! chrI AUGUSTUS intron 349653 350066 0.99 + . Parent=g55.t1 ! chrI AUGUSTUS CDS 342384 342408 0.99 + 0 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 342521 342706 0.94 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 345099 345224 0.83 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 345269 345385 0.8 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 346369 346470 0.93 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 346765 346892 0.84 + 2 ID=g55.t1.cds;Parent=g55.t1 --- 1988,1994 ---- ! chrI AUGUSTUS intron 349653 350066 0.98 + . Parent=g55.t1 ! chrI AUGUSTUS CDS 342384 342408 1 + 0 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 342521 342706 0.99 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 345099 345224 0.71 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 345269 345385 0.72 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 346369 346470 0.87 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 346765 346892 0.91 + 2 ID=g55.t1.cds;Parent=g55.t1 *************** *** 1996,1999 **** ! chrI AUGUSTUS CDS 347792 347946 1 + 1 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 347993 348305 0.85 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 349050 349652 0.9 + 1 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 350067 350469 0.99 + 1 ID=g55.t1.cds;Parent=g55.t1 --- 1996,1999 ---- ! chrI AUGUSTUS CDS 347792 347946 0.98 + 1 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 347993 348305 0.83 + 2 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 349050 349652 0.95 + 1 ID=g55.t1.cds;Parent=g55.t1 ! chrI AUGUSTUS CDS 350067 350469 1 + 1 ID=g55.t1.cds;Parent=g55.t1 *************** *** 2001 **** ! chrI AUGUSTUS three_prime_utr 350470 350529 0.55 + . Parent=g55.t1 --- 2001 ---- ! chrI AUGUSTUS three_prime_utr 350470 350529 0.61 + . Parent=g55.t1 *************** *** 2024,2025 **** ! chrI AUGUSTUS gene 357621 372979 0.06 + . ID=g56 ! chrI AUGUSTUS transcript 357621 372979 0.06 + . ID=g56.t1;Parent=g56 --- 2024,2025 ---- ! chrI AUGUSTUS gene 357621 372979 0.09 + . ID=g56 ! chrI AUGUSTUS transcript 357621 372979 0.09 + . ID=g56.t1;Parent=g56 *************** *** 2027 **** ! chrI AUGUSTUS five_prime_utr 357621 357735 0.53 + . Parent=g56.t1 --- 2027 ---- ! chrI AUGUSTUS five_prime_utr 357621 357735 0.56 + . Parent=g56.t1 *************** *** 2029,2030 **** ! chrI AUGUSTUS intron 357893 358418 0.27 + . Parent=g56.t1 ! chrI AUGUSTUS intron 358682 358893 0.89 + . Parent=g56.t1 --- 2029,2030 ---- ! chrI AUGUSTUS intron 357893 358418 0.3 + . Parent=g56.t1 ! chrI AUGUSTUS intron 358682 358893 0.91 + . Parent=g56.t1 *************** *** 2033 **** ! chrI AUGUSTUS intron 360340 361566 0.96 + . Parent=g56.t1 --- 2033 ---- ! chrI AUGUSTUS intron 360340 361566 0.97 + . Parent=g56.t1 *************** *** 2035 **** ! chrI AUGUSTUS intron 362991 363509 0.83 + . Parent=g56.t1 --- 2035 ---- ! chrI AUGUSTUS intron 362991 363509 0.79 + . Parent=g56.t1 *************** *** 2037,2044 **** ! chrI AUGUSTUS intron 364404 364454 0.99 + . Parent=g56.t1 ! chrI AUGUSTUS intron 364562 364615 0.7 + . Parent=g56.t1 ! chrI AUGUSTUS intron 364688 365101 0.67 + . Parent=g56.t1 ! chrI AUGUSTUS intron 365216 368920 0.97 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369060 369104 0.97 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369264 369382 0.96 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369474 369521 0.98 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369653 369971 0.98 + . Parent=g56.t1 --- 2037,2044 ---- ! chrI AUGUSTUS intron 364404 364454 1 + . Parent=g56.t1 ! chrI AUGUSTUS intron 364562 364615 0.65 + . Parent=g56.t1 ! chrI AUGUSTUS intron 364688 365101 0.64 + . Parent=g56.t1 ! chrI AUGUSTUS intron 365216 368920 0.98 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369060 369104 1 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369264 369382 0.98 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369474 369521 1 + . Parent=g56.t1 ! chrI AUGUSTUS intron 369653 369971 1 + . Parent=g56.t1 *************** *** 2046,2049 **** ! chrI AUGUSTUS intron 371197 371247 1 + . Parent=g56.t1 ! chrI AUGUSTUS intron 371419 372674 0.98 + . Parent=g56.t1 ! chrI AUGUSTUS CDS 357736 357892 0.28 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 358419 358681 0.89 + 2 ID=g56.t1.cds;Parent=g56.t1 --- 2046,2049 ---- ! chrI AUGUSTUS intron 371197 371247 0.99 + . Parent=g56.t1 ! chrI AUGUSTUS intron 371419 372674 0.99 + . Parent=g56.t1 ! chrI AUGUSTUS CDS 357736 357892 0.3 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 358419 358681 0.91 + 2 ID=g56.t1.cds;Parent=g56.t1 *************** *** 2053 **** ! chrI AUGUSTUS CDS 361567 361790 0.96 + 0 ID=g56.t1.cds;Parent=g56.t1 --- 2053 ---- ! chrI AUGUSTUS CDS 361567 361790 0.97 + 0 ID=g56.t1.cds;Parent=g56.t1 *************** *** 2056,2063 **** ! chrI AUGUSTUS CDS 364257 364403 0.99 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 364455 364561 0.99 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 364616 364687 0.69 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 365102 365215 0.97 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 368921 369059 0.97 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 369105 369263 0.93 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 369383 369473 0.98 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 369522 369652 0.98 + 2 ID=g56.t1.cds;Parent=g56.t1 --- 2056,2063 ---- ! chrI AUGUSTUS CDS 364257 364403 1 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 364455 364561 1 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 364616 364687 0.65 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 365102 365215 0.98 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 368921 369059 1 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 369105 369263 0.98 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 369383 369473 1 + 0 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 369522 369652 1 + 2 ID=g56.t1.cds;Parent=g56.t1 *************** *** 2066,2067 **** ! chrI AUGUSTUS CDS 371248 371418 1 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 372675 372930 0.98 + 1 ID=g56.t1.cds;Parent=g56.t1 --- 2066,2067 ---- ! chrI AUGUSTUS CDS 371248 371418 0.98 + 1 ID=g56.t1.cds;Parent=g56.t1 ! chrI AUGUSTUS CDS 372675 372930 1 + 1 ID=g56.t1.cds;Parent=g56.t1 *************** *** 2069 **** ! chrI AUGUSTUS three_prime_utr 372931 372979 0.49 + . Parent=g56.t1 --- 2069 ---- ! chrI AUGUSTUS three_prime_utr 372931 372979 0.55 + . Parent=g56.t1 *************** *** 2094,2095 **** ! chrI AUGUSTUS gene 375111 401510 0.16 - . ID=g57 ! chrI AUGUSTUS transcript 375111 401510 0.16 - . ID=g57.t1;Parent=g57 --- 2094,2095 ---- ! chrI AUGUSTUS gene 375111 401510 0.11 - . ID=g57 ! chrI AUGUSTUS transcript 375111 401510 0.11 - . ID=g57.t1;Parent=g57 *************** *** 2097,2098 **** ! chrI AUGUSTUS three_prime_utr 375111 375481 0.38 - . Parent=g57.t1 ! chrI AUGUSTUS three_prime_utr 377080 377089 0.52 - . Parent=g57.t1 --- 2097,2098 ---- ! chrI AUGUSTUS three_prime_utr 375111 375481 0.43 - . Parent=g57.t1 ! chrI AUGUSTUS three_prime_utr 377080 377089 0.51 - . Parent=g57.t1 *************** *** 2100,2101 **** ! chrI AUGUSTUS intron 377584 377690 0.87 - . Parent=g57.t1 ! chrI AUGUSTUS intron 377778 379389 0.88 - . Parent=g57.t1 --- 2100,2101 ---- ! chrI AUGUSTUS intron 377584 377690 0.76 - . Parent=g57.t1 ! chrI AUGUSTUS intron 377778 379389 0.79 - . Parent=g57.t1 *************** *** 2103,2104 **** ! chrI AUGUSTUS intron 379707 381013 0.83 - . Parent=g57.t1 ! chrI AUGUSTUS intron 381855 384596 0.91 - . Parent=g57.t1 --- 2103,2104 ---- ! chrI AUGUSTUS intron 379707 381013 0.8 - . Parent=g57.t1 ! chrI AUGUSTUS intron 381855 384596 0.96 - . Parent=g57.t1 *************** *** 2107,2109 **** ! chrI AUGUSTUS intron 389961 390884 0.9 - . Parent=g57.t1 ! chrI AUGUSTUS intron 391162 392472 0.96 - . Parent=g57.t1 ! chrI AUGUSTUS intron 392710 396104 1 - . Parent=g57.t1 --- 2107,2109 ---- ! chrI AUGUSTUS intron 389961 390884 0.92 - . Parent=g57.t1 ! chrI AUGUSTUS intron 391162 392472 0.93 - . Parent=g57.t1 ! chrI AUGUSTUS intron 392710 396104 0.96 - . Parent=g57.t1 *************** *** 2118,2123 **** ! chrI AUGUSTUS CDS 377090 377583 0.98 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 377691 377777 0.86 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 379390 379508 0.98 - 1 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 379560 379706 0.89 - 1 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 381014 381854 0.82 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 384597 384992 0.97 - 2 ID=g57.t1.cds;Parent=g57.t1 --- 2118,2123 ---- ! chrI AUGUSTUS CDS 377090 377583 0.95 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 377691 377777 0.76 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 379390 379508 0.97 - 1 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 379560 379706 0.97 - 1 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 381014 381854 0.78 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 384597 384992 0.98 - 2 ID=g57.t1.cds;Parent=g57.t1 *************** *** 2125,2128 **** ! chrI AUGUSTUS CDS 389884 389960 0.9 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 390885 391161 0.91 - 0 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 392473 392709 0.96 - 0 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 396105 396251 1 - 0 ID=g57.t1.cds;Parent=g57.t1 --- 2125,2128 ---- ! chrI AUGUSTUS CDS 389884 389960 0.92 - 2 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 390885 391161 0.92 - 0 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 392473 392709 0.93 - 0 ID=g57.t1.cds;Parent=g57.t1 ! chrI AUGUSTUS CDS 396105 396251 0.96 - 0 ID=g57.t1.cds;Parent=g57.t1 *************** *** 2138 **** ! chrI AUGUSTUS five_prime_utr 401490 401510 0.73 - . Parent=g57.t1 --- 2138 ---- ! chrI AUGUSTUS five_prime_utr 401490 401510 0.75 - . Parent=g57.t1 *************** *** 2169,2170 **** ! chrI AUGUSTUS gene 402191 409988 0.16 + . ID=g58 ! chrI AUGUSTUS transcript 402191 409988 0.16 + . ID=g58.t1;Parent=g58 --- 2169,2170 ---- ! chrI AUGUSTUS gene 402191 409988 0.2 + . ID=g58 ! chrI AUGUSTUS transcript 402191 409988 0.2 + . ID=g58.t1;Parent=g58 *************** *** 2172 **** ! chrI AUGUSTUS five_prime_utr 402191 402235 0.55 + . Parent=g58.t1 --- 2172 ---- ! chrI AUGUSTUS five_prime_utr 402191 402235 0.57 + . Parent=g58.t1 *************** *** 2176 **** ! chrI AUGUSTUS intron 403440 404645 0.99 + . Parent=g58.t1 --- 2176 ---- ! chrI AUGUSTUS intron 403440 404645 1 + . Parent=g58.t1 *************** *** 2179,2181 **** ! chrI AUGUSTUS intron 408078 408877 0.52 + . Parent=g58.t1 ! chrI AUGUSTUS intron 409022 409282 0.61 + . Parent=g58.t1 ! chrI AUGUSTUS CDS 402236 402325 0.96 + 0 ID=g58.t1.cds;Parent=g58.t1 --- 2179,2181 ---- ! chrI AUGUSTUS intron 408078 408877 0.63 + . Parent=g58.t1 ! chrI AUGUSTUS intron 409022 409282 0.69 + . Parent=g58.t1 ! chrI AUGUSTUS CDS 402236 402325 0.94 + 0 ID=g58.t1.cds;Parent=g58.t1 *************** *** 2183,2184 **** ! chrI AUGUSTUS CDS 403346 403439 0.99 + 2 ID=g58.t1.cds;Parent=g58.t1 ! chrI AUGUSTUS CDS 404646 404970 0.98 + 1 ID=g58.t1.cds;Parent=g58.t1 --- 2183,2184 ---- ! chrI AUGUSTUS CDS 403346 403439 1 + 2 ID=g58.t1.cds;Parent=g58.t1 ! chrI AUGUSTUS CDS 404646 404970 0.99 + 1 ID=g58.t1.cds;Parent=g58.t1 *************** *** 2186,2187 **** ! chrI AUGUSTUS CDS 407823 408077 0.99 + 1 ID=g58.t1.cds;Parent=g58.t1 ! chrI AUGUSTUS CDS 408878 409021 0.52 + 1 ID=g58.t1.cds;Parent=g58.t1 --- 2186,2187 ---- ! chrI AUGUSTUS CDS 407823 408077 0.98 + 1 ID=g58.t1.cds;Parent=g58.t1 ! chrI AUGUSTUS CDS 408878 409021 0.63 + 1 ID=g58.t1.cds;Parent=g58.t1 *************** *** 2190 **** ! chrI AUGUSTUS three_prime_utr 409854 409988 0.58 + . Parent=g58.t1 --- 2190 ---- ! chrI AUGUSTUS three_prime_utr 409854 409988 0.54 + . Parent=g58.t1 *************** *** 2216 **** ! chrI AUGUSTUS five_prime_utr 415091 415133 0.66 + . Parent=g59.t1 --- 2216 ---- ! chrI AUGUSTUS five_prime_utr 415091 415133 0.7 + . Parent=g59.t1 *************** *** 2218,2223 **** ! chrI AUGUSTUS intron 415281 415842 0.84 + . Parent=g59.t1 ! chrI AUGUSTUS intron 415951 417182 0.76 + . Parent=g59.t1 ! chrI AUGUSTUS intron 417576 418371 0.85 + . Parent=g59.t1 ! chrI AUGUSTUS CDS 415134 415280 0.9 + 0 ID=g59.t1.cds;Parent=g59.t1 ! chrI AUGUSTUS CDS 415843 415950 0.76 + 0 ID=g59.t1.cds;Parent=g59.t1 ! chrI AUGUSTUS CDS 417183 417575 0.85 + 0 ID=g59.t1.cds;Parent=g59.t1 --- 2218,2223 ---- ! chrI AUGUSTUS intron 415281 415842 0.88 + . Parent=g59.t1 ! chrI AUGUSTUS intron 415951 417182 0.82 + . Parent=g59.t1 ! chrI AUGUSTUS intron 417576 418371 0.87 + . Parent=g59.t1 ! chrI AUGUSTUS CDS 415134 415280 0.86 + 0 ID=g59.t1.cds;Parent=g59.t1 ! chrI AUGUSTUS CDS 415843 415950 0.83 + 0 ID=g59.t1.cds;Parent=g59.t1 ! chrI AUGUSTUS CDS 417183 417575 0.8 + 0 ID=g59.t1.cds;Parent=g59.t1 *************** *** 2226 **** ! chrI AUGUSTUS three_prime_utr 418459 418516 0.78 + . Parent=g59.t1 --- 2226 ---- ! chrI AUGUSTUS three_prime_utr 418459 418516 0.76 + . Parent=g59.t1 *************** *** 2244,2245 **** ! chrI AUGUSTUS gene 418562 420380 0.21 - . ID=g60 ! chrI AUGUSTUS transcript 418562 420380 0.21 - . ID=g60.t1;Parent=g60 --- 2244,2245 ---- ! chrI AUGUSTUS gene 418562 420380 0.29 - . ID=g60 ! chrI AUGUSTUS transcript 418562 420380 0.29 - . ID=g60.t1;Parent=g60 *************** *** 2247 **** ! chrI AUGUSTUS three_prime_utr 418562 418597 0.49 - . Parent=g60.t1 --- 2247 ---- ! chrI AUGUSTUS three_prime_utr 418562 418597 0.59 - . Parent=g60.t1 *************** *** 2255 **** ! chrI AUGUSTUS five_prime_utr 420348 420380 0.37 - . Parent=g60.t1 --- 2255 ---- ! chrI AUGUSTUS five_prime_utr 420348 420380 0.45 - . Parent=g60.t1 *************** *** 2273,2274 **** ! chrI AUGUSTUS gene 420563 421740 0.43 - . ID=g61 ! chrI AUGUSTUS transcript 420563 421740 0.43 - . ID=g61.t1;Parent=g61 --- 2273,2274 ---- ! chrI AUGUSTUS gene 420563 421740 0.41 - . ID=g61 ! chrI AUGUSTUS transcript 420563 421740 0.41 - . ID=g61.t1;Parent=g61 *************** *** 2276 **** ! chrI AUGUSTUS three_prime_utr 420563 420962 0.77 - . Parent=g61.t1 --- 2276 ---- ! chrI AUGUSTUS three_prime_utr 420563 420962 0.74 - . Parent=g61.t1 *************** *** 2279 **** ! chrI AUGUSTUS intron 421607 421664 0.96 - . Parent=g61.t1 --- 2279 ---- ! chrI AUGUSTUS intron 421607 421664 1 - . Parent=g61.t1 *************** *** 2282 **** ! chrI AUGUSTUS CDS 421665 421698 0.85 - 0 ID=g61.t1.cds;Parent=g61.t1 --- 2282 ---- ! chrI AUGUSTUS CDS 421665 421698 0.91 - 0 ID=g61.t1.cds;Parent=g61.t1 *************** *** 2284 **** ! chrI AUGUSTUS five_prime_utr 421699 421740 0.57 - . Parent=g61.t1 --- 2284 ---- ! chrI AUGUSTUS five_prime_utr 421699 421740 0.54 - . Parent=g61.t1 *************** *** 2301,2302 **** ! chrI AUGUSTUS gene 422336 425140 0.51 - . ID=g62 ! chrI AUGUSTUS transcript 422336 425140 0.51 - . ID=g62.t1;Parent=g62 --- 2301,2302 ---- ! chrI AUGUSTUS gene 422336 425140 0.49 - . ID=g62 ! chrI AUGUSTUS transcript 422336 425140 0.49 - . ID=g62.t1;Parent=g62 *************** *** 2304 **** ! chrI AUGUSTUS three_prime_utr 422336 422405 0.82 - . Parent=g62.t1 --- 2304 ---- ! chrI AUGUSTUS three_prime_utr 422336 422405 0.79 - . Parent=g62.t1 *************** *** 2316 **** ! chrI AUGUSTUS CDS 425009 425074 0.98 - 0 ID=g62.t1.cds;Parent=g62.t1 --- 2316 ---- ! chrI AUGUSTUS CDS 425009 425074 0.97 - 0 ID=g62.t1.cds;Parent=g62.t1 *************** *** 2318 **** ! chrI AUGUSTUS five_prime_utr 425075 425140 0.59 - . Parent=g62.t1 --- 2318 ---- ! chrI AUGUSTUS five_prime_utr 425075 425140 0.63 - . Parent=g62.t1 *************** *** 2337,2338 **** ! chrI AUGUSTUS gene 428991 429566 0.24 + . ID=g63 ! chrI AUGUSTUS transcript 428991 429566 0.24 + . ID=g63.t1;Parent=g63 --- 2337,2338 ---- ! chrI AUGUSTUS gene 428991 429566 0.19 + . ID=g63 ! chrI AUGUSTUS transcript 428991 429566 0.19 + . ID=g63.t1;Parent=g63 *************** *** 2340 **** ! chrI AUGUSTUS five_prime_utr 428991 429015 0.3 + . Parent=g63.t1 --- 2340 ---- ! chrI AUGUSTUS five_prime_utr 428991 429015 0.23 + . Parent=g63.t1 *************** *** 2342 **** ! chrI AUGUSTUS CDS 429016 429285 0.39 + 0 ID=g63.t1.cds;Parent=g63.t1 --- 2342 ---- ! chrI AUGUSTUS CDS 429016 429285 0.29 + 0 ID=g63.t1.cds;Parent=g63.t1 *************** *** 2344 **** ! chrI AUGUSTUS three_prime_utr 429286 429566 0.62 + . Parent=g63.t1 --- 2344 ---- ! chrI AUGUSTUS three_prime_utr 429286 429566 0.54 + . Parent=g63.t1 *************** *** 2359,2360 **** ! chrI AUGUSTUS gene 429675 433660 0.14 - . ID=g64 ! chrI AUGUSTUS transcript 429675 433660 0.14 - . ID=g64.t1;Parent=g64 --- 2359,2360 ---- ! chrI AUGUSTUS gene 429675 433660 0.12 - . ID=g64 ! chrI AUGUSTUS transcript 429675 433660 0.12 - . ID=g64.t1;Parent=g64 *************** *** 2364,2365 **** ! chrI AUGUSTUS intron 429824 429951 0.95 - . Parent=g64.t1 ! chrI AUGUSTUS intron 430138 431415 0.82 - . Parent=g64.t1 --- 2364,2365 ---- ! chrI AUGUSTUS intron 429824 429951 0.97 - . Parent=g64.t1 ! chrI AUGUSTUS intron 430138 431415 0.84 - . Parent=g64.t1 *************** *** 2367 **** ! chrI AUGUSTUS intron 432103 432714 0.37 - . Parent=g64.t1 --- 2367 ---- ! chrI AUGUSTUS intron 432103 432714 0.5 - . Parent=g64.t1 *************** *** 2373 **** ! chrI AUGUSTUS CDS 429952 430137 0.93 - 0 ID=g64.t1.cds;Parent=g64.t1 --- 2373 ---- ! chrI AUGUSTUS CDS 429952 430137 0.97 - 0 ID=g64.t1.cds;Parent=g64.t1 *************** *** 2375,2376 **** ! chrI AUGUSTUS CDS 431798 432102 0.36 - 1 ID=g64.t1.cds;Parent=g64.t1 ! chrI AUGUSTUS CDS 432715 432898 0.37 - 2 ID=g64.t1.cds;Parent=g64.t1 --- 2375,2376 ---- ! chrI AUGUSTUS CDS 431798 432102 0.5 - 1 ID=g64.t1.cds;Parent=g64.t1 ! chrI AUGUSTUS CDS 432715 432898 0.5 - 2 ID=g64.t1.cds;Parent=g64.t1 *************** *** 2380 **** ! chrI AUGUSTUS CDS 433532 433610 0.99 - 0 ID=g64.t1.cds;Parent=g64.t1 --- 2380 ---- ! chrI AUGUSTUS CDS 433532 433610 1 - 0 ID=g64.t1.cds;Parent=g64.t1 *************** *** 2382 **** ! chrI AUGUSTUS five_prime_utr 433611 433660 0.46 - . Parent=g64.t1 --- 2382 ---- ! chrI AUGUSTUS five_prime_utr 433611 433660 0.41 - . Parent=g64.t1 *************** *** 2402,2403 **** ! chrI AUGUSTUS gene 433901 435695 0.26 + . ID=g65 ! chrI AUGUSTUS transcript 433901 435695 0.26 + . ID=g65.t1;Parent=g65 --- 2402,2403 ---- ! chrI AUGUSTUS gene 433901 435695 0.28 + . ID=g65 ! chrI AUGUSTUS transcript 433901 435695 0.28 + . ID=g65.t1;Parent=g65 *************** *** 2405 **** ! chrI AUGUSTUS five_prime_utr 433901 434011 0.39 + . Parent=g65.t1 --- 2405 ---- ! chrI AUGUSTUS five_prime_utr 433901 434011 0.42 + . Parent=g65.t1 *************** *** 2407 **** ! chrI AUGUSTUS intron 434224 434280 0.96 + . Parent=g65.t1 --- 2407 ---- ! chrI AUGUSTUS intron 434224 434280 0.94 + . Parent=g65.t1 *************** *** 2411 **** ! chrI AUGUSTUS CDS 434012 434223 0.96 + 0 ID=g65.t1.cds;Parent=g65.t1 --- 2411 ---- ! chrI AUGUSTUS CDS 434012 434223 0.93 + 0 ID=g65.t1.cds;Parent=g65.t1 *************** *** 2417 **** ! chrI AUGUSTUS three_prime_utr 435577 435695 0.64 + . Parent=g65.t1 --- 2417 ---- ! chrI AUGUSTUS three_prime_utr 435577 435695 0.65 + . Parent=g65.t1 *************** *** 2435,2436 **** ! chrI AUGUSTUS gene 439501 439915 0.01 + . ID=g66 ! chrI AUGUSTUS transcript 439501 439915 0.01 + . ID=g66.t1;Parent=g66 --- 2435,2436 ---- ! chrI AUGUSTUS gene 439501 439915 0.03 + . ID=g66 ! chrI AUGUSTUS transcript 439501 439915 0.03 + . ID=g66.t1;Parent=g66 *************** *** 2438 **** ! chrI AUGUSTUS five_prime_utr 439501 439610 0.16 + . Parent=g66.t1 --- 2438 ---- ! chrI AUGUSTUS five_prime_utr 439501 439610 0.24 + . Parent=g66.t1 *************** *** 2440 **** ! chrI AUGUSTUS CDS 439611 439874 0.35 + 0 ID=g66.t1.cds;Parent=g66.t1 --- 2440 ---- ! chrI AUGUSTUS CDS 439611 439874 0.47 + 0 ID=g66.t1.cds;Parent=g66.t1 *************** *** 2442 **** ! chrI AUGUSTUS three_prime_utr 439875 439915 0.14 + . Parent=g66.t1 --- 2442 ---- ! chrI AUGUSTUS three_prime_utr 439875 439915 0.13 + . Parent=g66.t1 *************** *** 2457,2458 **** ! chrI AUGUSTUS gene 442231 445001 0.1 + . ID=g67 ! chrI AUGUSTUS transcript 442231 445001 0.1 + . ID=g67.t1;Parent=g67 --- 2457,2458 ---- ! chrI AUGUSTUS gene 442231 445001 0.06 + . ID=g67 ! chrI AUGUSTUS transcript 442231 445001 0.06 + . ID=g67.t1;Parent=g67 *************** *** 2460 **** ! chrI AUGUSTUS five_prime_utr 442231 442271 0.44 + . Parent=g67.t1 --- 2460 ---- ! chrI AUGUSTUS five_prime_utr 442231 442271 0.43 + . Parent=g67.t1 *************** *** 2462,2466 **** ! chrI AUGUSTUS intron 442362 442667 0.97 + . Parent=g67.t1 ! chrI AUGUSTUS intron 442933 444732 0.55 + . Parent=g67.t1 ! chrI AUGUSTUS CDS 442272 442361 0.83 + 0 ID=g67.t1.cds;Parent=g67.t1 ! chrI AUGUSTUS CDS 442668 442932 0.77 + 0 ID=g67.t1.cds;Parent=g67.t1 ! chrI AUGUSTUS CDS 444733 444782 0.55 + 2 ID=g67.t1.cds;Parent=g67.t1 --- 2462,2466 ---- ! chrI AUGUSTUS intron 442362 442667 0.96 + . Parent=g67.t1 ! chrI AUGUSTUS intron 442933 444732 0.5 + . Parent=g67.t1 ! chrI AUGUSTUS CDS 442272 442361 0.9 + 0 ID=g67.t1.cds;Parent=g67.t1 ! chrI AUGUSTUS CDS 442668 442932 0.75 + 0 ID=g67.t1.cds;Parent=g67.t1 ! chrI AUGUSTUS CDS 444733 444782 0.5 + 2 ID=g67.t1.cds;Parent=g67.t1 *************** *** 2468 **** ! chrI AUGUSTUS three_prime_utr 444783 445001 0.26 + . Parent=g67.t1 --- 2468 ---- ! chrI AUGUSTUS three_prime_utr 444783 445001 0.18 + . Parent=g67.t1 *************** *** 2484,2485 **** ! chrI AUGUSTUS gene 447151 448414 0.16 + . ID=g68 ! chrI AUGUSTUS transcript 447151 448414 0.16 + . ID=g68.t1;Parent=g68 --- 2484,2485 ---- ! chrI AUGUSTUS gene 447151 448414 0.29 + . ID=g68 ! chrI AUGUSTUS transcript 447151 448414 0.29 + . ID=g68.t1;Parent=g68 *************** *** 2487 **** ! chrI AUGUSTUS five_prime_utr 447151 447315 0.24 + . Parent=g68.t1 --- 2487 ---- ! chrI AUGUSTUS five_prime_utr 447151 447315 0.34 + . Parent=g68.t1 *************** *** 2489,2490 **** ! chrI AUGUSTUS intron 447481 447585 0.9 + . Parent=g68.t1 ! chrI AUGUSTUS intron 447694 447836 0.65 + . Parent=g68.t1 --- 2489,2490 ---- ! chrI AUGUSTUS intron 447481 447585 0.89 + . Parent=g68.t1 ! chrI AUGUSTUS intron 447694 447836 0.69 + . Parent=g68.t1 *************** *** 2492,2494 **** ! chrI AUGUSTUS CDS 447316 447480 0.7 + 0 ID=g68.t1.cds;Parent=g68.t1 ! chrI AUGUSTUS CDS 447586 447693 0.62 + 0 ID=g68.t1.cds;Parent=g68.t1 ! chrI AUGUSTUS CDS 447837 447998 0.94 + 0 ID=g68.t1.cds;Parent=g68.t1 --- 2492,2494 ---- ! chrI AUGUSTUS CDS 447316 447480 0.73 + 0 ID=g68.t1.cds;Parent=g68.t1 ! chrI AUGUSTUS CDS 447586 447693 0.66 + 0 ID=g68.t1.cds;Parent=g68.t1 ! chrI AUGUSTUS CDS 447837 447998 0.96 + 0 ID=g68.t1.cds;Parent=g68.t1 *************** *** 2497 **** ! chrI AUGUSTUS three_prime_utr 448369 448414 0.98 + . Parent=g68.t1 --- 2497 ---- ! chrI AUGUSTUS three_prime_utr 448369 448414 0.97 + . Parent=g68.t1 *************** *** 2516 **** ! chrI AUGUSTUS three_prime_utr 449300 449414 0.61 - . Parent=g69.t1 --- 2516 ---- ! chrI AUGUSTUS three_prime_utr 449300 449414 0.56 - . Parent=g69.t1 *************** *** 2522,2524 **** ! chrI AUGUSTUS intron 450356 450474 0.21 - . Parent=g69.t1 ! chrI AUGUSTUS intron 450576 450619 0.79 - . Parent=g69.t1 ! chrI AUGUSTUS intron 451123 451284 0.42 - . Parent=g69.t1 --- 2522,2524 ---- ! chrI AUGUSTUS intron 450356 450474 0.25 - . Parent=g69.t1 ! chrI AUGUSTUS intron 450576 450619 0.87 - . Parent=g69.t1 ! chrI AUGUSTUS intron 451123 451284 0.49 - . Parent=g69.t1 *************** *** 2528,2530 **** ! chrI AUGUSTUS CDS 449930 450041 1 - 0 ID=g69.t1.cds;Parent=g69.t1 ! chrI AUGUSTUS CDS 450140 450355 0.4 - 0 ID=g69.t1.cds;Parent=g69.t1 ! chrI AUGUSTUS CDS 450475 450575 0.35 - 2 ID=g69.t1.cds;Parent=g69.t1 --- 2528,2530 ---- ! chrI AUGUSTUS CDS 449930 450041 0.99 - 0 ID=g69.t1.cds;Parent=g69.t1 ! chrI AUGUSTUS CDS 450140 450355 0.5 - 0 ID=g69.t1.cds;Parent=g69.t1 ! chrI AUGUSTUS CDS 450475 450575 0.47 - 2 ID=g69.t1.cds;Parent=g69.t1 *************** *** 2532 **** ! chrI AUGUSTUS CDS 451285 451367 0.52 - 0 ID=g69.t1.cds;Parent=g69.t1 --- 2532 ---- ! chrI AUGUSTUS CDS 451285 451367 0.58 - 0 ID=g69.t1.cds;Parent=g69.t1 *************** *** 2534 **** ! chrI AUGUSTUS five_prime_utr 451368 451650 0.18 - . Parent=g69.t1 --- 2534 ---- ! chrI AUGUSTUS five_prime_utr 451368 451650 0.22 - . Parent=g69.t1 *************** *** 2556 **** ! chrI AUGUSTUS three_prime_utr 451898 451974 0.53 - . Parent=g70.t1 --- 2556 ---- ! chrI AUGUSTUS three_prime_utr 451898 451974 0.49 - . Parent=g70.t1 *************** *** 2559,2561 **** ! chrI AUGUSTUS intron 453354 454658 0.93 - . Parent=g70.t1 ! chrI AUGUSTUS intron 454896 455019 0.93 - . Parent=g70.t1 ! chrI AUGUSTUS intron 455094 456054 1 - . Parent=g70.t1 --- 2559,2561 ---- ! chrI AUGUSTUS intron 453354 454658 0.92 - . Parent=g70.t1 ! chrI AUGUSTUS intron 454896 455019 0.92 - . Parent=g70.t1 ! chrI AUGUSTUS intron 455094 456054 0.99 - . Parent=g70.t1 *************** *** 2564 **** ! chrI AUGUSTUS CDS 454659 454895 0.93 - 0 ID=g70.t1.cds;Parent=g70.t1 --- 2564 ---- ! chrI AUGUSTUS CDS 454659 454895 0.92 - 0 ID=g70.t1.cds;Parent=g70.t1 *************** *** 2566 **** ! chrI AUGUSTUS CDS 456055 456445 0.56 - 0 ID=g70.t1.cds;Parent=g70.t1 --- 2566 ---- ! chrI AUGUSTUS CDS 456055 456445 0.48 - 0 ID=g70.t1.cds;Parent=g70.t1 *************** *** 2568 **** ! chrI AUGUSTUS five_prime_utr 456446 456570 0.2 - . Parent=g70.t1 --- 2568 ---- ! chrI AUGUSTUS five_prime_utr 456446 456570 0.23 - . Parent=g70.t1 *************** *** 2587,2588 **** ! chrI AUGUSTUS gene 468788 482350 0.32 - . ID=g71 ! chrI AUGUSTUS transcript 468788 482350 0.32 - . ID=g71.t1;Parent=g71 --- 2587,2588 ---- ! chrI AUGUSTUS gene 468788 482350 0.38 - . ID=g71 ! chrI AUGUSTUS transcript 468788 482350 0.38 - . ID=g71.t1;Parent=g71 *************** *** 2590 **** ! chrI AUGUSTUS three_prime_utr 468788 468965 0.86 - . Parent=g71.t1 --- 2590 ---- ! chrI AUGUSTUS three_prime_utr 468788 468965 0.9 - . Parent=g71.t1 *************** *** 2593,2594 **** ! chrI AUGUSTUS intron 471064 472449 0.47 - . Parent=g71.t1 ! chrI AUGUSTUS intron 472506 473311 0.77 - . Parent=g71.t1 --- 2593,2594 ---- ! chrI AUGUSTUS intron 471064 472449 0.5 - . Parent=g71.t1 ! chrI AUGUSTUS intron 472506 473311 0.73 - . Parent=g71.t1 *************** *** 2597,2598 **** ! chrI AUGUSTUS intron 478802 480304 0.99 - . Parent=g71.t1 ! chrI AUGUSTUS intron 480570 482217 0.98 - . Parent=g71.t1 --- 2597,2598 ---- ! chrI AUGUSTUS intron 478802 480304 0.96 - . Parent=g71.t1 ! chrI AUGUSTUS intron 480570 482217 1 - . Parent=g71.t1 *************** *** 2601,2602 **** ! chrI AUGUSTUS CDS 472450 472505 0.63 - 0 ID=g71.t1.cds;Parent=g71.t1 ! chrI AUGUSTUS CDS 473312 473662 0.99 - 0 ID=g71.t1.cds;Parent=g71.t1 --- 2601,2602 ---- ! chrI AUGUSTUS CDS 472450 472505 0.56 - 0 ID=g71.t1.cds;Parent=g71.t1 ! chrI AUGUSTUS CDS 473312 473662 1 - 0 ID=g71.t1.cds;Parent=g71.t1 *************** *** 2604,2606 **** ! chrI AUGUSTUS CDS 478229 478801 0.99 - 2 ID=g71.t1.cds;Parent=g71.t1 ! chrI AUGUSTUS CDS 480305 480569 0.98 - 0 ID=g71.t1.cds;Parent=g71.t1 ! chrI AUGUSTUS CDS 482218 482274 0.91 - 0 ID=g71.t1.cds;Parent=g71.t1 --- 2604,2606 ---- ! chrI AUGUSTUS CDS 478229 478801 0.96 - 2 ID=g71.t1.cds;Parent=g71.t1 ! chrI AUGUSTUS CDS 480305 480569 1 - 0 ID=g71.t1.cds;Parent=g71.t1 ! chrI AUGUSTUS CDS 482218 482274 0.95 - 0 ID=g71.t1.cds;Parent=g71.t1 *************** *** 2608 **** ! chrI AUGUSTUS five_prime_utr 482275 482350 0.74 - . Parent=g71.t1 --- 2608 ---- ! chrI AUGUSTUS five_prime_utr 482275 482350 0.82 - . Parent=g71.t1 *************** *** 2631,2632 **** ! chrI AUGUSTUS gene 483181 483729 0.45 + . ID=g72 ! chrI AUGUSTUS transcript 483181 483729 0.45 + . ID=g72.t1;Parent=g72 --- 2631,2632 ---- ! chrI AUGUSTUS gene 483181 483729 0.49 + . ID=g72 ! chrI AUGUSTUS transcript 483181 483729 0.49 + . ID=g72.t1;Parent=g72 *************** *** 2634 **** ! chrI AUGUSTUS five_prime_utr 483181 483203 0.46 + . Parent=g72.t1 --- 2634 ---- ! chrI AUGUSTUS five_prime_utr 483181 483203 0.49 + . Parent=g72.t1 *************** *** 2636 **** ! chrI AUGUSTUS CDS 483204 483653 0.95 + 0 ID=g72.t1.cds;Parent=g72.t1 --- 2636 ---- ! chrI AUGUSTUS CDS 483204 483653 0.93 + 0 ID=g72.t1.cds;Parent=g72.t1 *************** *** 2653,2654 **** ! chrI AUGUSTUS gene 485801 497384 0.09 + . ID=g73 ! chrI AUGUSTUS transcript 485801 497384 0.09 + . ID=g73.t1;Parent=g73 --- 2653,2654 ---- ! chrI AUGUSTUS gene 485801 497384 0.15 + . ID=g73 ! chrI AUGUSTUS transcript 485801 497384 0.15 + . ID=g73.t1;Parent=g73 *************** *** 2656 **** ! chrI AUGUSTUS five_prime_utr 485801 485869 0.93 + . Parent=g73.t1 --- 2656 ---- ! chrI AUGUSTUS five_prime_utr 485801 485869 0.89 + . Parent=g73.t1 *************** *** 2660 **** ! chrI AUGUSTUS intron 488568 489976 0.16 + . Parent=g73.t1 --- 2660 ---- ! chrI AUGUSTUS intron 488568 489976 0.21 + . Parent=g73.t1 *************** *** 2662,2665 **** ! chrI AUGUSTUS intron 490859 492608 0.96 + . Parent=g73.t1 ! chrI AUGUSTUS intron 492969 494936 0.89 + . Parent=g73.t1 ! chrI AUGUSTUS intron 495300 496668 0.8 + . Parent=g73.t1 ! chrI AUGUSTUS CDS 485870 486005 1 + 0 ID=g73.t1.cds;Parent=g73.t1 --- 2662,2665 ---- ! chrI AUGUSTUS intron 490859 492608 0.98 + . Parent=g73.t1 ! chrI AUGUSTUS intron 492969 494936 0.88 + . Parent=g73.t1 ! chrI AUGUSTUS intron 495300 496668 0.76 + . Parent=g73.t1 ! chrI AUGUSTUS CDS 485870 486005 0.99 + 0 ID=g73.t1.cds;Parent=g73.t1 *************** *** 2668,2669 **** ! chrI AUGUSTUS CDS 489977 490191 0.16 + 2 ID=g73.t1.cds;Parent=g73.t1 ! chrI AUGUSTUS CDS 490238 490858 0.97 + 0 ID=g73.t1.cds;Parent=g73.t1 --- 2668,2669 ---- ! chrI AUGUSTUS CDS 489977 490191 0.21 + 2 ID=g73.t1.cds;Parent=g73.t1 ! chrI AUGUSTUS CDS 490238 490858 0.99 + 0 ID=g73.t1.cds;Parent=g73.t1 *************** *** 2671 **** ! chrI AUGUSTUS CDS 494937 495299 0.8 + 0 ID=g73.t1.cds;Parent=g73.t1 --- 2671 ---- ! chrI AUGUSTUS CDS 494937 495299 0.76 + 0 ID=g73.t1.cds;Parent=g73.t1 *************** *** 2674 **** ! chrI AUGUSTUS three_prime_utr 497263 497384 0.95 + . Parent=g73.t1 --- 2674 ---- ! chrI AUGUSTUS three_prime_utr 497263 497384 0.98 + . Parent=g73.t1 *************** *** 2699,2700 **** ! chrI AUGUSTUS gene 498101 506255 0.23 + . ID=g74 ! chrI AUGUSTUS transcript 498101 506255 0.23 + . ID=g74.t1;Parent=g74 --- 2699,2700 ---- ! chrI AUGUSTUS gene 498101 506255 0.25 + . ID=g74 ! chrI AUGUSTUS transcript 498101 506255 0.25 + . ID=g74.t1;Parent=g74 *************** *** 2702 **** ! chrI AUGUSTUS five_prime_utr 498101 498136 0.81 + . Parent=g74.t1 --- 2702 ---- ! chrI AUGUSTUS five_prime_utr 498101 498136 0.83 + . Parent=g74.t1 *************** *** 2709 **** ! chrI AUGUSTUS CDS 498137 498428 0.99 + 0 ID=g74.t1.cds;Parent=g74.t1 --- 2709 ---- ! chrI AUGUSTUS CDS 498137 498428 1 + 0 ID=g74.t1.cds;Parent=g74.t1 *************** *** 2716,2717 **** ! chrI AUGUSTUS three_prime_utr 505684 505704 0.91 + . Parent=g74.t1 ! chrI AUGUSTUS three_prime_utr 505961 506255 0.31 + . Parent=g74.t1 --- 2716,2717 ---- ! chrI AUGUSTUS three_prime_utr 505684 505704 0.89 + . Parent=g74.t1 ! chrI AUGUSTUS three_prime_utr 505961 506255 0.3 + . Parent=g74.t1 *************** *** 2737,2738 **** ! chrI AUGUSTUS gene 510942 511710 0.03 - . ID=g75 ! chrI AUGUSTUS transcript 510942 511710 0.03 - . ID=g75.t1;Parent=g75 --- 2737,2738 ---- ! chrI AUGUSTUS gene 510942 511710 0.02 - . ID=g75 ! chrI AUGUSTUS transcript 510942 511710 0.02 - . ID=g75.t1;Parent=g75 *************** *** 2740 **** ! chrI AUGUSTUS three_prime_utr 510942 510990 0.22 - . Parent=g75.t1 --- 2740 ---- ! chrI AUGUSTUS three_prime_utr 510942 510990 0.2 - . Parent=g75.t1 *************** *** 2742,2744 **** ! chrI AUGUSTUS intron 511279 511558 0.84 - . Parent=g75.t1 ! chrI AUGUSTUS CDS 510991 511278 0.21 - 0 ID=g75.t1.cds;Parent=g75.t1 ! chrI AUGUSTUS CDS 511559 511684 0.8 - 0 ID=g75.t1.cds;Parent=g75.t1 --- 2742,2744 ---- ! chrI AUGUSTUS intron 511279 511558 0.83 - . Parent=g75.t1 ! chrI AUGUSTUS CDS 510991 511278 0.22 - 0 ID=g75.t1.cds;Parent=g75.t1 ! chrI AUGUSTUS CDS 511559 511684 0.81 - 0 ID=g75.t1.cds;Parent=g75.t1 *************** *** 2746 **** ! chrI AUGUSTUS five_prime_utr 511685 511710 0.3 - . Parent=g75.t1 --- 2746 ---- ! chrI AUGUSTUS five_prime_utr 511685 511710 0.23 - . Parent=g75.t1 *************** *** 2762,2763 **** ! chrI AUGUSTUS gene 537110 542115 0.11 + . ID=g76 ! chrI AUGUSTUS transcript 537110 542115 0.11 + . ID=g76.t1;Parent=g76 --- 2762,2763 ---- ! chrI AUGUSTUS gene 537110 542115 0.07 + . ID=g76 ! chrI AUGUSTUS transcript 537110 542115 0.07 + . ID=g76.t1;Parent=g76 *************** *** 2765 **** ! chrI AUGUSTUS five_prime_utr 537110 537191 0.22 + . Parent=g76.t1 --- 2765 ---- ! chrI AUGUSTUS five_prime_utr 537110 537191 0.26 + . Parent=g76.t1 *************** *** 2767 **** ! chrI AUGUSTUS intron 537213 537811 0.44 + . Parent=g76.t1 --- 2767 ---- ! chrI AUGUSTUS intron 537213 537811 0.42 + . Parent=g76.t1 *************** *** 2769,2770 **** ! chrI AUGUSTUS intron 539062 540409 0.98 + . Parent=g76.t1 ! chrI AUGUSTUS intron 540747 541580 1 + . Parent=g76.t1 --- 2769,2770 ---- ! chrI AUGUSTUS intron 539062 540409 0.97 + . Parent=g76.t1 ! chrI AUGUSTUS intron 540747 541580 0.99 + . Parent=g76.t1 *************** *** 2772,2774 **** ! chrI AUGUSTUS CDS 537192 537212 0.44 + 0 ID=g76.t1.cds;Parent=g76.t1 ! chrI AUGUSTUS CDS 537812 538140 0.53 + 0 ID=g76.t1.cds;Parent=g76.t1 ! chrI AUGUSTUS CDS 538769 539061 0.98 + 1 ID=g76.t1.cds;Parent=g76.t1 --- 2772,2774 ---- ! chrI AUGUSTUS CDS 537192 537212 0.42 + 0 ID=g76.t1.cds;Parent=g76.t1 ! chrI AUGUSTUS CDS 537812 538140 0.5 + 0 ID=g76.t1.cds;Parent=g76.t1 ! chrI AUGUSTUS CDS 538769 539061 0.97 + 1 ID=g76.t1.cds;Parent=g76.t1 *************** *** 2776 **** ! chrI AUGUSTUS CDS 541581 541668 1 + 1 ID=g76.t1.cds;Parent=g76.t1 --- 2776 ---- ! chrI AUGUSTUS CDS 541581 541668 0.99 + 1 ID=g76.t1.cds;Parent=g76.t1 *************** *** 2779 **** ! chrI AUGUSTUS three_prime_utr 541850 542115 0.33 + . Parent=g76.t1 --- 2779 ---- ! chrI AUGUSTUS three_prime_utr 541850 542115 0.27 + . Parent=g76.t1 *************** *** 2798,2799 **** ! chrI AUGUSTUS gene 544710 546186 0.24 + . ID=g77 ! chrI AUGUSTUS transcript 544710 546186 0.24 + . ID=g77.t1;Parent=g77 --- 2798,2799 ---- ! chrI AUGUSTUS gene 544710 546186 0.18 + . ID=g77 ! chrI AUGUSTUS transcript 544710 546186 0.18 + . ID=g77.t1;Parent=g77 *************** *** 2801 **** ! chrI AUGUSTUS five_prime_utr 544710 544773 0.36 + . Parent=g77.t1 --- 2801 ---- ! chrI AUGUSTUS five_prime_utr 544710 544773 0.25 + . Parent=g77.t1 *************** *** 2805 **** ! chrI AUGUSTUS intron 545865 545941 0.92 + . Parent=g77.t1 --- 2805 ---- ! chrI AUGUSTUS intron 545865 545941 0.9 + . Parent=g77.t1 *************** *** 2811 **** ! chrI AUGUSTUS three_prime_utr 546155 546186 0.86 + . Parent=g77.t1 --- 2811 ---- ! chrI AUGUSTUS three_prime_utr 546155 546186 0.79 + . Parent=g77.t1 *************** *** 2831 **** ! chrI AUGUSTUS three_prime_utr 546861 546966 0.86 - . Parent=g78.t1 --- 2831 ---- ! chrI AUGUSTUS three_prime_utr 546861 546966 0.76 - . Parent=g78.t1 *************** *** 2834 **** ! chrI AUGUSTUS intron 547334 548121 0.98 - . Parent=g78.t1 --- 2834 ---- ! chrI AUGUSTUS intron 547334 548121 0.99 - . Parent=g78.t1 *************** *** 2837 **** ! chrI AUGUSTUS CDS 548122 548226 0.35 - 0 ID=g78.t1.cds;Parent=g78.t1 --- 2837 ---- ! chrI AUGUSTUS CDS 548122 548226 0.32 - 0 ID=g78.t1.cds;Parent=g78.t1 *************** *** 2855,2856 **** ! chrI AUGUSTUS gene 549240 550622 0.66 + . ID=g79 ! chrI AUGUSTUS transcript 549240 550622 0.66 + . ID=g79.t1;Parent=g79 --- 2855,2856 ---- ! chrI AUGUSTUS gene 549240 550622 0.65 + . ID=g79 ! chrI AUGUSTUS transcript 549240 550622 0.65 + . ID=g79.t1;Parent=g79 *************** *** 2858 **** ! chrI AUGUSTUS five_prime_utr 549240 549296 0.86 + . Parent=g79.t1 --- 2858 ---- ! chrI AUGUSTUS five_prime_utr 549240 549296 0.85 + . Parent=g79.t1 *************** *** 2860 **** ! chrI AUGUSTUS intron 549340 549774 0.99 + . Parent=g79.t1 --- 2860 ---- ! chrI AUGUSTUS intron 549340 549774 0.97 + . Parent=g79.t1 *************** *** 2863 **** ! chrI AUGUSTUS CDS 549297 549339 0.94 + 0 ID=g79.t1.cds;Parent=g79.t1 --- 2863 ---- ! chrI AUGUSTUS CDS 549297 549339 0.97 + 0 ID=g79.t1.cds;Parent=g79.t1 *************** *** 2868 **** ! chrI AUGUSTUS three_prime_utr 550545 550622 0.8 + . Parent=g79.t1 --- 2868 ---- ! chrI AUGUSTUS three_prime_utr 550545 550622 0.79 + . Parent=g79.t1 *************** *** 2885,2886 **** ! chrI AUGUSTUS gene 551261 551649 0.37 - . ID=g80 ! chrI AUGUSTUS transcript 551261 551649 0.37 - . ID=g80.t1;Parent=g80 --- 2885,2886 ---- ! chrI AUGUSTUS gene 551261 551649 0.35 - . ID=g80 ! chrI AUGUSTUS transcript 551261 551649 0.35 - . ID=g80.t1;Parent=g80 *************** *** 2892 **** ! chrI AUGUSTUS five_prime_utr 551592 551649 0.42 - . Parent=g80.t1 --- 2892 ---- ! chrI AUGUSTUS five_prime_utr 551592 551649 0.43 - . Parent=g80.t1 *************** *** 2909 **** ! chrI AUGUSTUS five_prime_utr 553040 553094 0.33 + . Parent=g81.t1 --- 2909 ---- ! chrI AUGUSTUS five_prime_utr 553040 553094 0.42 + . Parent=g81.t1 *************** *** 2911 **** ! chrI AUGUSTUS intron 553437 555147 0.82 + . Parent=g81.t1 --- 2911 ---- ! chrI AUGUSTUS intron 553437 555147 0.84 + . Parent=g81.t1 *************** *** 2913,2915 **** ! chrI AUGUSTUS intron 556390 556440 0.92 + . Parent=g81.t1 ! chrI AUGUSTUS intron 556532 556600 0.91 + . Parent=g81.t1 ! chrI AUGUSTUS intron 556772 556873 0.95 + . Parent=g81.t1 --- 2913,2915 ---- ! chrI AUGUSTUS intron 556390 556440 0.94 + . Parent=g81.t1 ! chrI AUGUSTUS intron 556532 556600 0.96 + . Parent=g81.t1 ! chrI AUGUSTUS intron 556772 556873 0.89 + . Parent=g81.t1 *************** *** 2917,2918 **** ! chrI AUGUSTUS CDS 553095 553436 0.81 + 0 ID=g81.t1.cds;Parent=g81.t1 ! chrI AUGUSTUS CDS 555148 555212 0.87 + 0 ID=g81.t1.cds;Parent=g81.t1 --- 2917,2918 ---- ! chrI AUGUSTUS CDS 553095 553436 0.82 + 0 ID=g81.t1.cds;Parent=g81.t1 ! chrI AUGUSTUS CDS 555148 555212 0.89 + 0 ID=g81.t1.cds;Parent=g81.t1 *************** *** 2920,2922 **** ! chrI AUGUSTUS CDS 556441 556531 0.95 + 1 ID=g81.t1.cds;Parent=g81.t1 ! chrI AUGUSTUS CDS 556601 556771 0.94 + 0 ID=g81.t1.cds;Parent=g81.t1 ! chrI AUGUSTUS CDS 556874 557016 0.95 + 0 ID=g81.t1.cds;Parent=g81.t1 --- 2920,2922 ---- ! chrI AUGUSTUS CDS 556441 556531 0.96 + 1 ID=g81.t1.cds;Parent=g81.t1 ! chrI AUGUSTUS CDS 556601 556771 1 + 0 ID=g81.t1.cds;Parent=g81.t1 ! chrI AUGUSTUS CDS 556874 557016 0.87 + 0 ID=g81.t1.cds;Parent=g81.t1 *************** *** 2945,2946 **** ! chrI AUGUSTUS gene 558160 561878 0.12 + . ID=g82 ! chrI AUGUSTUS transcript 558160 561878 0.12 + . ID=g82.t1;Parent=g82 --- 2945,2946 ---- ! chrI AUGUSTUS gene 558160 561878 0.11 + . ID=g82 ! chrI AUGUSTUS transcript 558160 561878 0.11 + . ID=g82.t1;Parent=g82 *************** *** 2948 **** ! chrI AUGUSTUS five_prime_utr 558160 558195 0.8 + . Parent=g82.t1 --- 2948 ---- ! chrI AUGUSTUS five_prime_utr 558160 558195 0.81 + . Parent=g82.t1 *************** *** 2951 **** ! chrI AUGUSTUS intron 558729 558774 0.99 + . Parent=g82.t1 --- 2951 ---- ! chrI AUGUSTUS intron 558729 558774 1 + . Parent=g82.t1 *************** *** 2954 **** ! chrI AUGUSTUS intron 559991 560888 0.7 + . Parent=g82.t1 --- 2954 ---- ! chrI AUGUSTUS intron 559991 560888 0.75 + . Parent=g82.t1 *************** *** 2956,2957 **** ! chrI AUGUSTUS intron 561197 561348 0.8 + . Parent=g82.t1 ! chrI AUGUSTUS intron 561480 561526 0.8 + . Parent=g82.t1 --- 2956,2957 ---- ! chrI AUGUSTUS intron 561197 561348 0.81 + . Parent=g82.t1 ! chrI AUGUSTUS intron 561480 561526 0.81 + . Parent=g82.t1 *************** *** 2960 **** ! chrI AUGUSTUS CDS 558775 558945 0.99 + 0 ID=g82.t1.cds;Parent=g82.t1 --- 2960 ---- ! chrI AUGUSTUS CDS 558775 558945 1 + 0 ID=g82.t1.cds;Parent=g82.t1 *************** *** 2962 **** ! chrI AUGUSTUS CDS 559820 559990 0.7 + 1 ID=g82.t1.cds;Parent=g82.t1 --- 2962 ---- ! chrI AUGUSTUS CDS 559820 559990 0.75 + 1 ID=g82.t1.cds;Parent=g82.t1 *************** *** 2964,2966 **** ! chrI AUGUSTUS CDS 561026 561196 0.99 + 0 ID=g82.t1.cds;Parent=g82.t1 ! chrI AUGUSTUS CDS 561349 561479 0.8 + 0 ID=g82.t1.cds;Parent=g82.t1 ! chrI AUGUSTUS CDS 561527 561821 0.74 + 1 ID=g82.t1.cds;Parent=g82.t1 --- 2964,2966 ---- ! chrI AUGUSTUS CDS 561026 561196 1 + 0 ID=g82.t1.cds;Parent=g82.t1 ! chrI AUGUSTUS CDS 561349 561479 0.81 + 0 ID=g82.t1.cds;Parent=g82.t1 ! chrI AUGUSTUS CDS 561527 561821 0.76 + 1 ID=g82.t1.cds;Parent=g82.t1 *************** *** 2968 **** ! chrI AUGUSTUS three_prime_utr 561822 561878 0.2 + . Parent=g82.t1 --- 2968 ---- ! chrI AUGUSTUS three_prime_utr 561822 561878 0.22 + . Parent=g82.t1 *************** *** 2988,2989 **** ! chrI AUGUSTUS gene 562620 564368 0.25 + . ID=g83 ! chrI AUGUSTUS transcript 562620 564368 0.25 + . ID=g83.t1;Parent=g83 --- 2988,2989 ---- ! chrI AUGUSTUS gene 562620 564368 0.21 + . ID=g83 ! chrI AUGUSTUS transcript 562620 564368 0.21 + . ID=g83.t1;Parent=g83 *************** *** 2991 **** ! chrI AUGUSTUS five_prime_utr 562620 562668 0.48 + . Parent=g83.t1 --- 2991 ---- ! chrI AUGUSTUS five_prime_utr 562620 562668 0.4 + . Parent=g83.t1 *************** *** 2993 **** ! chrI AUGUSTUS CDS 562669 562998 0.97 + 0 ID=g83.t1.cds;Parent=g83.t1 --- 2993 ---- ! chrI AUGUSTUS CDS 562669 562998 0.96 + 0 ID=g83.t1.cds;Parent=g83.t1 *************** *** 2995,2996 **** ! chrI AUGUSTUS three_prime_utr 562999 563096 0.8 + . Parent=g83.t1 ! chrI AUGUSTUS three_prime_utr 564153 564368 0.58 + . Parent=g83.t1 --- 2995,2996 ---- ! chrI AUGUSTUS three_prime_utr 562999 563096 0.7 + . Parent=g83.t1 ! chrI AUGUSTUS three_prime_utr 564153 564368 0.6 + . Parent=g83.t1 *************** *** 3013,3014 **** ! chrI AUGUSTUS gene 567530 568264 0.1 + . ID=g84 ! chrI AUGUSTUS transcript 567530 568264 0.1 + . ID=g84.t1;Parent=g84 --- 3013,3014 ---- ! chrI AUGUSTUS gene 567530 568264 0.18 + . ID=g84 ! chrI AUGUSTUS transcript 567530 568264 0.18 + . ID=g84.t1;Parent=g84 *************** *** 3016 **** ! chrI AUGUSTUS five_prime_utr 567530 567806 0.25 + . Parent=g84.t1 --- 3016 ---- ! chrI AUGUSTUS five_prime_utr 567530 567806 0.35 + . Parent=g84.t1 *************** *** 3020 **** ! chrI AUGUSTUS CDS 567807 567967 0.32 + 0 ID=g84.t1.cds;Parent=g84.t1 --- 3020 ---- ! chrI AUGUSTUS CDS 567807 567967 0.45 + 0 ID=g84.t1.cds;Parent=g84.t1 *************** *** 3024 **** ! chrI AUGUSTUS three_prime_utr 568222 568264 0.38 + . Parent=g84.t1 --- 3024 ---- ! chrI AUGUSTUS three_prime_utr 568222 568264 0.4 + . Parent=g84.t1 *************** *** 3039,3040 **** ! chrI AUGUSTUS gene 568840 570774 0.29 + . ID=g85 ! chrI AUGUSTUS transcript 568840 570774 0.29 + . ID=g85.t1;Parent=g85 --- 3039,3040 ---- ! chrI AUGUSTUS gene 568840 570774 0.33 + . ID=g85 ! chrI AUGUSTUS transcript 568840 570774 0.33 + . ID=g85.t1;Parent=g85 *************** *** 3042 **** ! chrI AUGUSTUS five_prime_utr 568840 568872 0.35 + . Parent=g85.t1 --- 3042 ---- ! chrI AUGUSTUS five_prime_utr 568840 568872 0.36 + . Parent=g85.t1 *************** *** 3044,3052 **** ! chrI AUGUSTUS intron 568960 569837 0.97 + . Parent=g85.t1 ! chrI AUGUSTUS intron 570027 570072 0.91 + . Parent=g85.t1 ! chrI AUGUSTUS intron 570146 570510 0.91 + . Parent=g85.t1 ! chrI AUGUSTUS intron 570598 570646 0.99 + . Parent=g85.t1 ! chrI AUGUSTUS CDS 568873 568959 0.9 + 0 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 569838 570026 0.91 + 0 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 570073 570145 0.91 + 0 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 570511 570597 0.99 + 2 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 570647 570747 0.99 + 2 ID=g85.t1.cds;Parent=g85.t1 --- 3044,3052 ---- ! chrI AUGUSTUS intron 568960 569837 0.98 + . Parent=g85.t1 ! chrI AUGUSTUS intron 570027 570072 0.94 + . Parent=g85.t1 ! chrI AUGUSTUS intron 570146 570510 0.95 + . Parent=g85.t1 ! chrI AUGUSTUS intron 570598 570646 1 + . Parent=g85.t1 ! chrI AUGUSTUS CDS 568873 568959 0.93 + 0 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 569838 570026 0.95 + 0 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 570073 570145 0.94 + 0 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 570511 570597 1 + 2 ID=g85.t1.cds;Parent=g85.t1 ! chrI AUGUSTUS CDS 570647 570747 1 + 2 ID=g85.t1.cds;Parent=g85.t1 *************** *** 3054 **** ! chrI AUGUSTUS three_prime_utr 570748 570774 0.91 + . Parent=g85.t1 --- 3054 ---- ! chrI AUGUSTUS three_prime_utr 570748 570774 0.89 + . Parent=g85.t1 *************** *** 3071,3072 **** ! chrI AUGUSTUS gene 571763 576039 0.21 - . ID=g86 ! chrI AUGUSTUS transcript 571763 576039 0.21 - . ID=g86.t1;Parent=g86 --- 3071,3072 ---- ! chrI AUGUSTUS gene 571763 576039 0.14 - . ID=g86 ! chrI AUGUSTUS transcript 571763 576039 0.14 - . ID=g86.t1;Parent=g86 *************** *** 3074 **** ! chrI AUGUSTUS three_prime_utr 571763 571988 0.22 - . Parent=g86.t1 --- 3074 ---- ! chrI AUGUSTUS three_prime_utr 571763 571988 0.17 - . Parent=g86.t1 *************** *** 3078,3079 **** ! chrI AUGUSTUS intron 572521 572570 1 - . Parent=g86.t1 ! chrI AUGUSTUS intron 572738 573741 1 - . Parent=g86.t1 --- 3078,3079 ---- ! chrI AUGUSTUS intron 572521 572570 0.98 - . Parent=g86.t1 ! chrI AUGUSTUS intron 572738 573741 0.98 - . Parent=g86.t1 *************** *** 3082 **** ! chrI AUGUSTUS intron 574446 574521 0.99 - . Parent=g86.t1 --- 3082 ---- ! chrI AUGUSTUS intron 574446 574521 1 - . Parent=g86.t1 *************** *** 3087,3088 **** ! chrI AUGUSTUS CDS 572357 572520 1 - 1 ID=g86.t1.cds;Parent=g86.t1 ! chrI AUGUSTUS CDS 572571 572737 1 - 0 ID=g86.t1.cds;Parent=g86.t1 --- 3087,3088 ---- ! chrI AUGUSTUS CDS 572357 572520 0.98 - 1 ID=g86.t1.cds;Parent=g86.t1 ! chrI AUGUSTUS CDS 572571 572737 0.98 - 0 ID=g86.t1.cds;Parent=g86.t1 *************** *** 3091 **** ! chrI AUGUSTUS CDS 574314 574445 0.99 - 2 ID=g86.t1.cds;Parent=g86.t1 --- 3091 ---- ! chrI AUGUSTUS CDS 574314 574445 1 - 2 ID=g86.t1.cds;Parent=g86.t1 *************** *** 3094 **** ! chrI AUGUSTUS CDS 575842 576007 0.87 - 0 ID=g86.t1.cds;Parent=g86.t1 --- 3094 ---- ! chrI AUGUSTUS CDS 575842 576007 0.92 - 0 ID=g86.t1.cds;Parent=g86.t1 *************** *** 3096 **** ! chrI AUGUSTUS five_prime_utr 576008 576039 0.86 - . Parent=g86.t1 --- 3096 ---- ! chrI AUGUSTUS five_prime_utr 576008 576039 0.85 - . Parent=g86.t1 *************** *** 3117,3118 **** ! chrI AUGUSTUS gene 581031 586219 0.04 - . ID=g87 ! chrI AUGUSTUS transcript 581031 586219 0.04 - . ID=g87.t1;Parent=g87 --- 3117,3118 ---- ! chrI AUGUSTUS gene 581031 586219 0.08 - . ID=g87 ! chrI AUGUSTUS transcript 581031 586219 0.08 - . ID=g87.t1;Parent=g87 *************** *** 3120 **** ! chrI AUGUSTUS three_prime_utr 581031 581203 0.3 - . Parent=g87.t1 --- 3120 ---- ! chrI AUGUSTUS three_prime_utr 581031 581203 0.28 - . Parent=g87.t1 *************** *** 3128 **** ! chrI AUGUSTUS CDS 585942 586123 0.99 - 0 ID=g87.t1.cds;Parent=g87.t1 --- 3128 ---- ! chrI AUGUSTUS CDS 585942 586123 1 - 0 ID=g87.t1.cds;Parent=g87.t1 *************** *** 3130 **** ! chrI AUGUSTUS five_prime_utr 586124 586219 0.19 - . Parent=g87.t1 --- 3130 ---- ! chrI AUGUSTUS five_prime_utr 586124 586219 0.27 - . Parent=g87.t1 *************** *** 3148,3149 **** ! chrI AUGUSTUS gene 587530 595359 0.02 - . ID=g88 ! chrI AUGUSTUS transcript 587530 595359 0.02 - . ID=g88.t1;Parent=g88 --- 3148,3149 ---- ! chrI AUGUSTUS gene 587530 595359 0.04 - . ID=g88 ! chrI AUGUSTUS transcript 587530 595359 0.04 - . ID=g88.t1;Parent=g88 *************** *** 3153,3158 **** ! chrI AUGUSTUS intron 587838 589052 0.94 - . Parent=g88.t1 ! chrI AUGUSTUS intron 589269 589449 0.55 - . Parent=g88.t1 ! chrI AUGUSTUS intron 589638 589689 0.98 - . Parent=g88.t1 ! chrI AUGUSTUS intron 589810 590535 0.99 - . Parent=g88.t1 ! chrI AUGUSTUS intron 590952 591001 0.59 - . Parent=g88.t1 ! chrI AUGUSTUS intron 591146 591887 0.57 - . Parent=g88.t1 --- 3153,3158 ---- ! chrI AUGUSTUS intron 587838 589052 0.96 - . Parent=g88.t1 ! chrI AUGUSTUS intron 589269 589449 0.67 - . Parent=g88.t1 ! chrI AUGUSTUS intron 589638 589689 0.99 - . Parent=g88.t1 ! chrI AUGUSTUS intron 589810 590535 1 - . Parent=g88.t1 ! chrI AUGUSTUS intron 590952 591001 0.58 - . Parent=g88.t1 ! chrI AUGUSTUS intron 591146 591887 0.53 - . Parent=g88.t1 *************** *** 3160 **** ! chrI AUGUSTUS intron 592617 593495 0.95 - . Parent=g88.t1 --- 3160 ---- ! chrI AUGUSTUS intron 592617 593495 0.97 - . Parent=g88.t1 *************** *** 3164,3171 **** ! chrI AUGUSTUS intron 594533 595200 0.77 - . Parent=g88.t1 ! chrI AUGUSTUS CDS 587707 587837 0.98 - 2 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 589053 589268 0.52 - 2 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 589450 589637 1 - 1 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 589690 589809 0.98 - 1 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 590536 590951 0.99 - 0 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 591002 591145 0.59 - 0 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 591888 592388 1 - 0 ID=g88.t1.cds;Parent=g88.t1 --- 3164,3171 ---- ! chrI AUGUSTUS intron 594533 595200 0.84 - . Parent=g88.t1 ! chrI AUGUSTUS CDS 587707 587837 1 - 2 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 589053 589268 0.65 - 2 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 589450 589637 0.99 - 1 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 589690 589809 0.99 - 1 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 590536 590951 1 - 0 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 591002 591145 0.58 - 0 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 591888 592388 0.98 - 0 ID=g88.t1.cds;Parent=g88.t1 *************** *** 3173 **** ! chrI AUGUSTUS CDS 593496 593770 0.99 - 0 ID=g88.t1.cds;Parent=g88.t1 --- 3173 ---- ! chrI AUGUSTUS CDS 593496 593770 0.98 - 0 ID=g88.t1.cds;Parent=g88.t1 *************** *** 3176,3177 **** ! chrI AUGUSTUS CDS 594388 594532 0.99 - 2 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 595201 595243 0.77 - 0 ID=g88.t1.cds;Parent=g88.t1 --- 3176,3177 ---- ! chrI AUGUSTUS CDS 594388 594532 1 - 2 ID=g88.t1.cds;Parent=g88.t1 ! chrI AUGUSTUS CDS 595201 595243 0.84 - 0 ID=g88.t1.cds;Parent=g88.t1 *************** *** 3203,3204 **** ! chrI AUGUSTUS gene 599810 602650 0.31 + . ID=g89 ! chrI AUGUSTUS transcript 599810 602650 0.31 + . ID=g89.t1;Parent=g89 --- 3203,3204 ---- ! chrI AUGUSTUS gene 599810 602650 0.2 + . ID=g89 ! chrI AUGUSTUS transcript 599810 602650 0.2 + . ID=g89.t1;Parent=g89 *************** *** 3206 **** ! chrI AUGUSTUS five_prime_utr 599810 599989 0.34 + . Parent=g89.t1 --- 3206 ---- ! chrI AUGUSTUS five_prime_utr 599810 599989 0.27 + . Parent=g89.t1 *************** *** 3208 **** ! chrI AUGUSTUS intron 600036 600080 1 + . Parent=g89.t1 --- 3208 ---- ! chrI AUGUSTUS intron 600036 600080 0.99 + . Parent=g89.t1 *************** *** 3211,3213 **** ! chrI AUGUSTUS intron 600634 600997 0.99 + . Parent=g89.t1 ! chrI AUGUSTUS intron 601428 601469 0.87 + . Parent=g89.t1 ! chrI AUGUSTUS intron 601545 601603 0.99 + . Parent=g89.t1 --- 3211,3213 ---- ! chrI AUGUSTUS intron 600634 600997 1 + . Parent=g89.t1 ! chrI AUGUSTUS intron 601428 601469 0.8 + . Parent=g89.t1 ! chrI AUGUSTUS intron 601545 601603 0.98 + . Parent=g89.t1 *************** *** 3216,3217 **** ! chrI AUGUSTUS intron 602393 602477 0.99 + . Parent=g89.t1 ! chrI AUGUSTUS CDS 599990 600035 1 + 0 ID=g89.t1.cds;Parent=g89.t1 --- 3216,3217 ---- ! chrI AUGUSTUS intron 602393 602477 1 + . Parent=g89.t1 ! chrI AUGUSTUS CDS 599990 600035 0.99 + 0 ID=g89.t1.cds;Parent=g89.t1 *************** *** 3220,3222 **** ! chrI AUGUSTUS CDS 600516 600633 0.99 + 1 ID=g89.t1.cds;Parent=g89.t1 ! chrI AUGUSTUS CDS 600998 601427 0.88 + 0 ID=g89.t1.cds;Parent=g89.t1 ! chrI AUGUSTUS CDS 601470 601544 0.87 + 2 ID=g89.t1.cds;Parent=g89.t1 --- 3220,3222 ---- ! chrI AUGUSTUS CDS 600516 600633 1 + 1 ID=g89.t1.cds;Parent=g89.t1 ! chrI AUGUSTUS CDS 600998 601427 0.82 + 0 ID=g89.t1.cds;Parent=g89.t1 ! chrI AUGUSTUS CDS 601470 601544 0.8 + 2 ID=g89.t1.cds;Parent=g89.t1 *************** *** 3225 **** ! chrI AUGUSTUS CDS 602165 602392 0.99 + 1 ID=g89.t1.cds;Parent=g89.t1 --- 3225 ---- ! chrI AUGUSTUS CDS 602165 602392 1 + 1 ID=g89.t1.cds;Parent=g89.t1 *************** *** 3228 **** ! chrI AUGUSTUS three_prime_utr 602629 602650 1 + . Parent=g89.t1 --- 3228 ---- ! chrI AUGUSTUS three_prime_utr 602629 602650 0.97 + . Parent=g89.t1 *************** *** 3247,3248 **** ! chrI AUGUSTUS gene 604080 605800 0.36 + . ID=g90 ! chrI AUGUSTUS transcript 604080 605800 0.36 + . ID=g90.t1;Parent=g90 --- 3247,3248 ---- ! chrI AUGUSTUS gene 604080 605800 0.27 + . ID=g90 ! chrI AUGUSTUS transcript 604080 605800 0.27 + . ID=g90.t1;Parent=g90 *************** *** 3250 **** ! chrI AUGUSTUS five_prime_utr 604080 604239 0.8 + . Parent=g90.t1 --- 3250 ---- ! chrI AUGUSTUS five_prime_utr 604080 604239 0.81 + . Parent=g90.t1 *************** *** 3252,3254 **** ! chrI AUGUSTUS intron 604308 605393 0.71 + . Parent=g90.t1 ! chrI AUGUSTUS CDS 604240 604307 0.78 + 0 ID=g90.t1.cds;Parent=g90.t1 ! chrI AUGUSTUS CDS 605394 605592 0.72 + 1 ID=g90.t1.cds;Parent=g90.t1 --- 3252,3254 ---- ! chrI AUGUSTUS intron 604308 605393 0.78 + . Parent=g90.t1 ! chrI AUGUSTUS CDS 604240 604307 0.9 + 0 ID=g90.t1.cds;Parent=g90.t1 ! chrI AUGUSTUS CDS 605394 605592 0.79 + 1 ID=g90.t1.cds;Parent=g90.t1 *************** *** 3256 **** ! chrI AUGUSTUS three_prime_utr 605593 605800 0.37 + . Parent=g90.t1 --- 3256 ---- ! chrI AUGUSTUS three_prime_utr 605593 605800 0.34 + . Parent=g90.t1 *************** *** 3272,3273 **** ! chrI AUGUSTUS gene 606680 613299 0.57 + . ID=g91 ! chrI AUGUSTUS transcript 606680 613299 0.57 + . ID=g91.t1;Parent=g91 --- 3272,3273 ---- ! chrI AUGUSTUS gene 606680 613299 0.51 + . ID=g91 ! chrI AUGUSTUS transcript 606680 613299 0.51 + . ID=g91.t1;Parent=g91 *************** *** 3275 **** ! chrI AUGUSTUS five_prime_utr 606680 606741 0.66 + . Parent=g91.t1 --- 3275 ---- ! chrI AUGUSTUS five_prime_utr 606680 606741 0.63 + . Parent=g91.t1 *************** *** 3278,3280 **** ! chrI AUGUSTUS intron 607297 608188 0.99 + . Parent=g91.t1 ! chrI AUGUSTUS intron 608310 608861 0.98 + . Parent=g91.t1 ! chrI AUGUSTUS intron 609029 609889 0.99 + . Parent=g91.t1 --- 3278,3280 ---- ! chrI AUGUSTUS intron 607297 608188 0.98 + . Parent=g91.t1 ! chrI AUGUSTUS intron 608310 608861 0.99 + . Parent=g91.t1 ! chrI AUGUSTUS intron 609029 609889 0.98 + . Parent=g91.t1 *************** *** 3283,3289 **** ! chrI AUGUSTUS intron 611957 612003 0.99 + . Parent=g91.t1 ! chrI AUGUSTUS intron 612097 612788 0.99 + . Parent=g91.t1 ! chrI AUGUSTUS CDS 606742 606933 0.97 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 607213 607296 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 608189 608309 0.98 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 608862 609028 0.99 + 2 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 609890 610309 0.97 + 0 ID=g91.t1.cds;Parent=g91.t1 --- 3283,3289 ---- ! chrI AUGUSTUS intron 611957 612003 1 + . Parent=g91.t1 ! chrI AUGUSTUS intron 612097 612788 1 + . Parent=g91.t1 ! chrI AUGUSTUS CDS 606742 606933 0.96 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 607213 607296 0.98 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 608189 608309 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 608862 609028 0.97 + 2 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 609890 610309 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 *************** *** 3292,3293 **** ! chrI AUGUSTUS CDS 612004 612096 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 612789 613151 1 + 0 ID=g91.t1.cds;Parent=g91.t1 --- 3292,3293 ---- ! chrI AUGUSTUS CDS 612004 612096 1 + 0 ID=g91.t1.cds;Parent=g91.t1 ! chrI AUGUSTUS CDS 612789 613151 0.98 + 0 ID=g91.t1.cds;Parent=g91.t1 *************** *** 3295 **** ! chrI AUGUSTUS three_prime_utr 613152 613299 0.94 + . Parent=g91.t1 --- 3295 ---- ! chrI AUGUSTUS three_prime_utr 613152 613299 0.89 + . Parent=g91.t1 *************** *** 3316,3317 **** ! chrI AUGUSTUS gene 613760 617362 0.07 + . ID=g92 ! chrI AUGUSTUS transcript 613760 617362 0.07 + . ID=g92.t1;Parent=g92 --- 3316,3317 ---- ! chrI AUGUSTUS gene 613760 617362 0.06 + . ID=g92 ! chrI AUGUSTUS transcript 613760 617362 0.06 + . ID=g92.t1;Parent=g92 *************** *** 3319 **** ! chrI AUGUSTUS five_prime_utr 613760 614031 0.24 + . Parent=g92.t1 --- 3319 ---- ! chrI AUGUSTUS five_prime_utr 613760 614031 0.27 + . Parent=g92.t1 *************** *** 3321,3329 **** ! chrI AUGUSTUS intron 614491 614806 0.66 + . Parent=g92.t1 ! chrI AUGUSTUS intron 614821 615077 0.55 + . Parent=g92.t1 ! chrI AUGUSTUS intron 615156 615848 0.91 + . Parent=g92.t1 ! chrI AUGUSTUS intron 615939 617091 0.64 + . Parent=g92.t1 ! chrI AUGUSTUS CDS 614032 614490 0.82 + 0 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 614807 614820 0.45 + 0 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 615078 615155 0.65 + 1 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 615849 615938 0.92 + 1 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 617092 617110 0.64 + 1 ID=g92.t1.cds;Parent=g92.t1 --- 3321,3329 ---- ! chrI AUGUSTUS intron 614491 614806 0.64 + . Parent=g92.t1 ! chrI AUGUSTUS intron 614821 615077 0.52 + . Parent=g92.t1 ! chrI AUGUSTUS intron 615156 615848 0.88 + . Parent=g92.t1 ! chrI AUGUSTUS intron 615939 617091 0.59 + . Parent=g92.t1 ! chrI AUGUSTUS CDS 614032 614490 0.8 + 0 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 614807 614820 0.44 + 0 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 615078 615155 0.58 + 1 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 615849 615938 0.96 + 1 ID=g92.t1.cds;Parent=g92.t1 ! chrI AUGUSTUS CDS 617092 617110 0.6 + 1 ID=g92.t1.cds;Parent=g92.t1 *************** *** 3348,3349 **** ! chrI AUGUSTUS gene 617490 620428 0.88 + . ID=g93 ! chrI AUGUSTUS transcript 617490 620428 0.88 + . ID=g93.t1;Parent=g93 --- 3348,3349 ---- ! chrI AUGUSTUS gene 617490 620428 0.82 + . ID=g93 ! chrI AUGUSTUS transcript 617490 620428 0.82 + . ID=g93.t1;Parent=g93 *************** *** 3351 **** ! chrI AUGUSTUS five_prime_utr 617490 617560 1 + . Parent=g93.t1 --- 3351 ---- ! chrI AUGUSTUS five_prime_utr 617490 617560 0.98 + . Parent=g93.t1 *************** *** 3354 **** ! chrI AUGUSTUS intron 617847 617889 1 + . Parent=g93.t1 --- 3354 ---- ! chrI AUGUSTUS intron 617847 617889 0.99 + . Parent=g93.t1 *************** *** 3357 **** ! chrI AUGUSTUS intron 620193 620239 0.99 + . Parent=g93.t1 --- 3357 ---- ! chrI AUGUSTUS intron 620193 620239 1 + . Parent=g93.t1 *************** *** 3362 **** ! chrI AUGUSTUS CDS 620058 620192 0.99 + 0 ID=g93.t1.cds;Parent=g93.t1 --- 3362 ---- ! chrI AUGUSTUS CDS 620058 620192 1 + 0 ID=g93.t1.cds;Parent=g93.t1 *************** *** 3365 **** ! chrI AUGUSTUS three_prime_utr 620351 620428 0.91 + . Parent=g93.t1 --- 3365 ---- ! chrI AUGUSTUS three_prime_utr 620351 620428 0.85 + . Parent=g93.t1 *************** *** 3384,3385 **** ! chrI AUGUSTUS gene 620530 621860 0.23 + . ID=g94 ! chrI AUGUSTUS transcript 620530 621860 0.23 + . ID=g94.t1;Parent=g94 --- 3384,3385 ---- ! chrI AUGUSTUS gene 620530 621860 0.25 + . ID=g94 ! chrI AUGUSTUS transcript 620530 621860 0.25 + . ID=g94.t1;Parent=g94 *************** *** 3387 **** ! chrI AUGUSTUS five_prime_utr 620530 620659 0.48 + . Parent=g94.t1 --- 3387 ---- ! chrI AUGUSTUS five_prime_utr 620530 620659 0.56 + . Parent=g94.t1 *************** *** 3392 **** ! chrI AUGUSTUS CDS 620660 620824 0.99 + 0 ID=g94.t1.cds;Parent=g94.t1 --- 3392 ---- ! chrI AUGUSTUS CDS 620660 620824 1 + 0 ID=g94.t1.cds;Parent=g94.t1 *************** *** 3397 **** ! chrI AUGUSTUS three_prime_utr 621736 621860 0.46 + . Parent=g94.t1 --- 3397 ---- ! chrI AUGUSTUS three_prime_utr 621736 621860 0.47 + . Parent=g94.t1 *************** *** 3415,3416 **** ! chrI AUGUSTUS gene 621920 623160 0.16 + . ID=g95 ! chrI AUGUSTUS transcript 621920 623160 0.16 + . ID=g95.t1;Parent=g95 --- 3415,3416 ---- ! chrI AUGUSTUS gene 621920 623160 0.18 + . ID=g95 ! chrI AUGUSTUS transcript 621920 623160 0.18 + . ID=g95.t1;Parent=g95 *************** *** 3418 **** ! chrI AUGUSTUS five_prime_utr 621920 621957 0.26 + . Parent=g95.t1 --- 3418 ---- ! chrI AUGUSTUS five_prime_utr 621920 621957 0.3 + . Parent=g95.t1 *************** *** 3420,3423 **** ! chrI AUGUSTUS intron 622016 622318 0.56 + . Parent=g95.t1 ! chrI AUGUSTUS intron 622631 622893 1 + . Parent=g95.t1 ! chrI AUGUSTUS CDS 621958 622015 0.47 + 0 ID=g95.t1.cds;Parent=g95.t1 ! chrI AUGUSTUS CDS 622319 622630 0.56 + 2 ID=g95.t1.cds;Parent=g95.t1 --- 3420,3423 ---- ! chrI AUGUSTUS intron 622016 622318 0.52 + . Parent=g95.t1 ! chrI AUGUSTUS intron 622631 622893 0.99 + . Parent=g95.t1 ! chrI AUGUSTUS CDS 621958 622015 0.43 + 0 ID=g95.t1.cds;Parent=g95.t1 ! chrI AUGUSTUS CDS 622319 622630 0.52 + 2 ID=g95.t1.cds;Parent=g95.t1 *************** *** 3426 **** ! chrI AUGUSTUS three_prime_utr 623118 623160 0.67 + . Parent=g95.t1 --- 3426 ---- ! chrI AUGUSTUS three_prime_utr 623118 623160 0.72 + . Parent=g95.t1 *************** *** 3443,3444 **** ! chrI AUGUSTUS gene 623176 628369 0.42 - . ID=g96 ! chrI AUGUSTUS transcript 623176 628369 0.42 - . ID=g96.t1;Parent=g96 --- 3443,3444 ---- ! chrI AUGUSTUS gene 623176 628369 0.39 - . ID=g96 ! chrI AUGUSTUS transcript 623176 628369 0.39 - . ID=g96.t1;Parent=g96 *************** *** 3446 **** ! chrI AUGUSTUS three_prime_utr 623176 623360 0.8 - . Parent=g96.t1 --- 3446 ---- ! chrI AUGUSTUS three_prime_utr 623176 623360 0.78 - . Parent=g96.t1 *************** *** 3448,3449 **** ! chrI AUGUSTUS intron 623430 623644 0.76 - . Parent=g96.t1 ! chrI AUGUSTUS intron 623957 624015 0.99 - . Parent=g96.t1 --- 3448,3449 ---- ! chrI AUGUSTUS intron 623430 623644 0.8 - . Parent=g96.t1 ! chrI AUGUSTUS intron 623957 624015 1 - . Parent=g96.t1 *************** *** 3455,3456 **** ! chrI AUGUSTUS CDS 623645 623956 0.76 - 0 ID=g96.t1.cds;Parent=g96.t1 ! chrI AUGUSTUS CDS 624016 624544 0.99 - 1 ID=g96.t1.cds;Parent=g96.t1 --- 3455,3456 ---- ! chrI AUGUSTUS CDS 623645 623956 0.8 - 0 ID=g96.t1.cds;Parent=g96.t1 ! chrI AUGUSTUS CDS 624016 624544 1 - 1 ID=g96.t1.cds;Parent=g96.t1 *************** *** 3462 **** ! chrI AUGUSTUS five_prime_utr 628114 628369 0.68 - . Parent=g96.t1 --- 3462 ---- ! chrI AUGUSTUS five_prime_utr 628114 628369 0.65 - . Parent=g96.t1 *************** *** 3485,3486 **** ! chrI AUGUSTUS gene 628650 630504 0.1 + . ID=g97 ! chrI AUGUSTUS transcript 628650 630504 0.1 + . ID=g97.t1;Parent=g97 --- 3485,3486 ---- ! chrI AUGUSTUS gene 628650 630504 0.15 + . ID=g97 ! chrI AUGUSTUS transcript 628650 630504 0.15 + . ID=g97.t1;Parent=g97 *************** *** 3488 **** ! chrI AUGUSTUS five_prime_utr 628650 628681 0.16 + . Parent=g97.t1 --- 3488 ---- ! chrI AUGUSTUS five_prime_utr 628650 628681 0.25 + . Parent=g97.t1 *************** *** 3490,3495 **** ! chrI AUGUSTUS intron 628726 629746 0.46 + . Parent=g97.t1 ! chrI AUGUSTUS intron 629848 629948 0.77 + . Parent=g97.t1 ! chrI AUGUSTUS intron 630079 630126 0.85 + . Parent=g97.t1 ! chrI AUGUSTUS intron 630161 630204 0.85 + . Parent=g97.t1 ! chrI AUGUSTUS intron 630271 630325 1 + . Parent=g97.t1 ! chrI AUGUSTUS CDS 628682 628725 0.43 + 0 ID=g97.t1.cds;Parent=g97.t1 --- 3490,3495 ---- ! chrI AUGUSTUS intron 628726 629746 0.43 + . Parent=g97.t1 ! chrI AUGUSTUS intron 629848 629948 0.8 + . Parent=g97.t1 ! chrI AUGUSTUS intron 630079 630126 0.87 + . Parent=g97.t1 ! chrI AUGUSTUS intron 630161 630204 0.86 + . Parent=g97.t1 ! chrI AUGUSTUS intron 630271 630325 0.98 + . Parent=g97.t1 ! chrI AUGUSTUS CDS 628682 628725 0.41 + 0 ID=g97.t1.cds;Parent=g97.t1 *************** *** 3497,3499 **** ! chrI AUGUSTUS CDS 629949 630078 1 + 2 ID=g97.t1.cds;Parent=g97.t1 ! chrI AUGUSTUS CDS 630127 630160 0.85 + 1 ID=g97.t1.cds;Parent=g97.t1 ! chrI AUGUSTUS CDS 630205 630270 0.85 + 0 ID=g97.t1.cds;Parent=g97.t1 --- 3497,3499 ---- ! chrI AUGUSTUS CDS 629949 630078 0.98 + 2 ID=g97.t1.cds;Parent=g97.t1 ! chrI AUGUSTUS CDS 630127 630160 0.87 + 1 ID=g97.t1.cds;Parent=g97.t1 ! chrI AUGUSTUS CDS 630205 630270 0.86 + 0 ID=g97.t1.cds;Parent=g97.t1 *************** *** 3502 **** ! chrI AUGUSTUS three_prime_utr 630437 630504 0.78 + . Parent=g97.t1 --- 3502 ---- ! chrI AUGUSTUS three_prime_utr 630437 630504 0.84 + . Parent=g97.t1 *************** *** 3518,3519 **** ! chrI AUGUSTUS gene 630580 637456 0.04 + . ID=g98 ! chrI AUGUSTUS transcript 630580 637456 0.04 + . ID=g98.t1;Parent=g98 --- 3518,3519 ---- ! chrI AUGUSTUS gene 630580 637456 0.03 + . ID=g98 ! chrI AUGUSTUS transcript 630580 637456 0.03 + . ID=g98.t1;Parent=g98 *************** *** 3521 **** ! chrI AUGUSTUS five_prime_utr 630580 630623 0.86 + . Parent=g98.t1 --- 3521 ---- ! chrI AUGUSTUS five_prime_utr 630580 630623 0.78 + . Parent=g98.t1 *************** *** 3524,3527 **** ! chrI AUGUSTUS intron 631164 631208 1 + . Parent=g98.t1 ! chrI AUGUSTUS intron 631427 632040 0.29 + . Parent=g98.t1 ! chrI AUGUSTUS intron 632106 632428 0.17 + . Parent=g98.t1 ! chrI AUGUSTUS intron 632515 632969 0.78 + . Parent=g98.t1 --- 3524,3527 ---- ! chrI AUGUSTUS intron 631164 631208 0.99 + . Parent=g98.t1 ! chrI AUGUSTUS intron 631427 632040 0.23 + . Parent=g98.t1 ! chrI AUGUSTUS intron 632106 632428 0.16 + . Parent=g98.t1 ! chrI AUGUSTUS intron 632515 632969 0.83 + . Parent=g98.t1 *************** *** 3529 **** ! chrI AUGUSTUS intron 633968 634338 1 + . Parent=g98.t1 --- 3529 ---- ! chrI AUGUSTUS intron 633968 634338 0.99 + . Parent=g98.t1 *************** *** 3534,3537 **** ! chrI AUGUSTUS CDS 631039 631163 1 + 2 ID=g98.t1.cds;Parent=g98.t1 ! chrI AUGUSTUS CDS 631209 631426 0.78 + 0 ID=g98.t1.cds;Parent=g98.t1 ! chrI AUGUSTUS CDS 632041 632105 0.25 + 1 ID=g98.t1.cds;Parent=g98.t1 ! chrI AUGUSTUS CDS 632429 632514 0.37 + 2 ID=g98.t1.cds;Parent=g98.t1 --- 3534,3537 ---- ! chrI AUGUSTUS CDS 631039 631163 0.99 + 2 ID=g98.t1.cds;Parent=g98.t1 ! chrI AUGUSTUS CDS 631209 631426 0.77 + 0 ID=g98.t1.cds;Parent=g98.t1 ! chrI AUGUSTUS CDS 632041 632105 0.21 + 1 ID=g98.t1.cds;Parent=g98.t1 ! chrI AUGUSTUS CDS 632429 632514 0.43 + 2 ID=g98.t1.cds;Parent=g98.t1 *************** *** 3539 **** ! chrI AUGUSTUS CDS 633686 633967 1 + 1 ID=g98.t1.cds;Parent=g98.t1 --- 3539 ---- ! chrI AUGUSTUS CDS 633686 633967 0.99 + 1 ID=g98.t1.cds;Parent=g98.t1 *************** *** 3543 **** ! chrI AUGUSTUS CDS 637189 637417 0.27 + 1 ID=g98.t1.cds;Parent=g98.t1 --- 3543 ---- ! chrI AUGUSTUS CDS 637189 637417 0.33 + 1 ID=g98.t1.cds;Parent=g98.t1 *************** *** 3545 **** ! chrI AUGUSTUS three_prime_utr 637418 637456 0.21 + . Parent=g98.t1 --- 3545 ---- ! chrI AUGUSTUS three_prime_utr 637418 637456 0.25 + . Parent=g98.t1 *************** *** 3565,3566 **** ! chrI AUGUSTUS gene 642710 643779 0.54 + . ID=g99 ! chrI AUGUSTUS transcript 642710 643779 0.54 + . ID=g99.t1;Parent=g99 --- 3565,3566 ---- ! chrI AUGUSTUS gene 642710 643779 0.5 + . ID=g99 ! chrI AUGUSTUS transcript 642710 643779 0.5 + . ID=g99.t1;Parent=g99 *************** *** 3568 **** ! chrI AUGUSTUS five_prime_utr 642710 642740 0.57 + . Parent=g99.t1 --- 3568 ---- ! chrI AUGUSTUS five_prime_utr 642710 642740 0.54 + . Parent=g99.t1 *************** *** 3577 **** ! chrI AUGUSTUS CDS 643129 643314 0.99 + 0 ID=g99.t1.cds;Parent=g99.t1 --- 3577 ---- ! chrI AUGUSTUS CDS 643129 643314 0.98 + 0 ID=g99.t1.cds;Parent=g99.t1 *************** *** 3580 **** ! chrI AUGUSTUS three_prime_utr 643705 643779 0.96 + . Parent=g99.t1 --- 3580 ---- ! chrI AUGUSTUS three_prime_utr 643705 643779 0.93 + . Parent=g99.t1 *************** *** 3596,3597 **** ! chrI AUGUSTUS gene 645270 648079 0.62 - . ID=g100 ! chrI AUGUSTUS transcript 645270 648079 0.62 - . ID=g100.t1;Parent=g100 --- 3596,3597 ---- ! chrI AUGUSTUS gene 645270 648079 0.5 - . ID=g100 ! chrI AUGUSTUS transcript 645270 648079 0.5 - . ID=g100.t1;Parent=g100 *************** *** 3609 **** ! chrI AUGUSTUS five_prime_utr 648040 648079 0.64 - . Parent=g100.t1 --- 3609 ---- ! chrI AUGUSTUS five_prime_utr 648040 648079 0.52 - . Parent=g100.t1 *************** *** 3627,3628 **** ! chrI AUGUSTUS gene 650656 656119 0.06 - . ID=g101 ! chrI AUGUSTUS transcript 650656 656119 0.06 - . ID=g101.t1;Parent=g101 --- 3627,3628 ---- ! chrI AUGUSTUS gene 650656 656119 0.05 - . ID=g101 ! chrI AUGUSTUS transcript 650656 656119 0.05 - . ID=g101.t1;Parent=g101 *************** *** 3630 **** ! chrI AUGUSTUS three_prime_utr 650656 650737 0.66 - . Parent=g101.t1 --- 3630 ---- ! chrI AUGUSTUS three_prime_utr 650656 650737 0.5 - . Parent=g101.t1 *************** *** 3632,3639 **** ! chrI AUGUSTUS intron 650815 650860 0.83 - . Parent=g101.t1 ! chrI AUGUSTUS intron 650988 651186 0.63 - . Parent=g101.t1 ! chrI AUGUSTUS intron 651449 651491 0.96 - . Parent=g101.t1 ! chrI AUGUSTUS intron 651623 656054 0.08 - . Parent=g101.t1 ! chrI AUGUSTUS CDS 650738 650814 0.83 - 2 ID=g101.t1.cds;Parent=g101.t1 ! chrI AUGUSTUS CDS 650861 650987 0.64 - 0 ID=g101.t1.cds;Parent=g101.t1 ! chrI AUGUSTUS CDS 651187 651448 0.74 - 1 ID=g101.t1.cds;Parent=g101.t1 ! chrI AUGUSTUS CDS 651492 651622 0.14 - 0 ID=g101.t1.cds;Parent=g101.t1 --- 3632,3639 ---- ! chrI AUGUSTUS intron 650815 650860 0.77 - . Parent=g101.t1 ! chrI AUGUSTUS intron 650988 651186 0.62 - . Parent=g101.t1 ! chrI AUGUSTUS intron 651449 651491 0.91 - . Parent=g101.t1 ! chrI AUGUSTUS intron 651623 656054 0.11 - . Parent=g101.t1 ! chrI AUGUSTUS CDS 650738 650814 0.78 - 2 ID=g101.t1.cds;Parent=g101.t1 ! chrI AUGUSTUS CDS 650861 650987 0.63 - 0 ID=g101.t1.cds;Parent=g101.t1 ! chrI AUGUSTUS CDS 651187 651448 0.73 - 1 ID=g101.t1.cds;Parent=g101.t1 ! chrI AUGUSTUS CDS 651492 651622 0.12 - 0 ID=g101.t1.cds;Parent=g101.t1 *************** *** 3642 **** ! chrI AUGUSTUS five_prime_utr 656082 656119 0.13 - . Parent=g101.t1 --- 3642 ---- ! chrI AUGUSTUS five_prime_utr 656082 656119 0.12 - . Parent=g101.t1 *************** *** 3662 **** ! chrI AUGUSTUS five_prime_utr 663120 663176 0.31 + . Parent=g102.t1 --- 3662 ---- ! chrI AUGUSTUS five_prime_utr 663120 663176 0.26 + . Parent=g102.t1 *************** *** 3664,3668 **** ! chrI AUGUSTUS intron 663200 663717 0.23 + . Parent=g102.t1 ! chrI AUGUSTUS intron 663828 664930 0.22 + . Parent=g102.t1 ! chrI AUGUSTUS CDS 663177 663199 0.3 + 0 ID=g102.t1.cds;Parent=g102.t1 ! chrI AUGUSTUS CDS 663718 663827 0.23 + 1 ID=g102.t1.cds;Parent=g102.t1 ! chrI AUGUSTUS CDS 664931 665010 0.4 + 2 ID=g102.t1.cds;Parent=g102.t1 --- 3664,3668 ---- ! chrI AUGUSTUS intron 663200 663717 0.26 + . Parent=g102.t1 ! chrI AUGUSTUS intron 663828 664930 0.26 + . Parent=g102.t1 ! chrI AUGUSTUS CDS 663177 663199 0.28 + 0 ID=g102.t1.cds;Parent=g102.t1 ! chrI AUGUSTUS CDS 663718 663827 0.26 + 1 ID=g102.t1.cds;Parent=g102.t1 ! chrI AUGUSTUS CDS 664931 665010 0.35 + 2 ID=g102.t1.cds;Parent=g102.t1 *************** *** 3670 **** ! chrI AUGUSTUS three_prime_utr 665011 665263 0.8 + . Parent=g102.t1 --- 3670 ---- ! chrI AUGUSTUS three_prime_utr 665011 665263 0.72 + . Parent=g102.t1 *************** *** 3686,3687 **** ! chrI AUGUSTUS gene 668040 672438 0.07 + . ID=g103 ! chrI AUGUSTUS transcript 668040 672438 0.07 + . ID=g103.t1;Parent=g103 --- 3686,3687 ---- ! chrI AUGUSTUS gene 668040 672438 0.15 + . ID=g103 ! chrI AUGUSTUS transcript 668040 672438 0.15 + . ID=g103.t1;Parent=g103 *************** *** 3689 **** ! chrI AUGUSTUS five_prime_utr 668040 668168 0.4 + . Parent=g103.t1 --- 3689 ---- ! chrI AUGUSTUS five_prime_utr 668040 668168 0.47 + . Parent=g103.t1 *************** *** 3691 **** ! chrI AUGUSTUS intron 668261 668408 0.99 + . Parent=g103.t1 --- 3691 ---- ! chrI AUGUSTUS intron 668261 668408 0.98 + . Parent=g103.t1 *************** *** 3693 **** ! chrI AUGUSTUS intron 669213 669631 0.99 + . Parent=g103.t1 --- 3693 ---- ! chrI AUGUSTUS intron 669213 669631 0.97 + . Parent=g103.t1 *************** *** 3698 **** ! chrI AUGUSTUS CDS 668169 668260 0.96 + 0 ID=g103.t1.cds;Parent=g103.t1 --- 3698 ---- ! chrI AUGUSTUS CDS 668169 668260 0.97 + 0 ID=g103.t1.cds;Parent=g103.t1 *************** *** 3701 **** ! chrI AUGUSTUS CDS 669632 669748 0.77 + 0 ID=g103.t1.cds;Parent=g103.t1 --- 3701 ---- ! chrI AUGUSTUS CDS 669632 669748 0.76 + 0 ID=g103.t1.cds;Parent=g103.t1 *************** *** 3707 **** ! chrI AUGUSTUS three_prime_utr 672013 672438 0.43 + . Parent=g103.t1 --- 3707 ---- ! chrI AUGUSTUS three_prime_utr 672013 672438 0.41 + . Parent=g103.t1 *************** *** 3726,3727 **** ! chrI AUGUSTUS gene 672943 682759 0.1 - . ID=g104 ! chrI AUGUSTUS transcript 672943 682759 0.1 - . ID=g104.t1;Parent=g104 --- 3726,3727 ---- ! chrI AUGUSTUS gene 672943 682759 0.15 - . ID=g104 ! chrI AUGUSTUS transcript 672943 682759 0.15 - . ID=g104.t1;Parent=g104 *************** *** 3729 **** ! chrI AUGUSTUS three_prime_utr 672943 673245 0.75 - . Parent=g104.t1 --- 3729 ---- ! chrI AUGUSTUS three_prime_utr 672943 673245 0.73 - . Parent=g104.t1 *************** *** 3732 **** ! chrI AUGUSTUS intron 674466 674643 0.95 - . Parent=g104.t1 --- 3732 ---- ! chrI AUGUSTUS intron 674466 674643 0.99 - . Parent=g104.t1 *************** *** 3738,3740 **** ! chrI AUGUSTUS intron 679330 679801 0.87 - . Parent=g104.t1 ! chrI AUGUSTUS intron 679892 680555 0.86 - . Parent=g104.t1 ! chrI AUGUSTUS intron 680667 682534 0.96 - . Parent=g104.t1 --- 3738,3740 ---- ! chrI AUGUSTUS intron 679330 679801 0.83 - . Parent=g104.t1 ! chrI AUGUSTUS intron 679892 680555 0.91 - . Parent=g104.t1 ! chrI AUGUSTUS intron 680667 682534 0.99 - . Parent=g104.t1 *************** *** 3743 **** ! chrI AUGUSTUS CDS 674644 674887 0.95 - 0 ID=g104.t1.cds;Parent=g104.t1 --- 3743 ---- ! chrI AUGUSTUS CDS 674644 674887 0.99 - 0 ID=g104.t1.cds;Parent=g104.t1 *************** *** 3749,3751 **** ! chrI AUGUSTUS CDS 679802 679891 0.94 - 0 ID=g104.t1.cds;Parent=g104.t1 ! chrI AUGUSTUS CDS 680556 680666 0.9 - 0 ID=g104.t1.cds;Parent=g104.t1 ! chrI AUGUSTUS CDS 682535 682729 0.81 - 0 ID=g104.t1.cds;Parent=g104.t1 --- 3749,3751 ---- ! chrI AUGUSTUS CDS 679802 679891 0.97 - 0 ID=g104.t1.cds;Parent=g104.t1 ! chrI AUGUSTUS CDS 680556 680666 0.91 - 0 ID=g104.t1.cds;Parent=g104.t1 ! chrI AUGUSTUS CDS 682535 682729 0.92 - 0 ID=g104.t1.cds;Parent=g104.t1 *************** *** 3753 **** ! chrI AUGUSTUS five_prime_utr 682730 682759 0.24 - . Parent=g104.t1 --- 3753 ---- ! chrI AUGUSTUS five_prime_utr 682730 682759 0.33 - . Parent=g104.t1 *************** *** 3776,3777 **** ! chrI AUGUSTUS gene 686642 689467 0.37 - . ID=g105 ! chrI AUGUSTUS transcript 686642 689467 0.37 - . ID=g105.t1;Parent=g105 --- 3776,3777 ---- ! chrI AUGUSTUS gene 686642 689467 0.29 - . ID=g105 ! chrI AUGUSTUS transcript 686642 689467 0.29 - . ID=g105.t1;Parent=g105 *************** *** 3779 **** ! chrI AUGUSTUS three_prime_utr 686642 686698 1 - . Parent=g105.t1 --- 3779 ---- ! chrI AUGUSTUS three_prime_utr 686642 686698 0.95 - . Parent=g105.t1 *************** *** 3782,3783 **** ! chrI AUGUSTUS intron 687895 687950 0.64 - . Parent=g105.t1 ! chrI AUGUSTUS intron 687975 689086 0.64 - . Parent=g105.t1 --- 3782,3783 ---- ! chrI AUGUSTUS intron 687895 687950 0.67 - . Parent=g105.t1 ! chrI AUGUSTUS intron 687975 689086 0.67 - . Parent=g105.t1 *************** *** 3787 **** ! chrI AUGUSTUS CDS 687951 687974 0.64 - 2 ID=g105.t1.cds;Parent=g105.t1 --- 3787 ---- ! chrI AUGUSTUS CDS 687951 687974 0.67 - 2 ID=g105.t1.cds;Parent=g105.t1 *************** *** 3791 **** ! chrI AUGUSTUS five_prime_utr 689417 689467 0.54 - . Parent=g105.t1 --- 3791 ---- ! chrI AUGUSTUS five_prime_utr 689417 689467 0.45 - . Parent=g105.t1 *************** *** 3809,3810 **** ! chrI AUGUSTUS gene 692078 692518 0.63 + . ID=g106 ! chrI AUGUSTUS transcript 692078 692518 0.63 + . ID=g106.t1;Parent=g106 --- 3809,3810 ---- ! chrI AUGUSTUS gene 692078 692518 0.68 + . ID=g106 ! chrI AUGUSTUS transcript 692078 692518 0.68 + . ID=g106.t1;Parent=g106 *************** *** 3812 **** ! chrI AUGUSTUS five_prime_utr 692078 692109 0.96 + . Parent=g106.t1 --- 3812 ---- ! chrI AUGUSTUS five_prime_utr 692078 692109 0.98 + . Parent=g106.t1 *************** *** 3816 **** ! chrI AUGUSTUS three_prime_utr 692401 692518 0.66 + . Parent=g106.t1 --- 3816 ---- ! chrI AUGUSTUS three_prime_utr 692401 692518 0.69 + . Parent=g106.t1 *************** *** 3831,3832 **** ! chrI AUGUSTUS gene 692578 694218 0.11 + . ID=g107 ! chrI AUGUSTUS transcript 692578 694218 0.11 + . ID=g107.t1;Parent=g107 --- 3831,3832 ---- ! chrI AUGUSTUS gene 692578 694218 0.16 + . ID=g107 ! chrI AUGUSTUS transcript 692578 694218 0.16 + . ID=g107.t1;Parent=g107 *************** *** 3834 **** ! chrI AUGUSTUS five_prime_utr 692578 692757 0.29 + . Parent=g107.t1 --- 3834 ---- ! chrI AUGUSTUS five_prime_utr 692578 692757 0.37 + . Parent=g107.t1 *************** *** 3838 **** ! chrI AUGUSTUS intron 693130 693175 0.67 + . Parent=g107.t1 --- 3838 ---- ! chrI AUGUSTUS intron 693130 693175 0.69 + . Parent=g107.t1 *************** *** 3840,3841 **** ! chrI AUGUSTUS intron 693643 693727 0.86 + . Parent=g107.t1 ! chrI AUGUSTUS CDS 692758 692825 0.99 + 0 ID=g107.t1.cds;Parent=g107.t1 --- 3840,3841 ---- ! chrI AUGUSTUS intron 693643 693727 0.79 + . Parent=g107.t1 ! chrI AUGUSTUS CDS 692758 692825 0.98 + 0 ID=g107.t1.cds;Parent=g107.t1 *************** *** 3843,3845 **** ! chrI AUGUSTUS CDS 693043 693129 0.67 + 0 ID=g107.t1.cds;Parent=g107.t1 ! chrI AUGUSTUS CDS 693176 693292 0.67 + 0 ID=g107.t1.cds;Parent=g107.t1 ! chrI AUGUSTUS CDS 693353 693642 0.87 + 0 ID=g107.t1.cds;Parent=g107.t1 --- 3843,3845 ---- ! chrI AUGUSTUS CDS 693043 693129 0.69 + 0 ID=g107.t1.cds;Parent=g107.t1 ! chrI AUGUSTUS CDS 693176 693292 0.69 + 0 ID=g107.t1.cds;Parent=g107.t1 ! chrI AUGUSTUS CDS 693353 693642 0.8 + 0 ID=g107.t1.cds;Parent=g107.t1 *************** *** 3848 **** ! chrI AUGUSTUS three_prime_utr 694086 694218 0.8 + . Parent=g107.t1 --- 3848 ---- ! chrI AUGUSTUS three_prime_utr 694086 694218 0.68 + . Parent=g107.t1 *************** *** 3866,3867 **** ! chrI AUGUSTUS gene 697278 699999 0.52 + . ID=g108 ! chrI AUGUSTUS transcript 697278 699999 0.52 + . ID=g108.t1;Parent=g108 --- 3866,3867 ---- ! chrI AUGUSTUS gene 697278 699999 0.54 + . ID=g108 ! chrI AUGUSTUS transcript 697278 699999 0.54 + . ID=g108.t1;Parent=g108 *************** *** 3869 **** ! chrI AUGUSTUS five_prime_utr 697278 697440 0.83 + . Parent=g108.t1 --- 3869 ---- ! chrI AUGUSTUS five_prime_utr 697278 697440 0.72 + . Parent=g108.t1 *************** *** 3872 **** ! chrI AUGUSTUS intron 697682 698041 0.84 + . Parent=g108.t1 --- 3872 ---- ! chrI AUGUSTUS intron 697682 698041 0.89 + . Parent=g108.t1 *************** *** 3874,3876 **** ! chrI AUGUSTUS intron 698929 698976 1 + . Parent=g108.t1 ! chrI AUGUSTUS intron 699089 699551 1 + . Parent=g108.t1 ! chrI AUGUSTUS intron 699760 699812 0.99 + . Parent=g108.t1 --- 3874,3876 ---- ! chrI AUGUSTUS intron 698929 698976 0.98 + . Parent=g108.t1 ! chrI AUGUSTUS intron 699089 699551 0.99 + . Parent=g108.t1 ! chrI AUGUSTUS intron 699760 699812 1 + . Parent=g108.t1 *************** *** 3878,3881 **** ! chrI AUGUSTUS CDS 697626 697681 0.98 + 0 ID=g108.t1.cds;Parent=g108.t1 ! chrI AUGUSTUS CDS 698042 698330 0.85 + 1 ID=g108.t1.cds;Parent=g108.t1 ! chrI AUGUSTUS CDS 698835 698928 1 + 0 ID=g108.t1.cds;Parent=g108.t1 ! chrI AUGUSTUS CDS 698977 699088 1 + 2 ID=g108.t1.cds;Parent=g108.t1 --- 3878,3881 ---- ! chrI AUGUSTUS CDS 697626 697681 1 + 0 ID=g108.t1.cds;Parent=g108.t1 ! chrI AUGUSTUS CDS 698042 698330 0.89 + 1 ID=g108.t1.cds;Parent=g108.t1 ! chrI AUGUSTUS CDS 698835 698928 0.98 + 0 ID=g108.t1.cds;Parent=g108.t1 ! chrI AUGUSTUS CDS 698977 699088 0.98 + 2 ID=g108.t1.cds;Parent=g108.t1 *************** *** 3883 **** ! chrI AUGUSTUS CDS 699813 699956 0.93 + 0 ID=g108.t1.cds;Parent=g108.t1 --- 3883 ---- ! chrI AUGUSTUS CDS 699813 699956 0.92 + 0 ID=g108.t1.cds;Parent=g108.t1 *************** *** 3885 **** ! chrI AUGUSTUS three_prime_utr 699957 699999 0.74 + . Parent=g108.t1 --- 3885 ---- ! chrI AUGUSTUS three_prime_utr 699957 699999 0.83 + . Parent=g108.t1 *************** *** 3903,3904 **** ! chrI AUGUSTUS gene 700408 702212 0.21 + . ID=g109 ! chrI AUGUSTUS transcript 700408 702212 0.21 + . ID=g109.t1;Parent=g109 --- 3903,3904 ---- ! chrI AUGUSTUS gene 700408 702212 0.24 + . ID=g109 ! chrI AUGUSTUS transcript 700408 702212 0.24 + . ID=g109.t1;Parent=g109 *************** *** 3906 **** ! chrI AUGUSTUS five_prime_utr 700408 700504 0.52 + . Parent=g109.t1 --- 3906 ---- ! chrI AUGUSTUS five_prime_utr 700408 700504 0.53 + . Parent=g109.t1 *************** *** 3908,3909 **** ! chrI AUGUSTUS intron 700604 700884 0.94 + . Parent=g109.t1 ! chrI AUGUSTUS intron 701683 701730 0.73 + . Parent=g109.t1 --- 3908,3909 ---- ! chrI AUGUSTUS intron 700604 700884 0.93 + . Parent=g109.t1 ! chrI AUGUSTUS intron 701683 701730 0.81 + . Parent=g109.t1 *************** *** 3911,3913 **** ! chrI AUGUSTUS CDS 700505 700603 0.83 + 0 ID=g109.t1.cds;Parent=g109.t1 ! chrI AUGUSTUS CDS 700885 701682 0.69 + 0 ID=g109.t1.cds;Parent=g109.t1 ! chrI AUGUSTUS CDS 701731 701943 0.73 + 0 ID=g109.t1.cds;Parent=g109.t1 --- 3911,3913 ---- ! chrI AUGUSTUS CDS 700505 700603 0.84 + 0 ID=g109.t1.cds;Parent=g109.t1 ! chrI AUGUSTUS CDS 700885 701682 0.77 + 0 ID=g109.t1.cds;Parent=g109.t1 ! chrI AUGUSTUS CDS 701731 701943 0.81 + 0 ID=g109.t1.cds;Parent=g109.t1 *************** *** 3916 **** ! chrI AUGUSTUS three_prime_utr 702084 702212 0.54 + . Parent=g109.t1 --- 3916 ---- ! chrI AUGUSTUS three_prime_utr 702084 702212 0.59 + . Parent=g109.t1 *************** *** 3934,3935 **** ! chrI AUGUSTUS gene 707228 717547 0.26 + . ID=g110 ! chrI AUGUSTUS transcript 707228 717547 0.26 + . ID=g110.t1;Parent=g110 --- 3934,3935 ---- ! chrI AUGUSTUS gene 707228 717547 0.18 + . ID=g110 ! chrI AUGUSTUS transcript 707228 717547 0.18 + . ID=g110.t1;Parent=g110 *************** *** 3939,3942 **** ! chrI AUGUSTUS intron 707405 708102 0.46 + . Parent=g110.t1 ! chrI AUGUSTUS intron 708208 709920 1 + . Parent=g110.t1 ! chrI AUGUSTUS intron 710068 711121 0.93 + . Parent=g110.t1 ! chrI AUGUSTUS intron 711407 712439 0.82 + . Parent=g110.t1 --- 3939,3942 ---- ! chrI AUGUSTUS intron 707405 708102 0.44 + . Parent=g110.t1 ! chrI AUGUSTUS intron 708208 709920 0.99 + . Parent=g110.t1 ! chrI AUGUSTUS intron 710068 711121 0.91 + . Parent=g110.t1 ! chrI AUGUSTUS intron 711407 712439 0.7 + . Parent=g110.t1 *************** *** 3944 **** ! chrI AUGUSTUS intron 714074 714120 1 + . Parent=g110.t1 --- 3944 ---- ! chrI AUGUSTUS intron 714074 714120 0.99 + . Parent=g110.t1 *************** *** 3946,3952 **** ! chrI AUGUSTUS intron 715056 717230 0.95 + . Parent=g110.t1 ! chrI AUGUSTUS CDS 707348 707404 0.46 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 708103 708207 0.97 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 709921 710067 0.99 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 711122 711406 0.82 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 712440 712549 0.82 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 713852 714073 1 + 1 ID=g110.t1.cds;Parent=g110.t1 --- 3946,3952 ---- ! chrI AUGUSTUS intron 715056 717230 0.94 + . Parent=g110.t1 ! chrI AUGUSTUS CDS 707348 707404 0.44 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 708103 708207 0.95 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 709921 710067 0.98 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 711122 711406 0.7 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 712440 712549 0.7 + 0 ID=g110.t1.cds;Parent=g110.t1 ! chrI AUGUSTUS CDS 713852 714073 0.99 + 1 ID=g110.t1.cds;Parent=g110.t1 *************** *** 3954 **** ! chrI AUGUSTUS CDS 714729 715055 0.92 + 0 ID=g110.t1.cds;Parent=g110.t1 --- 3954 ---- ! chrI AUGUSTUS CDS 714729 715055 0.96 + 0 ID=g110.t1.cds;Parent=g110.t1 *************** *** 3957 **** ! chrI AUGUSTUS three_prime_utr 717357 717547 0.93 + . Parent=g110.t1 --- 3957 ---- ! chrI AUGUSTUS three_prime_utr 717357 717547 0.88 + . Parent=g110.t1 *************** *** 3977,3978 **** ! chrI AUGUSTUS gene 718026 726827 0.12 - . ID=g111 ! chrI AUGUSTUS transcript 718026 726827 0.12 - . ID=g111.t1;Parent=g111 --- 3977,3978 ---- ! chrI AUGUSTUS gene 718026 726827 0.13 - . ID=g111 ! chrI AUGUSTUS transcript 718026 726827 0.13 - . ID=g111.t1;Parent=g111 *************** *** 3980 **** ! chrI AUGUSTUS three_prime_utr 718026 718128 0.27 - . Parent=g111.t1 --- 3980 ---- ! chrI AUGUSTUS three_prime_utr 718026 718128 0.31 - . Parent=g111.t1 *************** *** 3982,3983 **** ! chrI AUGUSTUS intron 718331 719104 1 - . Parent=g111.t1 ! chrI AUGUSTUS intron 719269 720670 0.93 - . Parent=g111.t1 --- 3982,3983 ---- ! chrI AUGUSTUS intron 718331 719104 0.99 - . Parent=g111.t1 ! chrI AUGUSTUS intron 719269 720670 0.96 - . Parent=g111.t1 *************** *** 3987 **** ! chrI AUGUSTUS intron 725403 725758 0.99 - . Parent=g111.t1 --- 3987 ---- ! chrI AUGUSTUS intron 725403 725758 1 - . Parent=g111.t1 *************** *** 3989 **** ! chrI AUGUSTUS intron 726072 726139 0.86 - . Parent=g111.t1 --- 3989 ---- ! chrI AUGUSTUS intron 726072 726139 0.9 - . Parent=g111.t1 *************** *** 3993 **** ! chrI AUGUSTUS CDS 719105 719268 0.94 - 0 ID=g111.t1.cds;Parent=g111.t1 --- 3993 ---- ! chrI AUGUSTUS CDS 719105 719268 0.95 - 0 ID=g111.t1.cds;Parent=g111.t1 *************** *** 3999,4000 **** ! chrI AUGUSTUS CDS 725987 726071 0.88 - 2 ID=g111.t1.cds;Parent=g111.t1 ! chrI AUGUSTUS CDS 726140 726267 0.98 - 1 ID=g111.t1.cds;Parent=g111.t1 --- 3999,4000 ---- ! chrI AUGUSTUS CDS 725987 726071 0.9 - 2 ID=g111.t1.cds;Parent=g111.t1 ! chrI AUGUSTUS CDS 726140 726267 1 - 1 ID=g111.t1.cds;Parent=g111.t1 *************** *** 4004 **** ! chrI AUGUSTUS five_prime_utr 726653 726827 0.35 - . Parent=g111.t1 --- 4004 ---- ! chrI AUGUSTUS five_prime_utr 726653 726827 0.39 - . Parent=g111.t1 *************** *** 4026,4027 **** ! chrI AUGUSTUS gene 726978 727385 0.38 + . ID=g112 ! chrI AUGUSTUS transcript 726978 727385 0.38 + . ID=g112.t1;Parent=g112 --- 4026,4027 ---- ! chrI AUGUSTUS gene 726978 727385 0.3 + . ID=g112 ! chrI AUGUSTUS transcript 726978 727385 0.3 + . ID=g112.t1;Parent=g112 *************** *** 4029 **** ! chrI AUGUSTUS five_prime_utr 726978 727018 0.58 + . Parent=g112.t1 --- 4029 ---- ! chrI AUGUSTUS five_prime_utr 726978 727018 0.44 + . Parent=g112.t1 *************** *** 4035 **** ! chrI AUGUSTUS three_prime_utr 727306 727385 0.65 + . Parent=g112.t1 --- 4035 ---- ! chrI AUGUSTUS three_prime_utr 727306 727385 0.62 + . Parent=g112.t1 *************** *** 4049,4050 **** ! chrI AUGUSTUS gene 729958 731454 0.66 + . ID=g113 ! chrI AUGUSTUS transcript 729958 731454 0.66 + . ID=g113.t1;Parent=g113 --- 4049,4050 ---- ! chrI AUGUSTUS gene 729958 731454 0.64 + . ID=g113 ! chrI AUGUSTUS transcript 729958 731454 0.64 + . ID=g113.t1;Parent=g113 *************** *** 4052 **** ! chrI AUGUSTUS five_prime_utr 729958 730010 0.69 + . Parent=g113.t1 --- 4052 ---- ! chrI AUGUSTUS five_prime_utr 729958 730010 0.67 + . Parent=g113.t1 *************** *** 4074,4075 **** ! chrI AUGUSTUS gene 731538 735342 0.31 + . ID=g114 ! chrI AUGUSTUS transcript 731538 735342 0.31 + . ID=g114.t1;Parent=g114 --- 4074,4075 ---- ! chrI AUGUSTUS gene 731538 735342 0.27 + . ID=g114 ! chrI AUGUSTUS transcript 731538 735342 0.27 + . ID=g114.t1;Parent=g114 *************** *** 4077 **** ! chrI AUGUSTUS five_prime_utr 731538 731564 0.53 + . Parent=g114.t1 --- 4077 ---- ! chrI AUGUSTUS five_prime_utr 731538 731564 0.58 + . Parent=g114.t1 *************** *** 4085 **** ! chrI AUGUSTUS three_prime_utr 735315 735342 0.5 + . Parent=g114.t1 --- 4085 ---- ! chrI AUGUSTUS three_prime_utr 735315 735342 0.48 + . Parent=g114.t1 *************** *** 4106 **** ! chrI AUGUSTUS three_prime_utr 735347 735546 0.49 - . Parent=g115.t1 --- 4106 ---- ! chrI AUGUSTUS three_prime_utr 735347 735546 0.46 - . Parent=g115.t1 *************** *** 4110,4111 **** ! chrI AUGUSTUS intron 738265 738491 1 - . Parent=g115.t1 ! chrI AUGUSTUS intron 738644 739590 0.61 - . Parent=g115.t1 --- 4110,4111 ---- ! chrI AUGUSTUS intron 738265 738491 0.99 - . Parent=g115.t1 ! chrI AUGUSTUS intron 738644 739590 0.72 - . Parent=g115.t1 *************** *** 4113,4114 **** ! chrI AUGUSTUS CDS 737442 737735 0.99 - 0 ID=g115.t1.cds;Parent=g115.t1 ! chrI AUGUSTUS CDS 738019 738264 1 - 0 ID=g115.t1.cds;Parent=g115.t1 --- 4113,4114 ---- ! chrI AUGUSTUS CDS 737442 737735 1 - 0 ID=g115.t1.cds;Parent=g115.t1 ! chrI AUGUSTUS CDS 738019 738264 0.99 - 0 ID=g115.t1.cds;Parent=g115.t1 *************** *** 4116 **** ! chrI AUGUSTUS CDS 739591 739612 0.32 - 0 ID=g115.t1.cds;Parent=g115.t1 --- 4116 ---- ! chrI AUGUSTUS CDS 739591 739612 0.4 - 0 ID=g115.t1.cds;Parent=g115.t1 *************** *** 4118 **** ! chrI AUGUSTUS five_prime_utr 739613 739647 0.14 - . Parent=g115.t1 --- 4118 ---- ! chrI AUGUSTUS five_prime_utr 739613 739647 0.22 - . Parent=g115.t1 *************** *** 4139,4140 **** ! chrI AUGUSTUS gene 741279 742867 0.38 - . ID=g116 ! chrI AUGUSTUS transcript 741279 742867 0.38 - . ID=g116.t1;Parent=g116 --- 4139,4140 ---- ! chrI AUGUSTUS gene 741279 742867 0.41 - . ID=g116 ! chrI AUGUSTUS transcript 741279 742867 0.41 - . ID=g116.t1;Parent=g116 *************** *** 4142 **** ! chrI AUGUSTUS three_prime_utr 741279 741396 0.54 - . Parent=g116.t1 --- 4142 ---- ! chrI AUGUSTUS three_prime_utr 741279 741396 0.66 - . Parent=g116.t1 *************** *** 4144,4148 **** ! chrI AUGUSTUS intron 741512 742397 0.99 - . Parent=g116.t1 ! chrI AUGUSTUS intron 742510 742557 0.65 - . Parent=g116.t1 ! chrI AUGUSTUS CDS 741397 741511 0.68 - 1 ID=g116.t1.cds;Parent=g116.t1 ! chrI AUGUSTUS CDS 742398 742509 0.67 - 2 ID=g116.t1.cds;Parent=g116.t1 ! chrI AUGUSTUS CDS 742558 742738 0.65 - 0 ID=g116.t1.cds;Parent=g116.t1 --- 4144,4148 ---- ! chrI AUGUSTUS intron 741512 742397 1 - . Parent=g116.t1 ! chrI AUGUSTUS intron 742510 742557 0.72 - . Parent=g116.t1 ! chrI AUGUSTUS CDS 741397 741511 0.74 - 1 ID=g116.t1.cds;Parent=g116.t1 ! chrI AUGUSTUS CDS 742398 742509 0.71 - 2 ID=g116.t1.cds;Parent=g116.t1 ! chrI AUGUSTUS CDS 742558 742738 0.71 - 0 ID=g116.t1.cds;Parent=g116.t1 *************** *** 4150 **** ! chrI AUGUSTUS five_prime_utr 742739 742867 0.55 - . Parent=g116.t1 --- 4150 ---- ! chrI AUGUSTUS five_prime_utr 742739 742867 0.49 - . Parent=g116.t1 *************** *** 4169 **** ! chrI AUGUSTUS three_prime_utr 755249 755818 0.73 - . Parent=g117.t1 --- 4169 ---- ! chrI AUGUSTUS three_prime_utr 755249 755818 0.67 - . Parent=g117.t1 *************** *** 4174,4175 **** ! chrI AUGUSTUS intron 757498 757545 0.99 - . Parent=g117.t1 ! chrI AUGUSTUS intron 757838 757893 1 - . Parent=g117.t1 --- 4174,4175 ---- ! chrI AUGUSTUS intron 757498 757545 1 - . Parent=g117.t1 ! chrI AUGUSTUS intron 757838 757893 0.99 - . Parent=g117.t1 *************** *** 4177 **** ! chrI AUGUSTUS CDS 756168 756611 1 - 0 ID=g117.t1.cds;Parent=g117.t1 --- 4177 ---- ! chrI AUGUSTUS CDS 756168 756611 0.99 - 0 ID=g117.t1.cds;Parent=g117.t1 *************** *** 4179 **** ! chrI AUGUSTUS CDS 757385 757497 0.99 - 2 ID=g117.t1.cds;Parent=g117.t1 --- 4179 ---- ! chrI AUGUSTUS CDS 757385 757497 1 - 2 ID=g117.t1.cds;Parent=g117.t1 *************** *** 4204,4205 **** ! chrI AUGUSTUS gene 759027 760467 0.33 - . ID=g118 ! chrI AUGUSTUS transcript 759027 760467 0.33 - . ID=g118.t1;Parent=g118 --- 4204,4205 ---- ! chrI AUGUSTUS gene 759027 760467 0.35 - . ID=g118 ! chrI AUGUSTUS transcript 759027 760467 0.35 - . ID=g118.t1;Parent=g118 *************** *** 4207 **** ! chrI AUGUSTUS three_prime_utr 759027 759074 0.86 - . Parent=g118.t1 --- 4207 ---- ! chrI AUGUSTUS three_prime_utr 759027 759074 0.74 - . Parent=g118.t1 *************** *** 4209 **** ! chrI AUGUSTUS intron 759246 759313 1 - . Parent=g118.t1 --- 4209 ---- ! chrI AUGUSTUS intron 759246 759313 0.99 - . Parent=g118.t1 *************** *** 4211 **** ! chrI AUGUSTUS intron 759972 760326 0.85 - . Parent=g118.t1 --- 4211 ---- ! chrI AUGUSTUS intron 759972 760326 0.88 - . Parent=g118.t1 *************** *** 4213 **** ! chrI AUGUSTUS CDS 759314 759683 1 - 1 ID=g118.t1.cds;Parent=g118.t1 --- 4213 ---- ! chrI AUGUSTUS CDS 759314 759683 0.99 - 1 ID=g118.t1.cds;Parent=g118.t1 *************** *** 4217 **** ! chrI AUGUSTUS five_prime_utr 760399 760467 0.38 - . Parent=g118.t1 --- 4217 ---- ! chrI AUGUSTUS five_prime_utr 760399 760467 0.47 - . Parent=g118.t1 *************** *** 4235,4236 **** ! chrI AUGUSTUS gene 761007 776097 0.15 - . ID=g119 ! chrI AUGUSTUS transcript 761007 776097 0.15 - . ID=g119.t1;Parent=g119 --- 4235,4236 ---- ! chrI AUGUSTUS gene 761007 776097 0.17 - . ID=g119 ! chrI AUGUSTUS transcript 761007 776097 0.17 - . ID=g119.t1;Parent=g119 *************** *** 4238 **** ! chrI AUGUSTUS three_prime_utr 761007 761318 0.59 - . Parent=g119.t1 --- 4238 ---- ! chrI AUGUSTUS three_prime_utr 761007 761318 0.53 - . Parent=g119.t1 *************** *** 4240 **** ! chrI AUGUSTUS intron 761515 762147 0.98 - . Parent=g119.t1 --- 4240 ---- ! chrI AUGUSTUS intron 761515 762147 1 - . Parent=g119.t1 *************** *** 4244,4246 **** ! chrI AUGUSTUS intron 765898 767170 0.96 - . Parent=g119.t1 ! chrI AUGUSTUS intron 767831 768648 1 - . Parent=g119.t1 ! chrI AUGUSTUS intron 768873 769761 1 - . Parent=g119.t1 --- 4244,4246 ---- ! chrI AUGUSTUS intron 765898 767170 0.98 - . Parent=g119.t1 ! chrI AUGUSTUS intron 767831 768648 0.98 - . Parent=g119.t1 ! chrI AUGUSTUS intron 768873 769761 0.98 - . Parent=g119.t1 *************** *** 4248 **** ! chrI AUGUSTUS intron 771372 772770 0.99 - . Parent=g119.t1 --- 4248 ---- ! chrI AUGUSTUS intron 771372 772770 1 - . Parent=g119.t1 *************** *** 4252,4254 **** ! chrI AUGUSTUS intron 775896 775945 0.97 - . Parent=g119.t1 ! chrI AUGUSTUS CDS 761319 761514 0.99 - 1 ID=g119.t1.cds;Parent=g119.t1 ! chrI AUGUSTUS CDS 762148 762393 0.98 - 1 ID=g119.t1.cds;Parent=g119.t1 --- 4252,4254 ---- ! chrI AUGUSTUS intron 775896 775945 1 - . Parent=g119.t1 ! chrI AUGUSTUS CDS 761319 761514 1 - 1 ID=g119.t1.cds;Parent=g119.t1 ! chrI AUGUSTUS CDS 762148 762393 1 - 1 ID=g119.t1.cds;Parent=g119.t1 *************** *** 4259,4260 **** ! chrI AUGUSTUS CDS 768649 768872 1 - 1 ID=g119.t1.cds;Parent=g119.t1 ! chrI AUGUSTUS CDS 769762 769873 1 - 2 ID=g119.t1.cds;Parent=g119.t1 --- 4259,4260 ---- ! chrI AUGUSTUS CDS 768649 768872 0.98 - 1 ID=g119.t1.cds;Parent=g119.t1 ! chrI AUGUSTUS CDS 769762 769873 0.98 - 2 ID=g119.t1.cds;Parent=g119.t1 *************** *** 4262 **** ! chrI AUGUSTUS CDS 772771 772985 0.99 - 1 ID=g119.t1.cds;Parent=g119.t1 --- 4262 ---- ! chrI AUGUSTUS CDS 772771 772985 1 - 1 ID=g119.t1.cds;Parent=g119.t1 *************** *** 4266 **** ! chrI AUGUSTUS CDS 775946 776020 0.45 - 0 ID=g119.t1.cds;Parent=g119.t1 --- 4266 ---- ! chrI AUGUSTUS CDS 775946 776020 0.54 - 0 ID=g119.t1.cds;Parent=g119.t1 *************** *** 4268 **** ! chrI AUGUSTUS five_prime_utr 776021 776097 0.23 - . Parent=g119.t1 --- 4268 ---- ! chrI AUGUSTUS five_prime_utr 776021 776097 0.26 - . Parent=g119.t1 *************** *** 4298,4299 **** ! chrI AUGUSTUS gene 776391 778787 0.31 - . ID=g120 ! chrI AUGUSTUS transcript 776391 778787 0.31 - . ID=g120.t1;Parent=g120 --- 4298,4299 ---- ! chrI AUGUSTUS gene 776391 778787 0.28 - . ID=g120 ! chrI AUGUSTUS transcript 776391 778787 0.28 - . ID=g120.t1;Parent=g120 *************** *** 4303 **** ! chrI AUGUSTUS intron 776551 776987 1 - . Parent=g120.t1 --- 4303 ---- ! chrI AUGUSTUS intron 776551 776987 0.98 - . Parent=g120.t1 *************** *** 4307,4309 **** ! chrI AUGUSTUS CDS 776988 777099 1 - 1 ID=g120.t1.cds;Parent=g120.t1 ! chrI AUGUSTUS CDS 777149 777450 0.96 - 0 ID=g120.t1.cds;Parent=g120.t1 ! chrI AUGUSTUS CDS 778518 778718 0.86 - 0 ID=g120.t1.cds;Parent=g120.t1 --- 4307,4309 ---- ! chrI AUGUSTUS CDS 776988 777099 0.98 - 1 ID=g120.t1.cds;Parent=g120.t1 ! chrI AUGUSTUS CDS 777149 777450 0.98 - 0 ID=g120.t1.cds;Parent=g120.t1 ! chrI AUGUSTUS CDS 778518 778718 0.88 - 0 ID=g120.t1.cds;Parent=g120.t1 *************** *** 4311 **** ! chrI AUGUSTUS five_prime_utr 778719 778787 0.55 - . Parent=g120.t1 --- 4311 ---- ! chrI AUGUSTUS five_prime_utr 778719 778787 0.5 - . Parent=g120.t1 *************** *** 4328,4329 **** ! chrI AUGUSTUS gene 780819 784447 0.35 - . ID=g121 ! chrI AUGUSTUS transcript 780819 784447 0.35 - . ID=g121.t1;Parent=g121 --- 4328,4329 ---- ! chrI AUGUSTUS gene 780819 784447 0.26 - . ID=g121 ! chrI AUGUSTUS transcript 780819 784447 0.26 - . ID=g121.t1;Parent=g121 *************** *** 4336 **** ! chrI AUGUSTUS intron 782589 782645 0.99 - . Parent=g121.t1 --- 4336 ---- ! chrI AUGUSTUS intron 782589 782645 0.96 - . Parent=g121.t1 *************** *** 4338,4339 **** ! chrI AUGUSTUS intron 783057 783097 1 - . Parent=g121.t1 ! chrI AUGUSTUS intron 783174 783222 0.99 - . Parent=g121.t1 --- 4338,4339 ---- ! chrI AUGUSTUS intron 783057 783097 0.99 - . Parent=g121.t1 ! chrI AUGUSTUS intron 783174 783222 1 - . Parent=g121.t1 *************** *** 4341 **** ! chrI AUGUSTUS intron 783590 783642 0.89 - . Parent=g121.t1 --- 4341 ---- ! chrI AUGUSTUS intron 783590 783642 0.91 - . Parent=g121.t1 *************** *** 4344 **** ! chrI AUGUSTUS CDS 780851 781718 0.99 - 1 ID=g121.t1.cds;Parent=g121.t1 --- 4344 ---- ! chrI AUGUSTUS CDS 780851 781718 1 - 1 ID=g121.t1.cds;Parent=g121.t1 *************** *** 4348,4353 **** ! chrI AUGUSTUS CDS 782646 782791 0.99 - 1 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 782841 783056 1 - 1 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783098 783173 1 - 2 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783223 783361 0.97 - 0 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783525 783589 0.95 - 2 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783643 783776 0.91 - 1 ID=g121.t1.cds;Parent=g121.t1 --- 4348,4353 ---- ! chrI AUGUSTUS CDS 782646 782791 0.96 - 1 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 782841 783056 0.99 - 1 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783098 783173 0.99 - 2 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783223 783361 0.98 - 0 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783525 783589 0.94 - 2 ID=g121.t1.cds;Parent=g121.t1 ! chrI AUGUSTUS CDS 783643 783776 0.93 - 1 ID=g121.t1.cds;Parent=g121.t1 *************** *** 4357 **** ! chrI AUGUSTUS five_prime_utr 784273 784447 0.45 - . Parent=g121.t1 --- 4357 ---- ! chrI AUGUSTUS five_prime_utr 784273 784447 0.36 - . Parent=g121.t1 *************** *** 4379,4380 **** ! chrI AUGUSTUS gene 784623 785837 0.62 - . ID=g122 ! chrI AUGUSTUS transcript 784623 785837 0.62 - . ID=g122.t1;Parent=g122 --- 4379,4380 ---- ! chrI AUGUSTUS gene 784623 785837 0.72 - . ID=g122 ! chrI AUGUSTUS transcript 784623 785837 0.72 - . ID=g122.t1;Parent=g122 *************** *** 4382 **** ! chrI AUGUSTUS three_prime_utr 784623 784667 0.69 - . Parent=g122.t1 --- 4382 ---- ! chrI AUGUSTUS three_prime_utr 784623 784667 0.74 - . Parent=g122.t1 *************** *** 4388 **** ! chrI AUGUSTUS CDS 785596 785797 0.99 - 0 ID=g122.t1.cds;Parent=g122.t1 --- 4388 ---- ! chrI AUGUSTUS CDS 785596 785797 1 - 0 ID=g122.t1.cds;Parent=g122.t1 *************** *** 4390 **** ! chrI AUGUSTUS five_prime_utr 785798 785837 0.93 - . Parent=g122.t1 --- 4390 ---- ! chrI AUGUSTUS five_prime_utr 785798 785837 0.97 - . Parent=g122.t1 *************** *** 4407,4408 **** ! chrI AUGUSTUS gene 786358 787567 0.2 + . ID=g123 ! chrI AUGUSTUS transcript 786358 787567 0.2 + . ID=g123.t1;Parent=g123 --- 4407,4408 ---- ! chrI AUGUSTUS gene 786358 787567 0.18 + . ID=g123 ! chrI AUGUSTUS transcript 786358 787567 0.18 + . ID=g123.t1;Parent=g123 *************** *** 4410 **** ! chrI AUGUSTUS five_prime_utr 786358 786387 0.47 + . Parent=g123.t1 --- 4410 ---- ! chrI AUGUSTUS five_prime_utr 786358 786387 0.31 + . Parent=g123.t1 *************** *** 4414,4415 **** ! chrI AUGUSTUS CDS 786388 786502 1 + 0 ID=g123.t1.cds;Parent=g123.t1 ! chrI AUGUSTUS CDS 786708 787369 1 + 2 ID=g123.t1.cds;Parent=g123.t1 --- 4414,4415 ---- ! chrI AUGUSTUS CDS 786388 786502 0.99 + 0 ID=g123.t1.cds;Parent=g123.t1 ! chrI AUGUSTUS CDS 786708 787369 0.99 + 2 ID=g123.t1.cds;Parent=g123.t1 *************** *** 4418 **** ! chrI AUGUSTUS three_prime_utr 787514 787567 0.38 + . Parent=g123.t1 --- 4418 ---- ! chrI AUGUSTUS three_prime_utr 787514 787567 0.46 + . Parent=g123.t1 *************** *** 4435,4436 **** ! chrI AUGUSTUS gene 787955 788447 0.32 - . ID=g124 ! chrI AUGUSTUS transcript 787955 788447 0.32 - . ID=g124.t1;Parent=g124 --- 4435,4436 ---- ! chrI AUGUSTUS gene 787955 788447 0.33 - . ID=g124 ! chrI AUGUSTUS transcript 787955 788447 0.33 - . ID=g124.t1;Parent=g124 *************** *** 4438 **** ! chrI AUGUSTUS three_prime_utr 787955 787981 0.39 - . Parent=g124.t1 --- 4438 ---- ! chrI AUGUSTUS three_prime_utr 787955 787981 0.37 - . Parent=g124.t1 *************** *** 4442 **** ! chrI AUGUSTUS five_prime_utr 788420 788447 0.89 - . Parent=g124.t1 --- 4442 ---- ! chrI AUGUSTUS five_prime_utr 788420 788447 0.92 - . Parent=g124.t1 *************** *** 4457,4458 **** ! chrI AUGUSTUS gene 788750 790347 0.18 - . ID=g125 ! chrI AUGUSTUS transcript 788750 790347 0.18 - . ID=g125.t1;Parent=g125 --- 4457,4458 ---- ! chrI AUGUSTUS gene 788750 790347 0.23 - . ID=g125 ! chrI AUGUSTUS transcript 788750 790347 0.23 - . ID=g125.t1;Parent=g125 *************** *** 4460 **** ! chrI AUGUSTUS three_prime_utr 788750 788770 0.72 - . Parent=g125.t1 --- 4460 ---- ! chrI AUGUSTUS three_prime_utr 788750 788770 0.76 - . Parent=g125.t1 *************** *** 4462,4463 **** ! chrI AUGUSTUS intron 789214 789492 0.94 - . Parent=g125.t1 ! chrI AUGUSTUS intron 789641 789685 0.93 - . Parent=g125.t1 --- 4462,4463 ---- ! chrI AUGUSTUS intron 789214 789492 0.91 - . Parent=g125.t1 ! chrI AUGUSTUS intron 789641 789685 0.88 - . Parent=g125.t1 *************** *** 4466,4469 **** ! chrI AUGUSTUS intron 790131 790176 0.99 - . Parent=g125.t1 ! chrI AUGUSTUS CDS 788771 789213 0.63 - 2 ID=g125.t1.cds;Parent=g125.t1 ! chrI AUGUSTUS CDS 789493 789640 0.93 - 0 ID=g125.t1.cds;Parent=g125.t1 ! chrI AUGUSTUS CDS 789686 789750 0.93 - 2 ID=g125.t1.cds;Parent=g125.t1 --- 4466,4469 ---- ! chrI AUGUSTUS intron 790131 790176 1 - . Parent=g125.t1 ! chrI AUGUSTUS CDS 788771 789213 0.62 - 2 ID=g125.t1.cds;Parent=g125.t1 ! chrI AUGUSTUS CDS 789493 789640 0.88 - 0 ID=g125.t1.cds;Parent=g125.t1 ! chrI AUGUSTUS CDS 789686 789750 0.88 - 2 ID=g125.t1.cds;Parent=g125.t1 *************** *** 4472 **** ! chrI AUGUSTUS CDS 790177 790310 0.95 - 0 ID=g125.t1.cds;Parent=g125.t1 --- 4472 ---- ! chrI AUGUSTUS CDS 790177 790310 0.94 - 0 ID=g125.t1.cds;Parent=g125.t1 *************** *** 4474 **** ! chrI AUGUSTUS five_prime_utr 790311 790347 0.57 - . Parent=g125.t1 --- 4474 ---- ! chrI AUGUSTUS five_prime_utr 790311 790347 0.55 - . Parent=g125.t1 *************** *** 4495 **** ! chrI AUGUSTUS five_prime_utr 791668 791689 0.49 + . Parent=g126.t1 --- 4495 ---- ! chrI AUGUSTUS five_prime_utr 791668 791689 0.26 + . Parent=g126.t1 *************** *** 4497,4499 **** ! chrI AUGUSTUS intron 791791 791982 1 + . Parent=g126.t1 ! chrI AUGUSTUS intron 792090 792132 1 + . Parent=g126.t1 ! chrI AUGUSTUS intron 792239 792341 0.99 + . Parent=g126.t1 --- 4497,4499 ---- ! chrI AUGUSTUS intron 791791 791982 0.99 + . Parent=g126.t1 ! chrI AUGUSTUS intron 792090 792132 0.98 + . Parent=g126.t1 ! chrI AUGUSTUS intron 792239 792341 1 + . Parent=g126.t1 *************** *** 4502,4506 **** ! chrI AUGUSTUS intron 794251 794295 0.69 + . Parent=g126.t1 ! chrI AUGUSTUS intron 794383 794647 0.98 + . Parent=g126.t1 ! chrI AUGUSTUS intron 794893 795269 0.36 + . Parent=g126.t1 ! chrI AUGUSTUS intron 795361 796132 0.93 + . Parent=g126.t1 ! chrI AUGUSTUS intron 796211 796275 0.95 + . Parent=g126.t1 --- 4502,4506 ---- ! chrI AUGUSTUS intron 794251 794295 0.78 + . Parent=g126.t1 ! chrI AUGUSTUS intron 794383 794647 0.96 + . Parent=g126.t1 ! chrI AUGUSTUS intron 794893 795269 0.41 + . Parent=g126.t1 ! chrI AUGUSTUS intron 795361 796132 0.92 + . Parent=g126.t1 ! chrI AUGUSTUS intron 796211 796275 0.96 + . Parent=g126.t1 *************** *** 4510,4513 **** ! chrI AUGUSTUS intron 797064 797122 0.51 + . Parent=g126.t1 ! chrI AUGUSTUS CDS 791690 791790 0.99 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 791983 792089 1 + 1 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 792133 792238 0.99 + 2 ID=g126.t1.cds;Parent=g126.t1 --- 4510,4513 ---- ! chrI AUGUSTUS intron 797064 797122 0.48 + . Parent=g126.t1 ! chrI AUGUSTUS CDS 791690 791790 0.98 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 791983 792089 0.98 + 1 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 792133 792238 0.98 + 2 ID=g126.t1.cds;Parent=g126.t1 *************** *** 4516,4521 **** ! chrI AUGUSTUS CDS 794014 794250 0.68 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 794296 794382 0.72 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 794648 794892 0.36 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 795270 795360 0.36 + 1 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 796133 796210 0.93 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 796276 796397 0.98 + 0 ID=g126.t1.cds;Parent=g126.t1 --- 4516,4521 ---- ! chrI AUGUSTUS CDS 794014 794250 0.77 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 794296 794382 0.75 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 794648 794892 0.41 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 795270 795360 0.41 + 1 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 796133 796210 0.92 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 796276 796397 0.99 + 0 ID=g126.t1.cds;Parent=g126.t1 *************** *** 4524,4525 **** ! chrI AUGUSTUS CDS 796919 797063 0.51 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 797123 797262 0.99 + 2 ID=g126.t1.cds;Parent=g126.t1 --- 4524,4525 ---- ! chrI AUGUSTUS CDS 796919 797063 0.48 + 0 ID=g126.t1.cds;Parent=g126.t1 ! chrI AUGUSTUS CDS 797123 797262 1 + 2 ID=g126.t1.cds;Parent=g126.t1 *************** *** 4527 **** ! chrI AUGUSTUS three_prime_utr 797263 797333 0.88 + . Parent=g126.t1 --- 4527 ---- ! chrI AUGUSTUS three_prime_utr 797263 797333 0.82 + . Parent=g126.t1 *************** *** 4549,4550 **** ! chrI AUGUSTUS gene 798176 799907 0.63 - . ID=g127 ! chrI AUGUSTUS transcript 798176 799907 0.63 - . ID=g127.t1;Parent=g127 --- 4549,4550 ---- ! chrI AUGUSTUS gene 798176 799907 0.77 - . ID=g127 ! chrI AUGUSTUS transcript 798176 799907 0.77 - . ID=g127.t1;Parent=g127 *************** *** 4552 **** ! chrI AUGUSTUS three_prime_utr 798176 798213 0.71 - . Parent=g127.t1 --- 4552 ---- ! chrI AUGUSTUS three_prime_utr 798176 798213 0.81 - . Parent=g127.t1 *************** *** 4562 **** ! chrI AUGUSTUS five_prime_utr 799846 799907 0.9 - . Parent=g127.t1 --- 4562 ---- ! chrI AUGUSTUS five_prime_utr 799846 799907 0.96 - . Parent=g127.t1 *************** *** 4580,4581 **** ! chrI AUGUSTUS gene 802778 815815 0.06 + . ID=g128 ! chrI AUGUSTUS transcript 802778 815815 0.06 + . ID=g128.t1;Parent=g128 --- 4580,4581 ---- ! chrI AUGUSTUS gene 802778 815815 0.04 + . ID=g128 ! chrI AUGUSTUS transcript 802778 815815 0.04 + . ID=g128.t1;Parent=g128 *************** *** 4583 **** ! chrI AUGUSTUS five_prime_utr 802778 802822 0.2 + . Parent=g128.t1 --- 4583 ---- ! chrI AUGUSTUS five_prime_utr 802778 802822 0.18 + . Parent=g128.t1 *************** *** 4585,4586 **** ! chrI AUGUSTUS intron 802962 803997 0.99 + . Parent=g128.t1 ! chrI AUGUSTUS intron 804105 804151 1 + . Parent=g128.t1 --- 4585,4586 ---- ! chrI AUGUSTUS intron 802962 803997 1 + . Parent=g128.t1 ! chrI AUGUSTUS intron 804105 804151 0.99 + . Parent=g128.t1 *************** *** 4588,4590 **** ! chrI AUGUSTUS intron 805232 805324 0.97 + . Parent=g128.t1 ! chrI AUGUSTUS intron 805401 805455 0.97 + . Parent=g128.t1 ! chrI AUGUSTUS intron 805724 805770 0.74 + . Parent=g128.t1 --- 4588,4590 ---- ! chrI AUGUSTUS intron 805232 805324 0.99 + . Parent=g128.t1 ! chrI AUGUSTUS intron 805401 805455 0.99 + . Parent=g128.t1 ! chrI AUGUSTUS intron 805724 805770 0.81 + . Parent=g128.t1 *************** *** 4592 **** ! chrI AUGUSTUS intron 806973 807018 0.8 + . Parent=g128.t1 --- 4592 ---- ! chrI AUGUSTUS intron 806973 807018 0.82 + . Parent=g128.t1 *************** *** 4596 **** ! chrI AUGUSTUS intron 808446 808660 0.87 + . Parent=g128.t1 --- 4596 ---- ! chrI AUGUSTUS intron 808446 808660 0.85 + . Parent=g128.t1 *************** *** 4605 **** ! chrI AUGUSTUS intron 811624 811674 0.98 + . Parent=g128.t1 --- 4605 ---- ! chrI AUGUSTUS intron 811624 811674 1 + . Parent=g128.t1 *************** *** 4608 **** ! chrI AUGUSTUS intron 812940 813000 1 + . Parent=g128.t1 --- 4608 ---- ! chrI AUGUSTUS intron 812940 813000 0.99 + . Parent=g128.t1 *************** *** 4612 **** ! chrI AUGUSTUS intron 813749 814095 0.8 + . Parent=g128.t1 --- 4612 ---- ! chrI AUGUSTUS intron 813749 814095 0.84 + . Parent=g128.t1 *************** *** 4617,4618 **** ! chrI AUGUSTUS CDS 804939 805231 0.97 + 2 ID=g128.t1.cds;Parent=g128.t1 ! chrI AUGUSTUS CDS 805325 805400 0.96 + 0 ID=g128.t1.cds;Parent=g128.t1 --- 4617,4618 ---- ! chrI AUGUSTUS CDS 804939 805231 0.99 + 2 ID=g128.t1.cds;Parent=g128.t1 ! chrI AUGUSTUS CDS 805325 805400 0.99 + 0 ID=g128.t1.cds;Parent=g128.t1 *************** *** 4620,4621 **** ! chrI AUGUSTUS CDS 805771 806032 0.74 + 1 ID=g128.t1.cds;Parent=g128.t1 ! chrI AUGUSTUS CDS 806795 806972 0.8 + 0 ID=g128.t1.cds;Parent=g128.t1 --- 4620,4621 ---- ! chrI AUGUSTUS CDS 805771 806032 0.81 + 1 ID=g128.t1.cds;Parent=g128.t1 ! chrI AUGUSTUS CDS 806795 806972 0.82 + 0 ID=g128.t1.cds;Parent=g128.t1 *************** *** 4631 **** ! chrI AUGUSTUS CDS 810290 810588 1 + 2 ID=g128.t1.cds;Parent=g128.t1 --- 4631 ---- ! chrI AUGUSTUS CDS 810290 810588 0.99 + 2 ID=g128.t1.cds;Parent=g128.t1 *************** *** 4634 **** ! chrI AUGUSTUS CDS 811471 811623 0.98 + 2 ID=g128.t1.cds;Parent=g128.t1 --- 4634 ---- ! chrI AUGUSTUS CDS 811471 811623 1 + 2 ID=g128.t1.cds;Parent=g128.t1 *************** *** 4637 **** ! chrI AUGUSTUS CDS 812786 812939 1 + 0 ID=g128.t1.cds;Parent=g128.t1 --- 4637 ---- ! chrI AUGUSTUS CDS 812786 812939 0.99 + 0 ID=g128.t1.cds;Parent=g128.t1 *************** *** 4642,4643 **** ! chrI AUGUSTUS CDS 814096 814361 0.8 + 0 ID=g128.t1.cds;Parent=g128.t1 ! chrI AUGUSTUS CDS 815467 815644 0.97 + 1 ID=g128.t1.cds;Parent=g128.t1 --- 4642,4643 ---- ! chrI AUGUSTUS CDS 814096 814361 0.84 + 0 ID=g128.t1.cds;Parent=g128.t1 ! chrI AUGUSTUS CDS 815467 815644 0.98 + 1 ID=g128.t1.cds;Parent=g128.t1 *************** *** 4645 **** ! chrI AUGUSTUS three_prime_utr 815645 815815 0.56 + . Parent=g128.t1 --- 4645 ---- ! chrI AUGUSTUS three_prime_utr 815645 815815 0.54 + . Parent=g128.t1 *************** *** 4678,4679 **** ! chrI AUGUSTUS gene 816458 820763 0.04 + . ID=g129 ! chrI AUGUSTUS transcript 816458 820763 0.04 + . ID=g129.t1;Parent=g129 --- 4678,4679 ---- ! chrI AUGUSTUS gene 816458 820763 0.02 + . ID=g129 ! chrI AUGUSTUS transcript 816458 820763 0.02 + . ID=g129.t1;Parent=g129 *************** *** 4681 **** ! chrI AUGUSTUS five_prime_utr 816458 816484 0.33 + . Parent=g129.t1 --- 4681 ---- ! chrI AUGUSTUS five_prime_utr 816458 816484 0.28 + . Parent=g129.t1 *************** *** 4686,4688 **** ! chrI AUGUSTUS intron 817627 819484 0.22 + . Parent=g129.t1 ! chrI AUGUSTUS intron 819697 819764 0.89 + . Parent=g129.t1 ! chrI AUGUSTUS intron 819837 819890 0.87 + . Parent=g129.t1 --- 4686,4688 ---- ! chrI AUGUSTUS intron 817627 819484 0.17 + . Parent=g129.t1 ! chrI AUGUSTUS intron 819697 819764 0.91 + . Parent=g129.t1 ! chrI AUGUSTUS intron 819837 819890 0.9 + . Parent=g129.t1 *************** *** 4693,4696 **** ! chrI AUGUSTUS CDS 817555 817626 0.22 + 0 ID=g129.t1.cds;Parent=g129.t1 ! chrI AUGUSTUS CDS 819485 819696 0.97 + 0 ID=g129.t1.cds;Parent=g129.t1 ! chrI AUGUSTUS CDS 819765 819836 0.89 + 1 ID=g129.t1.cds;Parent=g129.t1 ! chrI AUGUSTUS CDS 819891 820008 0.98 + 1 ID=g129.t1.cds;Parent=g129.t1 --- 4693,4696 ---- ! chrI AUGUSTUS CDS 817555 817626 0.17 + 0 ID=g129.t1.cds;Parent=g129.t1 ! chrI AUGUSTUS CDS 819485 819696 0.96 + 0 ID=g129.t1.cds;Parent=g129.t1 ! chrI AUGUSTUS CDS 819765 819836 0.91 + 1 ID=g129.t1.cds;Parent=g129.t1 ! chrI AUGUSTUS CDS 819891 820008 0.99 + 1 ID=g129.t1.cds;Parent=g129.t1 *************** *** 4699 **** ! chrI AUGUSTUS three_prime_utr 820690 820763 0.31 + . Parent=g129.t1 --- 4699 ---- ! chrI AUGUSTUS three_prime_utr 820690 820763 0.3 + . Parent=g129.t1 *************** *** 4750 **** ! chrI AUGUSTUS three_prime_utr 822236 822933 0.82 - . Parent=g131.t1 --- 4750 ---- ! chrI AUGUSTUS three_prime_utr 822236 822933 0.86 - . Parent=g131.t1 *************** *** 4752,4753 **** ! chrI AUGUSTUS intron 823011 823479 0.95 - . Parent=g131.t1 ! chrI AUGUSTUS intron 823939 824877 0.96 - . Parent=g131.t1 --- 4752,4753 ---- ! chrI AUGUSTUS intron 823011 823479 0.96 - . Parent=g131.t1 ! chrI AUGUSTUS intron 823939 824877 0.94 - . Parent=g131.t1 *************** *** 4755,4760 **** ! chrI AUGUSTUS intron 828600 830119 0.95 - . Parent=g131.t1 ! chrI AUGUSTUS CDS 822934 823010 0.95 - 2 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 823480 823938 0.99 - 2 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 824878 825430 0.96 - 0 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 828481 828599 0.95 - 2 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 830120 830294 0.76 - 0 ID=g131.t1.cds;Parent=g131.t1 --- 4755,4760 ---- ! chrI AUGUSTUS intron 828600 830119 0.97 - . Parent=g131.t1 ! chrI AUGUSTUS CDS 822934 823010 0.96 - 2 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 823480 823938 1 - 2 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 824878 825430 0.94 - 0 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 828481 828599 0.98 - 2 ID=g131.t1.cds;Parent=g131.t1 ! chrI AUGUSTUS CDS 830120 830294 0.73 - 0 ID=g131.t1.cds;Parent=g131.t1 *************** *** 4762 **** ! chrI AUGUSTUS five_prime_utr 830295 830357 0.3 - . Parent=g131.t1 --- 4762 ---- ! chrI AUGUSTUS five_prime_utr 830295 830357 0.29 - . Parent=g131.t1 *************** *** 4781,4782 **** ! chrI AUGUSTUS gene 846948 849832 0.03 + . ID=g132 ! chrI AUGUSTUS transcript 846948 849832 0.03 + . ID=g132.t1;Parent=g132 --- 4781,4782 ---- ! chrI AUGUSTUS gene 846948 849832 0.02 + . ID=g132 ! chrI AUGUSTUS transcript 846948 849832 0.02 + . ID=g132.t1;Parent=g132 *************** *** 4784 **** ! chrI AUGUSTUS five_prime_utr 846948 846974 0.12 + . Parent=g132.t1 --- 4784 ---- ! chrI AUGUSTUS five_prime_utr 846948 846974 0.1 + . Parent=g132.t1 *************** *** 4788,4790 **** ! chrI AUGUSTUS intron 848588 849255 0.99 + . Parent=g132.t1 ! chrI AUGUSTUS intron 849388 849679 0.97 + . Parent=g132.t1 ! chrI AUGUSTUS CDS 846975 847055 0.31 + 0 ID=g132.t1.cds;Parent=g132.t1 --- 4788,4790 ---- ! chrI AUGUSTUS intron 848588 849255 1 + . Parent=g132.t1 ! chrI AUGUSTUS intron 849388 849679 0.99 + . Parent=g132.t1 ! chrI AUGUSTUS CDS 846975 847055 0.35 + 0 ID=g132.t1.cds;Parent=g132.t1 *************** *** 4792,4794 **** ! chrI AUGUSTUS CDS 848045 848587 0.71 + 0 ID=g132.t1.cds;Parent=g132.t1 ! chrI AUGUSTUS CDS 849256 849387 0.96 + 0 ID=g132.t1.cds;Parent=g132.t1 ! chrI AUGUSTUS CDS 849680 849793 0.98 + 0 ID=g132.t1.cds;Parent=g132.t1 --- 4792,4794 ---- ! chrI AUGUSTUS CDS 848045 848587 0.75 + 0 ID=g132.t1.cds;Parent=g132.t1 ! chrI AUGUSTUS CDS 849256 849387 0.99 + 0 ID=g132.t1.cds;Parent=g132.t1 ! chrI AUGUSTUS CDS 849680 849793 0.99 + 0 ID=g132.t1.cds;Parent=g132.t1 *************** *** 4796 **** ! chrI AUGUSTUS three_prime_utr 849794 849832 0.22 + . Parent=g132.t1 --- 4796 ---- ! chrI AUGUSTUS three_prime_utr 849794 849832 0.21 + . Parent=g132.t1 *************** *** 4818 **** ! chrI AUGUSTUS three_prime_utr 851958 852030 0.86 - . Parent=g133.t1 --- 4818 ---- ! chrI AUGUSTUS three_prime_utr 851958 852030 0.79 - . Parent=g133.t1 *************** *** 4822 **** ! chrI AUGUSTUS intron 853261 853315 0.95 - . Parent=g133.t1 --- 4822 ---- ! chrI AUGUSTUS intron 853261 853315 0.99 - . Parent=g133.t1 *************** *** 4825,4826 **** ! chrI AUGUSTUS CDS 853159 853260 0.95 - 2 ID=g133.t1.cds;Parent=g133.t1 ! chrI AUGUSTUS CDS 853316 853319 0.92 - 0 ID=g133.t1.cds;Parent=g133.t1 --- 4825,4826 ---- ! chrI AUGUSTUS CDS 853159 853260 0.99 - 2 ID=g133.t1.cds;Parent=g133.t1 ! chrI AUGUSTUS CDS 853316 853319 0.98 - 0 ID=g133.t1.cds;Parent=g133.t1 *************** *** 4828 **** ! chrI AUGUSTUS five_prime_utr 853320 853384 0.84 - . Parent=g133.t1 --- 4828 ---- ! chrI AUGUSTUS five_prime_utr 853320 853384 0.94 - . Parent=g133.t1 *************** *** 4843,4844 **** ! chrI AUGUSTUS gene 853926 855754 0.1 - . ID=g134 ! chrI AUGUSTUS transcript 853926 855754 0.1 - . ID=g134.t1;Parent=g134 --- 4843,4844 ---- ! chrI AUGUSTUS gene 853926 855754 0.18 - . ID=g134 ! chrI AUGUSTUS transcript 853926 855754 0.18 - . ID=g134.t1;Parent=g134 *************** *** 4846 **** ! chrI AUGUSTUS three_prime_utr 853926 854051 0.39 - . Parent=g134.t1 --- 4846 ---- ! chrI AUGUSTUS three_prime_utr 853926 854051 0.43 - . Parent=g134.t1 *************** *** 4849,4850 **** ! chrI AUGUSTUS intron 854405 854452 0.73 - . Parent=g134.t1 ! chrI AUGUSTUS intron 855251 855572 0.97 - . Parent=g134.t1 --- 4849,4850 ---- ! chrI AUGUSTUS intron 854405 854452 0.85 - . Parent=g134.t1 ! chrI AUGUSTUS intron 855251 855572 0.94 - . Parent=g134.t1 *************** *** 4852,4854 **** ! chrI AUGUSTUS CDS 854192 854404 0.74 - 0 ID=g134.t1.cds;Parent=g134.t1 ! chrI AUGUSTUS CDS 854453 855250 0.73 - 0 ID=g134.t1.cds;Parent=g134.t1 ! chrI AUGUSTUS CDS 855573 855671 0.97 - 0 ID=g134.t1.cds;Parent=g134.t1 --- 4852,4854 ---- ! chrI AUGUSTUS CDS 854192 854404 0.85 - 0 ID=g134.t1.cds;Parent=g134.t1 ! chrI AUGUSTUS CDS 854453 855250 0.85 - 0 ID=g134.t1.cds;Parent=g134.t1 ! chrI AUGUSTUS CDS 855573 855671 0.94 - 0 ID=g134.t1.cds;Parent=g134.t1 *************** *** 4856 **** ! chrI AUGUSTUS five_prime_utr 855672 855754 0.38 - . Parent=g134.t1 --- 4856 ---- ! chrI AUGUSTUS five_prime_utr 855672 855754 0.39 - . Parent=g134.t1 *************** *** 4874,4875 **** ! chrI AUGUSTUS gene 866305 869399 0.39 + . ID=g135 ! chrI AUGUSTUS transcript 866305 869399 0.39 + . ID=g135.t1;Parent=g135 --- 4874,4875 ---- ! chrI AUGUSTUS gene 866305 869399 0.35 + . ID=g135 ! chrI AUGUSTUS transcript 866305 869399 0.35 + . ID=g135.t1;Parent=g135 *************** *** 4877 **** ! chrI AUGUSTUS five_prime_utr 866305 866540 0.85 + . Parent=g135.t1 --- 4877 ---- ! chrI AUGUSTUS five_prime_utr 866305 866540 0.83 + . Parent=g135.t1 *************** *** 4879,4880 **** ! chrI AUGUSTUS intron 866607 867244 0.53 + . Parent=g135.t1 ! chrI AUGUSTUS intron 867308 867426 0.73 + . Parent=g135.t1 --- 4879,4880 ---- ! chrI AUGUSTUS intron 866607 867244 0.5 + . Parent=g135.t1 ! chrI AUGUSTUS intron 867308 867426 0.72 + . Parent=g135.t1 *************** *** 4882,4883 **** ! chrI AUGUSTUS intron 867932 868968 0.93 + . Parent=g135.t1 ! chrI AUGUSTUS intron 869075 869194 0.92 + . Parent=g135.t1 --- 4882,4883 ---- ! chrI AUGUSTUS intron 867932 868968 0.91 + . Parent=g135.t1 ! chrI AUGUSTUS intron 869075 869194 0.88 + . Parent=g135.t1 *************** *** 4885 **** ! chrI AUGUSTUS CDS 867245 867307 0.73 + 0 ID=g135.t1.cds;Parent=g135.t1 --- 4885 ---- ! chrI AUGUSTUS CDS 867245 867307 0.72 + 0 ID=g135.t1.cds;Parent=g135.t1 *************** *** 4888,4889 **** ! chrI AUGUSTUS CDS 868969 869074 0.92 + 2 ID=g135.t1.cds;Parent=g135.t1 ! chrI AUGUSTUS CDS 869195 869255 0.92 + 1 ID=g135.t1.cds;Parent=g135.t1 --- 4888,4889 ---- ! chrI AUGUSTUS CDS 868969 869074 0.88 + 2 ID=g135.t1.cds;Parent=g135.t1 ! chrI AUGUSTUS CDS 869195 869255 0.88 + 1 ID=g135.t1.cds;Parent=g135.t1 *************** *** 4891 **** ! chrI AUGUSTUS three_prime_utr 869256 869399 0.82 + . Parent=g135.t1 --- 4891 ---- ! chrI AUGUSTUS three_prime_utr 869256 869399 0.79 + . Parent=g135.t1 *************** *** 4908,4909 **** ! chrI AUGUSTUS gene 870496 875324 0.15 - . ID=g136 ! chrI AUGUSTUS transcript 870496 875324 0.15 - . ID=g136.t1;Parent=g136 --- 4908,4909 ---- ! chrI AUGUSTUS gene 870496 875324 0.2 - . ID=g136 ! chrI AUGUSTUS transcript 870496 875324 0.2 - . ID=g136.t1;Parent=g136 *************** *** 4913,4917 **** ! chrI AUGUSTUS intron 870633 871498 0.76 - . Parent=g136.t1 ! chrI AUGUSTUS intron 871717 872666 1 - . Parent=g136.t1 ! chrI AUGUSTUS intron 872755 873115 0.68 - . Parent=g136.t1 ! chrI AUGUSTUS intron 873227 874418 0.74 - . Parent=g136.t1 ! chrI AUGUSTUS intron 874521 874869 0.78 - . Parent=g136.t1 --- 4913,4917 ---- ! chrI AUGUSTUS intron 870633 871498 0.67 - . Parent=g136.t1 ! chrI AUGUSTUS intron 871717 872666 0.99 - . Parent=g136.t1 ! chrI AUGUSTUS intron 872755 873115 0.75 - . Parent=g136.t1 ! chrI AUGUSTUS intron 873227 874418 0.86 - . Parent=g136.t1 ! chrI AUGUSTUS intron 874521 874869 0.87 - . Parent=g136.t1 *************** *** 4919,4924 **** ! chrI AUGUSTUS intron 875154 875203 0.99 - . Parent=g136.t1 ! chrI AUGUSTUS CDS 870609 870632 0.76 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 871499 871716 1 - 2 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 872667 872754 0.75 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 873116 873226 0.9 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 874419 874520 0.78 - 0 ID=g136.t1.cds;Parent=g136.t1 --- 4919,4924 ---- ! chrI AUGUSTUS intron 875154 875203 1 - . Parent=g136.t1 ! chrI AUGUSTUS CDS 870609 870632 0.67 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 871499 871716 0.99 - 2 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 872667 872754 0.78 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 873116 873226 0.95 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 874419 874520 0.87 - 0 ID=g136.t1.cds;Parent=g136.t1 *************** *** 4926,4927 **** ! chrI AUGUSTUS CDS 875083 875153 0.99 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 875204 875290 0.97 - 0 ID=g136.t1.cds;Parent=g136.t1 --- 4926,4927 ---- ! chrI AUGUSTUS CDS 875083 875153 1 - 0 ID=g136.t1.cds;Parent=g136.t1 ! chrI AUGUSTUS CDS 875204 875290 0.99 - 0 ID=g136.t1.cds;Parent=g136.t1 *************** *** 4929 **** ! chrI AUGUSTUS five_prime_utr 875291 875324 0.91 - . Parent=g136.t1 --- 4929 ---- ! chrI AUGUSTUS five_prime_utr 875291 875324 0.9 - . Parent=g136.t1 *************** *** 4947,4948 **** ! chrI AUGUSTUS gene 875398 876334 0.81 - . ID=g137 ! chrI AUGUSTUS transcript 875398 876334 0.81 - . ID=g137.t1;Parent=g137 --- 4947,4948 ---- ! chrI AUGUSTUS gene 875398 876334 0.82 - . ID=g137 ! chrI AUGUSTUS transcript 875398 876334 0.82 - . ID=g137.t1;Parent=g137 *************** *** 4952 **** ! chrI AUGUSTUS intron 875603 875650 1 - . Parent=g137.t1 --- 4952 ---- ! chrI AUGUSTUS intron 875603 875650 0.96 - . Parent=g137.t1 *************** *** 4954,4955 **** ! chrI AUGUSTUS CDS 875432 875602 1 - 0 ID=g137.t1.cds;Parent=g137.t1 ! chrI AUGUSTUS CDS 875651 875972 1 - 1 ID=g137.t1.cds;Parent=g137.t1 --- 4954,4955 ---- ! chrI AUGUSTUS CDS 875432 875602 0.96 - 0 ID=g137.t1.cds;Parent=g137.t1 ! chrI AUGUSTUS CDS 875651 875972 0.96 - 1 ID=g137.t1.cds;Parent=g137.t1 *************** *** 4958 **** ! chrI AUGUSTUS five_prime_utr 876304 876334 0.81 - . Parent=g137.t1 --- 4958 ---- ! chrI AUGUSTUS five_prime_utr 876304 876334 0.84 - . Parent=g137.t1 *************** *** 4974,4975 **** ! chrI AUGUSTUS gene 876715 878522 0.63 + . ID=g138 ! chrI AUGUSTUS transcript 876715 878522 0.63 + . ID=g138.t1;Parent=g138 --- 4974,4975 ---- ! chrI AUGUSTUS gene 876715 878522 0.49 + . ID=g138 ! chrI AUGUSTUS transcript 876715 878522 0.49 + . ID=g138.t1;Parent=g138 *************** *** 4977 **** ! chrI AUGUSTUS five_prime_utr 876715 876936 0.92 + . Parent=g138.t1 --- 4977 ---- ! chrI AUGUSTUS five_prime_utr 876715 876936 0.96 + . Parent=g138.t1 *************** *** 4987 **** ! chrI AUGUSTUS three_prime_utr 878039 878522 0.67 + . Parent=g138.t1 --- 4987 ---- ! chrI AUGUSTUS three_prime_utr 878039 878522 0.52 + . Parent=g138.t1 *************** *** 5006,5007 **** ! chrI AUGUSTUS gene 878675 880934 0.68 + . ID=g139 ! chrI AUGUSTUS transcript 878675 880934 0.68 + . ID=g139.t1;Parent=g139 --- 5006,5007 ---- ! chrI AUGUSTUS gene 878675 880934 0.51 + . ID=g139 ! chrI AUGUSTUS transcript 878675 880934 0.51 + . ID=g139.t1;Parent=g139 *************** *** 5009 **** ! chrI AUGUSTUS five_prime_utr 878675 878834 0.89 + . Parent=g139.t1 --- 5009 ---- ! chrI AUGUSTUS five_prime_utr 878675 878834 0.83 + . Parent=g139.t1 *************** *** 5013,5015 **** ! chrI AUGUSTUS intron 879555 880145 0.98 + . Parent=g139.t1 ! chrI AUGUSTUS intron 880392 880769 0.96 + . Parent=g139.t1 ! chrI AUGUSTUS CDS 878835 878950 1 + 0 ID=g139.t1.cds;Parent=g139.t1 --- 5013,5015 ---- ! chrI AUGUSTUS intron 879555 880145 0.97 + . Parent=g139.t1 ! chrI AUGUSTUS intron 880392 880769 0.91 + . Parent=g139.t1 ! chrI AUGUSTUS CDS 878835 878950 0.99 + 0 ID=g139.t1.cds;Parent=g139.t1 *************** *** 5017,5019 **** ! chrI AUGUSTUS CDS 879452 879554 0.98 + 1 ID=g139.t1.cds;Parent=g139.t1 ! chrI AUGUSTUS CDS 880146 880391 0.96 + 0 ID=g139.t1.cds;Parent=g139.t1 ! chrI AUGUSTUS CDS 880770 880856 0.96 + 0 ID=g139.t1.cds;Parent=g139.t1 --- 5017,5019 ---- ! chrI AUGUSTUS CDS 879452 879554 0.97 + 1 ID=g139.t1.cds;Parent=g139.t1 ! chrI AUGUSTUS CDS 880146 880391 0.91 + 0 ID=g139.t1.cds;Parent=g139.t1 ! chrI AUGUSTUS CDS 880770 880856 0.91 + 0 ID=g139.t1.cds;Parent=g139.t1 *************** *** 5021 **** ! chrI AUGUSTUS three_prime_utr 880857 880934 0.77 + . Parent=g139.t1 --- 5021 ---- ! chrI AUGUSTUS three_prime_utr 880857 880934 0.62 + . Parent=g139.t1 *************** *** 5039,5040 **** ! chrI AUGUSTUS gene 881932 883544 0.25 - . ID=g140 ! chrI AUGUSTUS transcript 881932 883544 0.25 - . ID=g140.t1;Parent=g140 --- 5039,5040 ---- ! chrI AUGUSTUS gene 881932 883544 0.21 - . ID=g140 ! chrI AUGUSTUS transcript 881932 883544 0.21 - . ID=g140.t1;Parent=g140 *************** *** 5042 **** ! chrI AUGUSTUS three_prime_utr 881932 881996 0.42 - . Parent=g140.t1 --- 5042 ---- ! chrI AUGUSTUS three_prime_utr 881932 881996 0.41 - . Parent=g140.t1 *************** *** 5044,5046 **** ! chrI AUGUSTUS intron 882363 883324 0.99 - . Parent=g140.t1 ! chrI AUGUSTUS CDS 881997 882362 0.78 - 0 ID=g140.t1.cds;Parent=g140.t1 ! chrI AUGUSTUS CDS 883325 883441 0.99 - 0 ID=g140.t1.cds;Parent=g140.t1 --- 5044,5046 ---- ! chrI AUGUSTUS intron 882363 883324 1 - . Parent=g140.t1 ! chrI AUGUSTUS CDS 881997 882362 0.66 - 0 ID=g140.t1.cds;Parent=g140.t1 ! chrI AUGUSTUS CDS 883325 883441 1 - 0 ID=g140.t1.cds;Parent=g140.t1 *************** *** 5048 **** ! chrI AUGUSTUS five_prime_utr 883442 883544 0.53 - . Parent=g140.t1 --- 5048 ---- ! chrI AUGUSTUS five_prime_utr 883442 883544 0.57 - . Parent=g140.t1 *************** *** 5064,5065 **** ! chrI AUGUSTUS gene 883635 887274 0.26 - . ID=g141 ! chrI AUGUSTUS transcript 883635 887274 0.26 - . ID=g141.t1;Parent=g141 --- 5064,5065 ---- ! chrI AUGUSTUS gene 883635 887274 0.22 - . ID=g141 ! chrI AUGUSTUS transcript 883635 887274 0.22 - . ID=g141.t1;Parent=g141 *************** *** 5067 **** ! chrI AUGUSTUS three_prime_utr 883635 883864 0.3 - . Parent=g141.t1 --- 5067 ---- ! chrI AUGUSTUS three_prime_utr 883635 883864 0.26 - . Parent=g141.t1 *************** *** 5069,5070 **** ! chrI AUGUSTUS intron 883961 885745 1 - . Parent=g141.t1 ! chrI AUGUSTUS intron 886409 887234 0.96 - . Parent=g141.t1 --- 5069,5070 ---- ! chrI AUGUSTUS intron 883961 885745 0.97 - . Parent=g141.t1 ! chrI AUGUSTUS intron 886409 887234 0.97 - . Parent=g141.t1 *************** *** 5072,5073 **** ! chrI AUGUSTUS CDS 885746 886408 0.96 - 0 ID=g141.t1.cds;Parent=g141.t1 ! chrI AUGUSTUS CDS 887235 887246 0.96 - 0 ID=g141.t1.cds;Parent=g141.t1 --- 5072,5073 ---- ! chrI AUGUSTUS CDS 885746 886408 0.94 - 0 ID=g141.t1.cds;Parent=g141.t1 ! chrI AUGUSTUS CDS 887235 887246 0.97 - 0 ID=g141.t1.cds;Parent=g141.t1 *************** *** 5075 **** ! chrI AUGUSTUS five_prime_utr 887247 887274 0.9 - . Parent=g141.t1 --- 5075 ---- ! chrI AUGUSTUS five_prime_utr 887247 887274 0.92 - . Parent=g141.t1 *************** *** 5093,5094 **** ! chrI AUGUSTUS gene 887385 887700 0.95 + . ID=g142 ! chrI AUGUSTUS transcript 887385 887700 0.95 + . ID=g142.t1;Parent=g142 --- 5093,5094 ---- ! chrI AUGUSTUS gene 887385 887700 0.92 + . ID=g142 ! chrI AUGUSTUS transcript 887385 887700 0.92 + . ID=g142.t1;Parent=g142 *************** *** 5096 **** ! chrI AUGUSTUS five_prime_utr 887385 887419 0.96 + . Parent=g142.t1 --- 5096 ---- ! chrI AUGUSTUS five_prime_utr 887385 887419 0.93 + . Parent=g142.t1 *************** *** 5118 **** ! chrI AUGUSTUS five_prime_utr 887755 887800 0.97 + . Parent=g143.t1 --- 5118 ---- ! chrI AUGUSTUS five_prime_utr 887755 887800 1 + . Parent=g143.t1 *************** *** 5120 **** ! chrI AUGUSTUS CDS 887801 888355 0.94 + 0 ID=g143.t1.cds;Parent=g143.t1 --- 5120 ---- ! chrI AUGUSTUS CDS 887801 888355 0.95 + 0 ID=g143.t1.cds;Parent=g143.t1 *************** *** 5122 **** ! chrI AUGUSTUS three_prime_utr 888356 888431 0.49 + . Parent=g143.t1 --- 5122 ---- ! chrI AUGUSTUS three_prime_utr 888356 888431 0.46 + . Parent=g143.t1 *************** *** 5139,5140 **** ! chrI AUGUSTUS gene 888875 889397 0.04 + . ID=g144 ! chrI AUGUSTUS transcript 888875 889397 0.04 + . ID=g144.t1;Parent=g144 --- 5139,5140 ---- ! chrI AUGUSTUS gene 888875 889397 0.03 + . ID=g144 ! chrI AUGUSTUS transcript 888875 889397 0.03 + . ID=g144.t1;Parent=g144 *************** *** 5142 **** ! chrI AUGUSTUS five_prime_utr 888875 888900 0.2 + . Parent=g144.t1 --- 5142 ---- ! chrI AUGUSTUS five_prime_utr 888875 888900 0.13 + . Parent=g144.t1 *************** *** 5144 **** ! chrI AUGUSTUS CDS 888901 889356 0.25 + 0 ID=g144.t1.cds;Parent=g144.t1 --- 5144 ---- ! chrI AUGUSTUS CDS 888901 889356 0.3 + 0 ID=g144.t1.cds;Parent=g144.t1 *************** *** 5146 **** ! chrI AUGUSTUS three_prime_utr 889357 889397 0.22 + . Parent=g144.t1 --- 5146 ---- ! chrI AUGUSTUS three_prime_utr 889357 889397 0.26 + . Parent=g144.t1 *************** *** 5162,5163 **** ! chrI AUGUSTUS gene 890675 891285 0.28 + . ID=g145 ! chrI AUGUSTUS transcript 890675 891285 0.28 + . ID=g145.t1;Parent=g145 --- 5162,5163 ---- ! chrI AUGUSTUS gene 890675 891285 0.31 + . ID=g145 ! chrI AUGUSTUS transcript 890675 891285 0.31 + . ID=g145.t1;Parent=g145 *************** *** 5165 **** ! chrI AUGUSTUS five_prime_utr 890675 890830 0.67 + . Parent=g145.t1 --- 5165 ---- ! chrI AUGUSTUS five_prime_utr 890675 890830 0.74 + . Parent=g145.t1 *************** *** 5167 **** ! chrI AUGUSTUS CDS 890831 891262 0.55 + 0 ID=g145.t1.cds;Parent=g145.t1 --- 5167 ---- ! chrI AUGUSTUS CDS 890831 891262 0.47 + 0 ID=g145.t1.cds;Parent=g145.t1 *************** *** 5169 **** ! chrI AUGUSTUS three_prime_utr 891263 891285 0.46 + . Parent=g145.t1 --- 5169 ---- ! chrI AUGUSTUS three_prime_utr 891263 891285 0.39 + . Parent=g145.t1 *************** *** 5185,5186 **** ! chrI AUGUSTUS gene 892114 893744 0.35 - . ID=g146 ! chrI AUGUSTUS transcript 892114 893744 0.35 - . ID=g146.t1;Parent=g146 --- 5185,5186 ---- ! chrI AUGUSTUS gene 892114 893744 0.29 - . ID=g146 ! chrI AUGUSTUS transcript 892114 893744 0.29 - . ID=g146.t1;Parent=g146 *************** *** 5188 **** ! chrI AUGUSTUS three_prime_utr 892114 892143 0.73 - . Parent=g146.t1 --- 5188 ---- ! chrI AUGUSTUS three_prime_utr 892114 892143 0.74 - . Parent=g146.t1 *************** *** 5190 **** ! chrI AUGUSTUS intron 892156 892633 0.95 - . Parent=g146.t1 --- 5190 ---- ! chrI AUGUSTUS intron 892156 892633 0.92 - . Parent=g146.t1 *************** *** 5192,5195 **** ! chrI AUGUSTUS intron 893558 893611 0.95 - . Parent=g146.t1 ! chrI AUGUSTUS CDS 892144 892155 0.95 - 0 ID=g146.t1.cds;Parent=g146.t1 ! chrI AUGUSTUS CDS 892634 892744 1 - 0 ID=g146.t1.cds;Parent=g146.t1 ! chrI AUGUSTUS CDS 893415 893557 0.95 - 2 ID=g146.t1.cds;Parent=g146.t1 --- 5192,5195 ---- ! chrI AUGUSTUS intron 893558 893611 0.94 - . Parent=g146.t1 ! chrI AUGUSTUS CDS 892144 892155 0.92 - 0 ID=g146.t1.cds;Parent=g146.t1 ! chrI AUGUSTUS CDS 892634 892744 0.99 - 0 ID=g146.t1.cds;Parent=g146.t1 ! chrI AUGUSTUS CDS 893415 893557 0.94 - 2 ID=g146.t1.cds;Parent=g146.t1 *************** *** 5198 **** ! chrI AUGUSTUS five_prime_utr 893715 893744 0.46 - . Parent=g146.t1 --- 5198 ---- ! chrI AUGUSTUS five_prime_utr 893715 893744 0.44 - . Parent=g146.t1 *************** *** 5214,5215 **** ! chrI AUGUSTUS gene 895329 900854 0.4 - . ID=g147 ! chrI AUGUSTUS transcript 895329 900854 0.4 - . ID=g147.t1;Parent=g147 --- 5214,5215 ---- ! chrI AUGUSTUS gene 895329 900854 0.44 - . ID=g147 ! chrI AUGUSTUS transcript 895329 900854 0.44 - . ID=g147.t1;Parent=g147 *************** *** 5217 **** ! chrI AUGUSTUS three_prime_utr 895329 895562 0.98 - . Parent=g147.t1 --- 5217 ---- ! chrI AUGUSTUS three_prime_utr 895329 895562 0.95 - . Parent=g147.t1 *************** *** 5231 **** ! chrI AUGUSTUS five_prime_utr 900803 900854 0.41 - . Parent=g147.t1 --- 5231 ---- ! chrI AUGUSTUS five_prime_utr 900803 900854 0.47 - . Parent=g147.t1 *************** *** 5258,5259 **** ! chrI AUGUSTUS gene 901315 903007 0.23 + . ID=g148 ! chrI AUGUSTUS transcript 901315 903007 0.23 + . ID=g148.t1;Parent=g148 --- 5258,5259 ---- ! chrI AUGUSTUS gene 901315 903007 0.26 + . ID=g148 ! chrI AUGUSTUS transcript 901315 903007 0.26 + . ID=g148.t1;Parent=g148 *************** *** 5261 **** ! chrI AUGUSTUS five_prime_utr 901315 901341 0.49 + . Parent=g148.t1 --- 5261 ---- ! chrI AUGUSTUS five_prime_utr 901315 901341 0.59 + . Parent=g148.t1 *************** *** 5263,5264 **** ! chrI AUGUSTUS intron 901403 901443 0.92 + . Parent=g148.t1 ! chrI AUGUSTUS intron 901509 902155 0.92 + . Parent=g148.t1 --- 5263,5264 ---- ! chrI AUGUSTUS intron 901403 901443 0.96 + . Parent=g148.t1 ! chrI AUGUSTUS intron 901509 902155 0.96 + . Parent=g148.t1 *************** *** 5266 **** ! chrI AUGUSTUS intron 902463 902664 0.86 + . Parent=g148.t1 --- 5266 ---- ! chrI AUGUSTUS intron 902463 902664 0.82 + . Parent=g148.t1 *************** *** 5268,5269 **** ! chrI AUGUSTUS CDS 901342 901402 0.93 + 0 ID=g148.t1.cds;Parent=g148.t1 ! chrI AUGUSTUS CDS 901444 901508 0.92 + 2 ID=g148.t1.cds;Parent=g148.t1 --- 5268,5269 ---- ! chrI AUGUSTUS CDS 901342 901402 0.97 + 0 ID=g148.t1.cds;Parent=g148.t1 ! chrI AUGUSTUS CDS 901444 901508 0.96 + 2 ID=g148.t1.cds;Parent=g148.t1 *************** *** 5271 **** ! chrI AUGUSTUS CDS 902382 902462 0.86 + 0 ID=g148.t1.cds;Parent=g148.t1 --- 5271 ---- ! chrI AUGUSTUS CDS 902382 902462 0.82 + 0 ID=g148.t1.cds;Parent=g148.t1 *************** *** 5275 **** ! chrI AUGUSTUS three_prime_utr 902976 903007 0.5 + . Parent=g148.t1 --- 5275 ---- ! chrI AUGUSTUS three_prime_utr 902976 903007 0.54 + . Parent=g148.t1 *************** *** 5293,5294 **** ! chrI AUGUSTUS gene 903585 907748 0.29 + . ID=g149 ! chrI AUGUSTUS transcript 903585 907748 0.29 + . ID=g149.t1;Parent=g149 --- 5293,5294 ---- ! chrI AUGUSTUS gene 903585 907748 0.19 + . ID=g149 ! chrI AUGUSTUS transcript 903585 907748 0.19 + . ID=g149.t1;Parent=g149 *************** *** 5296 **** ! chrI AUGUSTUS five_prime_utr 903585 903635 0.73 + . Parent=g149.t1 --- 5296 ---- ! chrI AUGUSTUS five_prime_utr 903585 903635 0.64 + . Parent=g149.t1 *************** *** 5298 **** ! chrI AUGUSTUS intron 903652 903780 1 + . Parent=g149.t1 --- 5298 ---- ! chrI AUGUSTUS intron 903652 903780 0.98 + . Parent=g149.t1 *************** *** 5302,5303 **** ! chrI AUGUSTUS intron 905330 905406 0.99 + . Parent=g149.t1 ! chrI AUGUSTUS intron 905700 906018 0.88 + . Parent=g149.t1 --- 5302,5303 ---- ! chrI AUGUSTUS intron 905330 905406 1 + . Parent=g149.t1 ! chrI AUGUSTUS intron 905700 906018 0.91 + . Parent=g149.t1 *************** *** 5305,5307 **** ! chrI AUGUSTUS intron 906306 906368 0.83 + . Parent=g149.t1 ! chrI AUGUSTUS intron 906523 907278 0.99 + . Parent=g149.t1 ! chrI AUGUSTUS CDS 903636 903651 1 + 0 ID=g149.t1.cds;Parent=g149.t1 --- 5305,5307 ---- ! chrI AUGUSTUS intron 906306 906368 0.81 + . Parent=g149.t1 ! chrI AUGUSTUS intron 906523 907278 1 + . Parent=g149.t1 ! chrI AUGUSTUS CDS 903636 903651 0.98 + 0 ID=g149.t1.cds;Parent=g149.t1 *************** *** 5312,5313 **** ! chrI AUGUSTUS CDS 905407 905699 0.91 + 0 ID=g149.t1.cds;Parent=g149.t1 ! chrI AUGUSTUS CDS 906019 906079 0.96 + 1 ID=g149.t1.cds;Parent=g149.t1 --- 5312,5313 ---- ! chrI AUGUSTUS CDS 905407 905699 0.96 + 0 ID=g149.t1.cds;Parent=g149.t1 ! chrI AUGUSTUS CDS 906019 906079 0.95 + 1 ID=g149.t1.cds;Parent=g149.t1 *************** *** 5315 **** ! chrI AUGUSTUS CDS 906369 906522 0.82 + 1 ID=g149.t1.cds;Parent=g149.t1 --- 5315 ---- ! chrI AUGUSTUS CDS 906369 906522 0.81 + 1 ID=g149.t1.cds;Parent=g149.t1 *************** *** 5318 **** ! chrI AUGUSTUS three_prime_utr 907711 907748 0.51 + . Parent=g149.t1 --- 5318 ---- ! chrI AUGUSTUS three_prime_utr 907711 907748 0.53 + . Parent=g149.t1 *************** *** 5338,5339 **** ! chrI AUGUSTUS gene 907752 914354 0.08 - . ID=g150 ! chrI AUGUSTUS transcript 907752 914354 0.08 - . ID=g150.t1;Parent=g150 --- 5338,5339 ---- ! chrI AUGUSTUS gene 907752 914354 0.06 - . ID=g150 ! chrI AUGUSTUS transcript 907752 914354 0.06 - . ID=g150.t1;Parent=g150 *************** *** 5346 **** ! chrI AUGUSTUS intron 912225 913775 0.96 - . Parent=g150.t1 --- 5346 ---- ! chrI AUGUSTUS intron 912225 913775 0.92 - . Parent=g150.t1 *************** *** 5351 **** ! chrI AUGUSTUS CDS 913776 914012 0.32 - 0 ID=g150.t1.cds;Parent=g150.t1 --- 5351 ---- ! chrI AUGUSTUS CDS 913776 914012 0.35 - 0 ID=g150.t1.cds;Parent=g150.t1 *************** *** 5353 **** ! chrI AUGUSTUS five_prime_utr 914013 914354 0.24 - . Parent=g150.t1 --- 5353 ---- ! chrI AUGUSTUS five_prime_utr 914013 914354 0.19 - . Parent=g150.t1 *************** *** 5371,5372 **** ! chrI AUGUSTUS gene 915175 918861 0.38 + . ID=g151 ! chrI AUGUSTUS transcript 915175 918861 0.38 + . ID=g151.t1;Parent=g151 --- 5371,5372 ---- ! chrI AUGUSTUS gene 915175 918861 0.42 + . ID=g151 ! chrI AUGUSTUS transcript 915175 918861 0.42 + . ID=g151.t1;Parent=g151 *************** *** 5374 **** ! chrI AUGUSTUS five_prime_utr 915175 915236 0.82 + . Parent=g151.t1 --- 5374 ---- ! chrI AUGUSTUS five_prime_utr 915175 915236 0.9 + . Parent=g151.t1 *************** *** 5376,5377 **** ! chrI AUGUSTUS intron 915293 915600 0.98 + . Parent=g151.t1 ! chrI AUGUSTUS intron 915937 915983 0.98 + . Parent=g151.t1 --- 5376,5377 ---- ! chrI AUGUSTUS intron 915293 915600 1 + . Parent=g151.t1 ! chrI AUGUSTUS intron 915937 915983 1 + . Parent=g151.t1 *************** *** 5383,5384 **** ! chrI AUGUSTUS CDS 915237 915292 0.96 + 0 ID=g151.t1.cds;Parent=g151.t1 ! chrI AUGUSTUS CDS 915601 915936 0.98 + 1 ID=g151.t1.cds;Parent=g151.t1 --- 5383,5384 ---- ! chrI AUGUSTUS CDS 915237 915292 0.99 + 0 ID=g151.t1.cds;Parent=g151.t1 ! chrI AUGUSTUS CDS 915601 915936 1 + 1 ID=g151.t1.cds;Parent=g151.t1 *************** *** 5386 **** ! chrI AUGUSTUS CDS 916850 917006 0.89 + 1 ID=g151.t1.cds;Parent=g151.t1 --- 5386 ---- ! chrI AUGUSTUS CDS 916850 917006 0.9 + 1 ID=g151.t1.cds;Parent=g151.t1 *************** *** 5392 **** ! chrI AUGUSTUS three_prime_utr 918808 918861 0.51 + . Parent=g151.t1 --- 5392 ---- ! chrI AUGUSTUS three_prime_utr 918808 918861 0.52 + . Parent=g151.t1 *************** *** 5412,5413 **** ! chrI AUGUSTUS gene 918940 924764 0.09 - . ID=g152 ! chrI AUGUSTUS transcript 918940 924764 0.09 - . ID=g152.t1;Parent=g152 --- 5412,5413 ---- ! chrI AUGUSTUS gene 918940 924764 0.06 - . ID=g152 ! chrI AUGUSTUS transcript 918940 924764 0.06 - . ID=g152.t1;Parent=g152 *************** *** 5415 **** ! chrI AUGUSTUS three_prime_utr 918940 918964 0.21 - . Parent=g152.t1 --- 5415 ---- ! chrI AUGUSTUS three_prime_utr 918940 918964 0.26 - . Parent=g152.t1 *************** *** 5418 **** ! chrI AUGUSTUS intron 919721 921373 0.47 - . Parent=g152.t1 --- 5418 ---- ! chrI AUGUSTUS intron 919721 921373 0.5 - . Parent=g152.t1 *************** *** 5420 **** ! chrI AUGUSTUS intron 923169 923817 0.99 - . Parent=g152.t1 --- 5420 ---- ! chrI AUGUSTUS intron 923169 923817 0.95 - . Parent=g152.t1 *************** *** 5423,5424 **** ! chrI AUGUSTUS CDS 919516 919720 0.35 - 1 ID=g152.t1.cds;Parent=g152.t1 ! chrI AUGUSTUS CDS 921374 921951 0.57 - 0 ID=g152.t1.cds;Parent=g152.t1 --- 5423,5424 ---- ! chrI AUGUSTUS CDS 919516 919720 0.39 - 1 ID=g152.t1.cds;Parent=g152.t1 ! chrI AUGUSTUS CDS 921374 921951 0.71 - 0 ID=g152.t1.cds;Parent=g152.t1 *************** *** 5426 **** ! chrI AUGUSTUS CDS 923818 924537 0.99 - 0 ID=g152.t1.cds;Parent=g152.t1 --- 5426 ---- ! chrI AUGUSTUS CDS 923818 924537 0.95 - 0 ID=g152.t1.cds;Parent=g152.t1 *************** *** 5429 **** ! chrI AUGUSTUS five_prime_utr 924696 924764 0.26 - . Parent=g152.t1 --- 5429 ---- ! chrI AUGUSTUS five_prime_utr 924696 924764 0.19 - . Parent=g152.t1 *************** *** 5451,5452 **** ! chrI AUGUSTUS gene 925125 929719 0.1 + . ID=g153 ! chrI AUGUSTUS transcript 925125 929719 0.1 + . ID=g153.t1;Parent=g153 --- 5451,5452 ---- ! chrI AUGUSTUS gene 925125 929719 0.11 + . ID=g153 ! chrI AUGUSTUS transcript 925125 929719 0.11 + . ID=g153.t1;Parent=g153 *************** *** 5454 **** ! chrI AUGUSTUS five_prime_utr 925125 925245 0.84 + . Parent=g153.t1 --- 5454 ---- ! chrI AUGUSTUS five_prime_utr 925125 925245 0.83 + . Parent=g153.t1 *************** *** 5457,5460 **** ! chrI AUGUSTUS intron 925664 925714 0.53 + . Parent=g153.t1 ! chrI AUGUSTUS intron 925946 926559 0.55 + . Parent=g153.t1 ! chrI AUGUSTUS intron 926779 926825 0.99 + . Parent=g153.t1 ! chrI AUGUSTUS intron 926914 926956 1 + . Parent=g153.t1 --- 5457,5460 ---- ! chrI AUGUSTUS intron 925664 925714 0.64 + . Parent=g153.t1 ! chrI AUGUSTUS intron 925946 926559 0.66 + . Parent=g153.t1 ! chrI AUGUSTUS intron 926779 926825 0.98 + . Parent=g153.t1 ! chrI AUGUSTUS intron 926914 926956 0.99 + . Parent=g153.t1 *************** *** 5462,5463 **** ! chrI AUGUSTUS intron 927942 928395 0.92 + . Parent=g153.t1 ! chrI AUGUSTUS intron 928453 928509 0.99 + . Parent=g153.t1 --- 5462,5463 ---- ! chrI AUGUSTUS intron 927942 928395 0.91 + . Parent=g153.t1 ! chrI AUGUSTUS intron 928453 928509 1 + . Parent=g153.t1 *************** *** 5468 **** ! chrI AUGUSTUS CDS 925715 925945 0.52 + 0 ID=g153.t1.cds;Parent=g153.t1 --- 5468 ---- ! chrI AUGUSTUS CDS 925715 925945 0.64 + 0 ID=g153.t1.cds;Parent=g153.t1 *************** *** 5470,5472 **** ! chrI AUGUSTUS CDS 926826 926913 1 + 0 ID=g153.t1.cds;Parent=g153.t1 ! chrI AUGUSTUS CDS 926957 927026 1 + 2 ID=g153.t1.cds;Parent=g153.t1 ! chrI AUGUSTUS CDS 927682 927941 0.93 + 1 ID=g153.t1.cds;Parent=g153.t1 --- 5470,5472 ---- ! chrI AUGUSTUS CDS 926826 926913 0.99 + 0 ID=g153.t1.cds;Parent=g153.t1 ! chrI AUGUSTUS CDS 926957 927026 0.99 + 2 ID=g153.t1.cds;Parent=g153.t1 ! chrI AUGUSTUS CDS 927682 927941 0.91 + 1 ID=g153.t1.cds;Parent=g153.t1 *************** *** 5478 **** ! chrI AUGUSTUS three_prime_utr 929353 929719 0.31 + . Parent=g153.t1 --- 5478 ---- ! chrI AUGUSTUS three_prime_utr 929353 929719 0.29 + . Parent=g153.t1 *************** *** 5500,5501 **** ! chrI AUGUSTUS gene 929805 931362 0.26 + . ID=g154 ! chrI AUGUSTUS transcript 929805 931362 0.26 + . ID=g154.t1;Parent=g154 --- 5500,5501 ---- ! chrI AUGUSTUS gene 929805 931362 0.27 + . ID=g154 ! chrI AUGUSTUS transcript 929805 931362 0.27 + . ID=g154.t1;Parent=g154 *************** *** 5503 **** ! chrI AUGUSTUS five_prime_utr 929805 929840 0.53 + . Parent=g154.t1 --- 5503 ---- ! chrI AUGUSTUS five_prime_utr 929805 929840 0.49 + . Parent=g154.t1 *************** *** 5506,5509 **** ! chrI AUGUSTUS intron 930090 930174 0.84 + . Parent=g154.t1 ! chrI AUGUSTUS intron 930368 931223 0.84 + . Parent=g154.t1 ! chrI AUGUSTUS CDS 929841 929885 0.88 + 0 ID=g154.t1.cds;Parent=g154.t1 ! chrI AUGUSTUS CDS 929947 930089 0.84 + 0 ID=g154.t1.cds;Parent=g154.t1 --- 5506,5509 ---- ! chrI AUGUSTUS intron 930090 930174 0.83 + . Parent=g154.t1 ! chrI AUGUSTUS intron 930368 931223 0.85 + . Parent=g154.t1 ! chrI AUGUSTUS CDS 929841 929885 0.78 + 0 ID=g154.t1.cds;Parent=g154.t1 ! chrI AUGUSTUS CDS 929947 930089 0.83 + 0 ID=g154.t1.cds;Parent=g154.t1 *************** *** 5511 **** ! chrI AUGUSTUS CDS 931224 931256 0.84 + 0 ID=g154.t1.cds;Parent=g154.t1 --- 5511 ---- ! chrI AUGUSTUS CDS 931224 931256 0.85 + 0 ID=g154.t1.cds;Parent=g154.t1 *************** *** 5513 **** ! chrI AUGUSTUS three_prime_utr 931257 931362 0.65 + . Parent=g154.t1 --- 5513 ---- ! chrI AUGUSTUS three_prime_utr 931257 931362 0.6 + . Parent=g154.t1 *************** *** 5529,5530 **** ! chrI AUGUSTUS gene 931425 939478 0.24 + . ID=g155 ! chrI AUGUSTUS transcript 931425 939478 0.24 + . ID=g155.t1;Parent=g155 --- 5529,5530 ---- ! chrI AUGUSTUS gene 931425 939478 0.2 + . ID=g155 ! chrI AUGUSTUS transcript 931425 939478 0.2 + . ID=g155.t1;Parent=g155 *************** *** 5532 **** ! chrI AUGUSTUS five_prime_utr 931425 931461 0.59 + . Parent=g155.t1 --- 5532 ---- ! chrI AUGUSTUS five_prime_utr 931425 931461 0.54 + . Parent=g155.t1 *************** *** 5541,5542 **** ! chrI AUGUSTUS intron 937920 938442 0.97 + . Parent=g155.t1 ! chrI AUGUSTUS intron 938678 939447 0.43 + . Parent=g155.t1 --- 5541,5542 ---- ! chrI AUGUSTUS intron 937920 938442 0.94 + . Parent=g155.t1 ! chrI AUGUSTUS intron 938678 939447 0.39 + . Parent=g155.t1 *************** *** 5550,5552 **** ! chrI AUGUSTUS CDS 937759 937919 0.97 + 0 ID=g155.t1.cds;Parent=g155.t1 ! chrI AUGUSTUS CDS 938443 938677 0.43 + 1 ID=g155.t1.cds;Parent=g155.t1 ! chrI AUGUSTUS CDS 939448 939453 0.62 + 0 ID=g155.t1.cds;Parent=g155.t1 --- 5550,5552 ---- ! chrI AUGUSTUS CDS 937759 937919 0.94 + 0 ID=g155.t1.cds;Parent=g155.t1 ! chrI AUGUSTUS CDS 938443 938677 0.37 + 1 ID=g155.t1.cds;Parent=g155.t1 ! chrI AUGUSTUS CDS 939448 939453 0.64 + 0 ID=g155.t1.cds;Parent=g155.t1 *************** *** 5554 **** ! chrI AUGUSTUS three_prime_utr 939454 939478 0.58 + . Parent=g155.t1 --- 5554 ---- ! chrI AUGUSTUS three_prime_utr 939454 939478 0.63 + . Parent=g155.t1 *************** *** 5574,5575 **** ! chrI AUGUSTUS gene 939485 940284 0.21 - . ID=g156 ! chrI AUGUSTUS transcript 939485 940284 0.21 - . ID=g156.t1;Parent=g156 --- 5574,5575 ---- ! chrI AUGUSTUS gene 939485 940284 0.22 - . ID=g156 ! chrI AUGUSTUS transcript 939485 940284 0.22 - . ID=g156.t1;Parent=g156 *************** *** 5577 **** ! chrI AUGUSTUS three_prime_utr 939485 939519 0.68 - . Parent=g156.t1 --- 5577 ---- ! chrI AUGUSTUS three_prime_utr 939485 939519 0.74 - . Parent=g156.t1 *************** *** 5579,5581 **** ! chrI AUGUSTUS intron 939745 940164 0.95 - . Parent=g156.t1 ! chrI AUGUSTUS CDS 939520 939744 0.99 - 0 ID=g156.t1.cds;Parent=g156.t1 ! chrI AUGUSTUS CDS 940165 940236 0.96 - 0 ID=g156.t1.cds;Parent=g156.t1 --- 5579,5581 ---- ! chrI AUGUSTUS intron 939745 940164 0.99 - . Parent=g156.t1 ! chrI AUGUSTUS CDS 939520 939744 1 - 0 ID=g156.t1.cds;Parent=g156.t1 ! chrI AUGUSTUS CDS 940165 940236 0.99 - 0 ID=g156.t1.cds;Parent=g156.t1 *************** *** 5583 **** ! chrI AUGUSTUS five_prime_utr 940237 940284 0.35 - . Parent=g156.t1 --- 5583 ---- ! chrI AUGUSTUS five_prime_utr 940237 940284 0.32 - . Parent=g156.t1 *************** *** 5598,5599 **** ! chrI AUGUSTUS gene 940906 941734 0.29 - . ID=g157 ! chrI AUGUSTUS transcript 940906 941734 0.29 - . ID=g157.t1;Parent=g157 --- 5598,5599 ---- ! chrI AUGUSTUS gene 940906 941734 0.37 - . ID=g157 ! chrI AUGUSTUS transcript 940906 941734 0.37 - . ID=g157.t1;Parent=g157 *************** *** 5601 **** ! chrI AUGUSTUS three_prime_utr 940906 940969 0.84 - . Parent=g157.t1 --- 5601 ---- ! chrI AUGUSTUS three_prime_utr 940906 940969 0.83 - . Parent=g157.t1 *************** *** 5605 **** ! chrI AUGUSTUS CDS 941485 941673 0.97 - 0 ID=g157.t1.cds;Parent=g157.t1 --- 5605 ---- ! chrI AUGUSTUS CDS 941485 941673 0.99 - 0 ID=g157.t1.cds;Parent=g157.t1 *************** *** 5607 **** ! chrI AUGUSTUS five_prime_utr 941674 941734 0.35 - . Parent=g157.t1 --- 5607 ---- ! chrI AUGUSTUS five_prime_utr 941674 941734 0.45 - . Parent=g157.t1 *************** *** 5623,5624 **** ! chrI AUGUSTUS gene 942875 947107 0.07 + . ID=g158 ! chrI AUGUSTUS transcript 942875 947107 0.07 + . ID=g158.t1;Parent=g158 --- 5623,5624 ---- ! chrI AUGUSTUS gene 942875 947107 0.08 + . ID=g158 ! chrI AUGUSTUS transcript 942875 947107 0.08 + . ID=g158.t1;Parent=g158 *************** *** 5626 **** ! chrI AUGUSTUS five_prime_utr 942875 942902 0.29 + . Parent=g158.t1 --- 5626 ---- ! chrI AUGUSTUS five_prime_utr 942875 942902 0.25 + . Parent=g158.t1 *************** *** 5628,5629 **** ! chrI AUGUSTUS intron 943022 943077 0.83 + . Parent=g158.t1 ! chrI AUGUSTUS intron 943205 944076 1 + . Parent=g158.t1 --- 5628,5629 ---- ! chrI AUGUSTUS intron 943022 943077 0.78 + . Parent=g158.t1 ! chrI AUGUSTUS intron 943205 944076 0.98 + . Parent=g158.t1 *************** *** 5632,5635 **** ! chrI AUGUSTUS CDS 942903 943021 0.78 + 0 ID=g158.t1.cds;Parent=g158.t1 ! chrI AUGUSTUS CDS 943078 943204 1 + 1 ID=g158.t1.cds;Parent=g158.t1 ! chrI AUGUSTUS CDS 944077 944223 1 + 0 ID=g158.t1.cds;Parent=g158.t1 ! chrI AUGUSTUS CDS 944275 944382 0.96 + 0 ID=g158.t1.cds;Parent=g158.t1 --- 5632,5635 ---- ! chrI AUGUSTUS CDS 942903 943021 0.6 + 0 ID=g158.t1.cds;Parent=g158.t1 ! chrI AUGUSTUS CDS 943078 943204 0.98 + 1 ID=g158.t1.cds;Parent=g158.t1 ! chrI AUGUSTUS CDS 944077 944223 0.98 + 0 ID=g158.t1.cds;Parent=g158.t1 ! chrI AUGUSTUS CDS 944275 944382 0.95 + 0 ID=g158.t1.cds;Parent=g158.t1 *************** *** 5638 **** ! chrI AUGUSTUS three_prime_utr 946939 947107 0.36 + . Parent=g158.t1 --- 5638 ---- ! chrI AUGUSTUS three_prime_utr 946939 947107 0.44 + . Parent=g158.t1 *************** *** 5656,5657 **** ! chrI AUGUSTUS gene 948405 948752 0.9 + . ID=g159 ! chrI AUGUSTUS transcript 948405 948752 0.9 + . ID=g159.t1;Parent=g159 --- 5656,5657 ---- ! chrI AUGUSTUS gene 948405 948752 0.89 + . ID=g159 ! chrI AUGUSTUS transcript 948405 948752 0.89 + . ID=g159.t1;Parent=g159 *************** *** 5663 **** ! chrI AUGUSTUS three_prime_utr 948694 948752 1 + . Parent=g159.t1 --- 5663 ---- ! chrI AUGUSTUS three_prime_utr 948694 948752 0.99 + . Parent=g159.t1 *************** *** 5678,5679 **** ! chrI AUGUSTUS gene 949597 957954 0.17 - . ID=g160 ! chrI AUGUSTUS transcript 949597 957954 0.17 - . ID=g160.t1;Parent=g160 --- 5678,5679 ---- ! chrI AUGUSTUS gene 949597 957954 0.21 - . ID=g160 ! chrI AUGUSTUS transcript 949597 957954 0.21 - . ID=g160.t1;Parent=g160 *************** *** 5681 **** ! chrI AUGUSTUS three_prime_utr 949597 949975 1 - . Parent=g160.t1 --- 5681 ---- ! chrI AUGUSTUS three_prime_utr 949597 949975 0.99 - . Parent=g160.t1 *************** *** 5687 **** ! chrI AUGUSTUS intron 951771 951882 0.99 - . Parent=g160.t1 --- 5687 ---- ! chrI AUGUSTUS intron 951771 951882 0.96 - . Parent=g160.t1 *************** *** 5689 **** ! chrI AUGUSTUS intron 952349 953079 1 - . Parent=g160.t1 --- 5689 ---- ! chrI AUGUSTUS intron 952349 953079 0.99 - . Parent=g160.t1 *************** *** 5691 **** ! chrI AUGUSTUS intron 954945 955331 0.84 - . Parent=g160.t1 --- 5691 ---- ! chrI AUGUSTUS intron 954945 955331 0.86 - . Parent=g160.t1 *************** *** 5694 **** ! chrI AUGUSTUS intron 956974 957792 0.99 - . Parent=g160.t1 --- 5694 ---- ! chrI AUGUSTUS intron 956974 957792 0.95 - . Parent=g160.t1 *************** *** 5699 **** ! chrI AUGUSTUS CDS 951673 951770 0.99 - 2 ID=g160.t1.cds;Parent=g160.t1 --- 5699 ---- ! chrI AUGUSTUS CDS 951673 951770 0.96 - 2 ID=g160.t1.cds;Parent=g160.t1 *************** *** 5702,5703 **** ! chrI AUGUSTUS CDS 953080 953972 0.93 - 1 ID=g160.t1.cds;Parent=g160.t1 ! chrI AUGUSTUS CDS 954834 954944 0.83 - 1 ID=g160.t1.cds;Parent=g160.t1 --- 5702,5703 ---- ! chrI AUGUSTUS CDS 953080 953972 0.92 - 1 ID=g160.t1.cds;Parent=g160.t1 ! chrI AUGUSTUS CDS 954834 954944 0.85 - 1 ID=g160.t1.cds;Parent=g160.t1 *************** *** 5709 **** ! chrI AUGUSTUS five_prime_utr 957869 957954 0.24 - . Parent=g160.t1 --- 5709 ---- ! chrI AUGUSTUS five_prime_utr 957869 957954 0.29 - . Parent=g160.t1 *************** *** 5734,5735 **** ! chrI AUGUSTUS gene 981656 995734 0.01 - . ID=g161 ! chrI AUGUSTUS transcript 981656 995734 0.01 - . ID=g161.t1;Parent=g161 --- 5734,5735 ---- ! chrI AUGUSTUS gene 981656 995734 0.03 - . ID=g161 ! chrI AUGUSTUS transcript 981656 995734 0.03 - . ID=g161.t1;Parent=g161 *************** *** 5737 **** ! chrI AUGUSTUS three_prime_utr 981656 981735 0.19 - . Parent=g161.t1 --- 5737 ---- ! chrI AUGUSTUS three_prime_utr 981656 981735 0.18 - . Parent=g161.t1 *************** *** 5740,5741 **** ! chrI AUGUSTUS intron 982116 983000 0.98 - . Parent=g161.t1 ! chrI AUGUSTUS intron 983078 983371 0.65 - . Parent=g161.t1 --- 5740,5741 ---- ! chrI AUGUSTUS intron 982116 983000 0.99 - . Parent=g161.t1 ! chrI AUGUSTUS intron 983078 983371 0.58 - . Parent=g161.t1 *************** *** 5743,5748 **** ! chrI AUGUSTUS intron 984185 984766 0.88 - . Parent=g161.t1 ! chrI AUGUSTUS intron 984981 986240 0.96 - . Parent=g161.t1 ! chrI AUGUSTUS intron 986384 986992 0.99 - . Parent=g161.t1 ! chrI AUGUSTUS intron 987064 987130 0.91 - . Parent=g161.t1 ! chrI AUGUSTUS intron 987196 987241 0.93 - . Parent=g161.t1 ! chrI AUGUSTUS intron 987381 988234 0.91 - . Parent=g161.t1 --- 5743,5748 ---- ! chrI AUGUSTUS intron 984185 984766 0.8 - . Parent=g161.t1 ! chrI AUGUSTUS intron 984981 986240 0.92 - . Parent=g161.t1 ! chrI AUGUSTUS intron 986384 986992 1 - . Parent=g161.t1 ! chrI AUGUSTUS intron 987064 987130 0.94 - . Parent=g161.t1 ! chrI AUGUSTUS intron 987196 987241 0.97 - . Parent=g161.t1 ! chrI AUGUSTUS intron 987381 988234 0.9 - . Parent=g161.t1 *************** *** 5750,5751 **** ! chrI AUGUSTUS intron 988666 988708 0.96 - . Parent=g161.t1 ! chrI AUGUSTUS intron 988820 990663 0.95 - . Parent=g161.t1 --- 5750,5751 ---- ! chrI AUGUSTUS intron 988666 988708 0.99 - . Parent=g161.t1 ! chrI AUGUSTUS intron 988820 990663 0.99 - . Parent=g161.t1 *************** *** 5754 **** ! chrI AUGUSTUS intron 994350 995245 1 - . Parent=g161.t1 --- 5754 ---- ! chrI AUGUSTUS intron 994350 995245 0.99 - . Parent=g161.t1 *************** *** 5756 **** ! chrI AUGUSTUS intron 995545 995592 0.7 - . Parent=g161.t1 --- 5756 ---- ! chrI AUGUSTUS intron 995545 995592 0.74 - . Parent=g161.t1 *************** *** 5759,5760 **** ! chrI AUGUSTUS CDS 983001 983077 0.8 - 1 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 983372 983532 0.6 - 0 ID=g161.t1.cds;Parent=g161.t1 --- 5759,5760 ---- ! chrI AUGUSTUS CDS 983001 983077 0.79 - 1 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 983372 983532 0.53 - 0 ID=g161.t1.cds;Parent=g161.t1 *************** *** 5762,5766 **** ! chrI AUGUSTUS CDS 984767 984980 0.88 - 2 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 986241 986383 0.96 - 1 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 986993 987063 0.99 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 987131 987195 0.91 - 2 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 987242 987380 0.88 - 0 ID=g161.t1.cds;Parent=g161.t1 --- 5762,5766 ---- ! chrI AUGUSTUS CDS 984767 984980 0.78 - 2 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 986241 986383 0.94 - 1 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 986993 987063 1 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 987131 987195 0.94 - 2 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 987242 987380 0.9 - 0 ID=g161.t1.cds;Parent=g161.t1 *************** *** 5769 **** ! chrI AUGUSTUS CDS 988709 988819 0.95 - 1 ID=g161.t1.cds;Parent=g161.t1 --- 5769 ---- ! chrI AUGUSTUS CDS 988709 988819 0.99 - 1 ID=g161.t1.cds;Parent=g161.t1 *************** *** 5772,5775 **** ! chrI AUGUSTUS CDS 993912 994349 0.99 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 995246 995419 1 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 995482 995544 0.71 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 995593 995700 0.61 - 0 ID=g161.t1.cds;Parent=g161.t1 --- 5772,5775 ---- ! chrI AUGUSTUS CDS 993912 994349 1 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 995246 995419 0.99 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 995482 995544 0.74 - 0 ID=g161.t1.cds;Parent=g161.t1 ! chrI AUGUSTUS CDS 995593 995700 0.55 - 0 ID=g161.t1.cds;Parent=g161.t1 *************** *** 5777 **** ! chrI AUGUSTUS five_prime_utr 995701 995734 0.34 - . Parent=g161.t1 --- 5777 ---- ! chrI AUGUSTUS five_prime_utr 995701 995734 0.35 - . Parent=g161.t1 *************** *** 5802,5803 **** ! chrI AUGUSTUS gene 996325 999559 0.22 + . ID=g162 ! chrI AUGUSTUS transcript 996325 999559 0.22 + . ID=g162.t1;Parent=g162 --- 5802,5803 ---- ! chrI AUGUSTUS gene 996325 999559 0.29 + . ID=g162 ! chrI AUGUSTUS transcript 996325 999559 0.29 + . ID=g162.t1;Parent=g162 *************** *** 5805 **** ! chrI AUGUSTUS five_prime_utr 996325 996510 0.34 + . Parent=g162.t1 --- 5805 ---- ! chrI AUGUSTUS five_prime_utr 996325 996510 0.38 + . Parent=g162.t1 *************** *** 5813 **** ! chrI AUGUSTUS CDS 999166 999520 0.97 + 1 ID=g162.t1.cds;Parent=g162.t1 --- 5813 ---- ! chrI AUGUSTUS CDS 999166 999520 0.99 + 1 ID=g162.t1.cds;Parent=g162.t1 *************** *** 5815 **** ! chrI AUGUSTUS three_prime_utr 999521 999559 0.81 + . Parent=g162.t1 --- 5815 ---- ! chrI AUGUSTUS three_prime_utr 999521 999559 0.85 + . Parent=g162.t1 ====================================================================== FAIL: test_cgp (__main__.TestAugustus) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 562, in test_cgp self.assertEqualFolders(reffolder, resfolder, File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders self.assertEqual(diff, '', diff) AssertionError: '*** ../../tests/examples/expected_results[5307 chars]";\n' != '' Diff is 5122 characters long. Set self.maxDiff to None to see it. : *** ../../tests/examples/expected_results/test_cgp/output.txt --- ../../tests/examples/results/test_cgp/output.txt *************** *** 29,32 **** ! Found 2566 ECs on species hg19 ! Found 2217 ECs on species mm9 ! Found 2643 ECs on species bosTau4 ! Found 2088 ECs on species galGal3 --- 29,32 ---- ! Found 2654 ECs on species hg19 ! Found 2289 ECs on species mm9 ! Found 2753 ECs on species bosTau4 ! Found 2218 ECs on species galGal3 *************** *** 34 **** ! Found 141 ortho exons --- 34 ---- ! Found 150 ortho exons *************** *** 49,54 **** ! 0 0 0 96.42318205 137.9112869 4 ! 0 1 10.37202622 127.1016117 168.5897175 34 ! 0 2 1.220238405 127.1016026 149.0658933 16 ! 0 3 1.372767597 127.1016041 127.1016136 16 ! 0 4 1.192093046e-07 127.1016017 127.1016093 16 ! dual decomposition reduced initial duality gap of 30.67842727 to 0 (to 0%) --- 49,54 ---- ! 0 0 0 87.96290735 129.4510122 4 ! 0 1 10.37202622 117.5470262 159.035132 34 ! 0 2 1.220238405 117.5470134 139.511304 16 ! 0 3 1.372767359 117.5470234 117.5470367 16 ! 0 4 6.556511067e-07 117.5470122 117.547015 16 ! dual decomposition reduced initial duality gap of 29.58410769 to 0 (to 0%) *** ../../tests/examples/expected_results/test_cgp/mm9.cgp.filtered.gff --- ../../tests/examples/results/test_cgp/mm9.cgp.filtered.gff *************** *** 8 **** ! chr16 AUGUSTUS CDS 4520 4784 1 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 8 ---- ! chr16 AUGUSTUS CDS 4520 4784 0.98 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 10,14 **** ! chr16 AUGUSTUS CDS 6683 6841 0.75 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 8753 8802 0.78 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 10154 10302 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 13728 14019 0.24 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 22188 22369 1 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 10,14 ---- ! chr16 AUGUSTUS CDS 6683 6841 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 8753 8802 0.74 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 10154 10302 0.91 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 13728 14019 0.23 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 22188 22369 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; *** ../../tests/examples/expected_results/test_cgp/hg19.cgp.filtered.gff --- ../../tests/examples/results/test_cgp/hg19.cgp.filtered.gff *************** *** 7 **** ! chr21 AUGUSTUS CDS 2032 3191 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 7 ---- ! chr21 AUGUSTUS CDS 2032 3191 1 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 10,12 **** ! chr21 AUGUSTUS CDS 7807 7965 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 10348 10397 1 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 12291 12439 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 10,12 ---- ! chr21 AUGUSTUS CDS 7807 7965 0.74 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 10348 10397 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 12291 12439 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; *** ../../tests/examples/expected_results/test_cgp/galGal3.cgp.filtered.gff --- ../../tests/examples/results/test_cgp/galGal3.cgp.filtered.gff *************** *** 9,10 **** ! chr1 AUGUSTUS CDS 3682 3788 1 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4747 4905 0.49 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 9,10 ---- ! chr1 AUGUSTUS CDS 3682 3788 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4747 4905 0.43 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 12 **** ! chr1 AUGUSTUS CDS 6805 6953 0.76 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 12 ---- ! chr1 AUGUSTUS CDS 6805 6953 0.75 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 14 **** ! chr1 AUGUSTUS CDS 20606 20787 0.78 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 14 ---- ! chr1 AUGUSTUS CDS 20606 20787 0.68 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 31 **** ! chr1 AUGUSTUS CDS 20923 21195 0.88 + 0 transcript_id "g2.t1"; gene_id "g2"; --- 31 ---- ! chr1 AUGUSTUS CDS 20923 21195 0.83 + 0 transcript_id "g2.t1"; gene_id "g2"; *** ../../tests/examples/expected_results/test_cgp/bosTau4.cgp.filtered.gff --- ../../tests/examples/results/test_cgp/bosTau4.cgp.filtered.gff *************** *** 7 **** ! chr1 AUGUSTUS CDS 1935 3094 0.92 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 7 ---- ! chr1 AUGUSTUS CDS 1935 3094 0.96 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 13,14 **** ! chr1 AUGUSTUS CDS 16603 16894 0.96 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 26587 26768 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 13,14 ---- ! chr1 AUGUSTUS CDS 16603 16894 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 26587 26768 0.97 - 0 transcript_id "g1.t1"; gene_id "g1"; ====================================================================== FAIL: test_cgp_sqlite (__main__.TestAugustus) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 566, in test_cgp_sqlite self.cgp_with_db_preparation(False, False) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 656, in cgp_with_db_preparation self.cgp_with_db_execution(resfolder, reffolder, *args) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 617, in cgp_with_db_execution self.assertEqualFolders(reffolder, resfolder, File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders self.assertEqual(diff, '', diff) AssertionError: '*** ../../tests/examples/expected_results[5421 chars]";\n' != '' Diff is 5236 characters long. Set self.maxDiff to None to see it. : *** ../../tests/examples/expected_results/test_cgp_with_db/aug.out --- ../../tests/examples/results/test_cgp_with_db/aug.out *************** *** 25,28 **** ! Found 2566 ECs on species hg19 ! Found 2217 ECs on species mm9 ! Found 2643 ECs on species bosTau4 ! Found 2088 ECs on species galGal3 --- 25,28 ---- ! Found 2654 ECs on species hg19 ! Found 2289 ECs on species mm9 ! Found 2753 ECs on species bosTau4 ! Found 2218 ECs on species galGal3 *************** *** 30 **** ! Found 141 ortho exons --- 30 ---- ! Found 150 ortho exons *************** *** 45,50 **** ! 0 0 0 96.42318205 137.9112869 4 ! 0 1 10.37202622 127.1016117 168.5897175 34 ! 0 2 1.220238405 127.1016026 149.0658933 16 ! 0 3 1.372767597 127.1016041 127.1016136 16 ! 0 4 1.192093046e-07 127.1016017 127.1016093 16 ! dual decomposition reduced initial duality gap of 30.67842727 to 0 (to 0%) --- 45,50 ---- ! 0 0 0 87.96290735 129.4510122 4 ! 0 1 10.37202622 117.5470262 159.035132 34 ! 0 2 1.220238405 117.5470134 139.511304 16 ! 0 3 1.372767359 117.5470234 117.5470367 16 ! 0 4 6.556511067e-07 117.5470122 117.547015 16 ! dual decomposition reduced initial duality gap of 29.58410769 to 0 (to 0%) *** ../../tests/examples/expected_results/test_cgp_with_db/pred/mm9.cgp.filtered.gff --- ../../tests/examples/results/test_cgp_with_db/pred/mm9.cgp.filtered.gff *************** *** 8 **** ! chr16 AUGUSTUS CDS 4520 4784 1 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 8 ---- ! chr16 AUGUSTUS CDS 4520 4784 0.98 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 10,14 **** ! chr16 AUGUSTUS CDS 6683 6841 0.75 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 8753 8802 0.78 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 10154 10302 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 13728 14019 0.24 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 22188 22369 1 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 10,14 ---- ! chr16 AUGUSTUS CDS 6683 6841 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 8753 8802 0.74 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 10154 10302 0.91 - 0 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 13728 14019 0.23 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr16 AUGUSTUS CDS 22188 22369 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; *** ../../tests/examples/expected_results/test_cgp_with_db/pred/hg19.cgp.filtered.gff --- ../../tests/examples/results/test_cgp_with_db/pred/hg19.cgp.filtered.gff *************** *** 7 **** ! chr21 AUGUSTUS CDS 2032 3191 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 7 ---- ! chr21 AUGUSTUS CDS 2032 3191 1 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 10,12 **** ! chr21 AUGUSTUS CDS 7807 7965 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 10348 10397 1 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 12291 12439 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 10,12 ---- ! chr21 AUGUSTUS CDS 7807 7965 0.74 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 10348 10397 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr21 AUGUSTUS CDS 12291 12439 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; *** ../../tests/examples/expected_results/test_cgp_with_db/pred/galGal3.cgp.filtered.gff --- ../../tests/examples/results/test_cgp_with_db/pred/galGal3.cgp.filtered.gff *************** *** 9,10 **** ! chr1 AUGUSTUS CDS 3682 3788 1 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4747 4905 0.49 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 9,10 ---- ! chr1 AUGUSTUS CDS 3682 3788 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4747 4905 0.43 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 12 **** ! chr1 AUGUSTUS CDS 6805 6953 0.76 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 12 ---- ! chr1 AUGUSTUS CDS 6805 6953 0.75 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 14 **** ! chr1 AUGUSTUS CDS 20606 20787 0.78 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 14 ---- ! chr1 AUGUSTUS CDS 20606 20787 0.68 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 39 **** ! chr1 AUGUSTUS CDS 20923 21195 0.88 + 0 transcript_id "g2.t1"; gene_id "g2"; --- 39 ---- ! chr1 AUGUSTUS CDS 20923 21195 0.83 + 0 transcript_id "g2.t1"; gene_id "g2"; *** ../../tests/examples/expected_results/test_cgp_with_db/pred/bosTau4.cgp.filtered.gff --- ../../tests/examples/results/test_cgp_with_db/pred/bosTau4.cgp.filtered.gff *************** *** 7 **** ! chr1 AUGUSTUS CDS 1935 3094 0.92 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 7 ---- ! chr1 AUGUSTUS CDS 1935 3094 0.96 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 13,14 **** ! chr1 AUGUSTUS CDS 16603 16894 0.96 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 26587 26768 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 13,14 ---- ! chr1 AUGUSTUS CDS 16603 16894 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 26587 26768 0.97 - 0 transcript_id "g1.t1"; gene_id "g1"; ====================================================================== FAIL: test_cgp_sqlite_hints (__main__.TestAugustus) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 569, in test_cgp_sqlite_hints self.cgp_with_db_preparation(True, False) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 656, in cgp_with_db_preparation self.cgp_with_db_execution(resfolder, reffolder, *args) File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 617, in cgp_with_db_execution self.assertEqualFolders(reffolder, resfolder, File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders self.assertEqual(diff, '', diff) AssertionError: '*** ../../tests/examples/expected_results[4451 chars]";\n' != '' Diff is 4306 characters long. Set self.maxDiff to None to see it. : *** ../../tests/examples/expected_results/test_cgp_with_db_hints/aug.out --- ../../tests/examples/results/test_cgp_with_db_hints/aug.out *************** *** 29,32 **** ! Found 2546 ECs on species hg19 ! Found 2196 ECs on species mm9 ! Found 2638 ECs on species bosTau4 ! Found 2085 ECs on species galGal3 --- 29,32 ---- ! Found 2637 ECs on species hg19 ! Found 2266 ECs on species mm9 ! Found 2746 ECs on species bosTau4 ! Found 2213 ECs on species galGal3 *************** *** 34 **** ! Found 137 ortho exons --- 34 ---- ! Found 144 ortho exons *************** *** 49,60 **** ! 0 0 0 18750.59819 18760.55449 1 ! 0 1 9.956299896 18756.63172 18766.58802 30 ! 0 2 0.3318766594 18756.63063 18765.25942 4 ! 0 3 2.156924859 18756.63129 18756.63239 4 ! 0 4 0.0001665502787 18756.63147 18756.6319 4 ! 0 5 4.447996616e-05 18756.63152 18756.63177 4 ! 0 6 1.110136509e-05 18756.63152 18756.63172 4 ! 0 7 6.109476089e-07 18756.63152 18756.63172 4 ! 0 8 6.109476089e-07 18756.63152 18756.63172 4 ! 0 9 6.109476089e-07 18756.63153 18756.63172 4 ! 0 10 6.109476089e-07 18756.63152 18756.63172 4 ! dual decomposition reduced initial duality gap of 6.033529932 to 0 (to 0%) --- 49,60 ---- ! 0 0 0 18745.63044 18755.58674 1 ! 0 1 9.956299896 18752.03644 18761.99274 30 ! 0 2 0.3318766594 18752.03536 18760.66416 4 ! 0 3 2.156928673 18752.03605 18752.03713 4 ! 0 4 0.0001713186502 18752.03621 18752.03661 4 ! 0 5 4.06652689e-05 18752.03626 18752.03649 4 ! 0 6 1.110136509e-05 18752.03627 18752.03645 4 ! 0 7 2.518296242e-06 18752.03627 18752.03645 4 ! 0 8 6.109476089e-07 18752.03627 18752.03645 4 ! 0 9 6.109476089e-07 18752.03627 18752.03645 4 ! 0 10 6.109476089e-07 18752.03627 18752.03644 4 ! dual decomposition reduced initial duality gap of 6.406004602 to 0 (to 0%) *** ../../tests/examples/expected_results/test_cgp_with_db_hints/pred/galGal3.cgp.filtered.gff --- ../../tests/examples/results/test_cgp_with_db_hints/pred/galGal3.cgp.filtered.gff *************** *** 7 **** ! chr1 AUGUSTUS CDS 981 2158 1 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 7 ---- ! chr1 AUGUSTUS CDS 981 2158 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 9,10 **** ! chr1 AUGUSTUS CDS 3682 3788 0.98 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4747 4905 0.44 - 2 transcript_id "g1.t1"; gene_id "g1"; --- 9,10 ---- ! chr1 AUGUSTUS CDS 3682 3788 0.96 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4747 4905 0.52 - 2 transcript_id "g1.t1"; gene_id "g1"; *************** *** 12 **** ! chr1 AUGUSTUS CDS 6805 6953 0.82 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 12 ---- ! chr1 AUGUSTUS CDS 6805 6953 0.78 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 14 **** ! chr1 AUGUSTUS CDS 20606 20787 0.68 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 14 ---- ! chr1 AUGUSTUS CDS 20606 20787 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 39 **** ! chr1 AUGUSTUS CDS 20923 21195 0.86 + 0 transcript_id "g2.t1"; gene_id "g2"; --- 39 ---- ! chr1 AUGUSTUS CDS 20923 21195 0.84 + 0 transcript_id "g2.t1"; gene_id "g2"; *** ../../tests/examples/expected_results/test_cgp_with_db_hints/pred/bosTau4.cgp.filtered.gff --- ../../tests/examples/results/test_cgp_with_db_hints/pred/bosTau4.cgp.filtered.gff *************** *** 7,8 **** ! chr1 AUGUSTUS CDS 1935 3094 0.97 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4798 5059 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 7,8 ---- ! chr1 AUGUSTUS CDS 1935 3094 0.98 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 4798 5059 1 - 0 transcript_id "g1.t1"; gene_id "g1"; *************** *** 10,11 **** ! chr1 AUGUSTUS CDS 7220 7378 1 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 9635 9684 1 - 1 transcript_id "g1.t1"; gene_id "g1"; --- 10,11 ---- ! chr1 AUGUSTUS CDS 7220 7378 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; ! chr1 AUGUSTUS CDS 9635 9684 0.98 - 1 transcript_id "g1.t1"; gene_id "g1"; *************** *** 14 **** ! chr1 AUGUSTUS CDS 26587 26768 0.98 - 0 transcript_id "g1.t1"; gene_id "g1"; --- 14 ---- ! chr1 AUGUSTUS CDS 26587 26768 0.97 - 0 transcript_id "g1.t1"; gene_id "g1"; ---------------------------------------------------------------------- Ran 8 tests in 302.305s FAILED (failures=6) make: *** [Makefile:45: test] Error 1 * ERROR: sci-biology/augustus-3.4.0-r2::gentoo failed (test phase): * Make test failed. See above for details. * * Call stack: * ebuild.sh, line 122: Called src_test * environment, line 1414: Called default * phase-functions.sh, line 872: Called default_src_test * phase-functions.sh, line 901: Called __eapi0_src_test * phase-helpers.sh, line 836: Called die * The specific snippet of code: * ${emake_cmd} ${internal_opts} test || \ * die "Make test failed. See above for details." * * If you need support, post the output of `emerge --info '=sci-biology/augustus-3.4.0-r2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/augustus-3.4.0-r2::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-biology/augustus-3.4.0-r2:20220924-170307.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0' * S: '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0'