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Bug 868363 - sci-biology/augustus-3.4.0-r3 calls g++ directly
Summary: sci-biology/augustus-3.4.0-r3 calls g++ directly
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PullRequest
Depends on:
Blocks: tc-directly
  Show dependency tree
 
Reported: 2022-09-04 07:34 UTC by Agostino Sarubbo
Modified: 2025-02-11 01:38 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,88.16 KB, text/plain)
2022-09-04 07:34 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-09-04 07:34:25 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/augustus-3.4.0-r2 calls g++ directly.
Discovered on: amd64 (internal ref: ci)

NOTE:
As per QA policy, toolchain tools must not be called directly because they can cause issue in cross-compiling and because is not possible use a different C++ implementation (like clang++). To reproduce, please use sys-devel/gcc-config[-native-symlinks], sys-devel/binutils-config[-native-symlinks].
Comment 1 Agostino Sarubbo gentoo-dev 2022-09-04 07:34:28 UTC
Created attachment 803086 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-09-04 07:34:30 UTC
Error(s) that match a know pattern:


/bin/sh: line 1: g++: command not found
Comment 3 Agostino Sarubbo gentoo-dev 2023-02-05 08:57:28 UTC
ci has reproduced this issue with version 3.4.0-r3 - Updating summary.
Comment 4 Alfred Wingate 2025-02-10 21:10:31 UTC
Fixed upstream in https://github.com/Gaius-Augustus/Augustus/commit/fa2bdd42fd37326fc0ea5ba4a04012ba30ae0ed2. 3.5.0 includes this change.
Comment 5 Larry the Git Cow gentoo-dev 2025-02-11 01:38:01 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7fdfd97f34314b9fb85bcbadb46efc07b94b67aa

commit 7fdfd97f34314b9fb85bcbadb46efc07b94b67aa
Author:     Alfred Wingate <parona@protonmail.com>
AuthorDate: 2025-02-10 19:14:46 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2025-02-11 01:36:17 +0000

    sci-biology/augustus: add 3.5.0
    
    * Add missing dependency on python with tests.
    * Wire up unittests.
    * Disable test comparing on musl. This follows upstream with non-amd64 and
      non-linux environments.
    
    Bug: https://bugs.gentoo.org/868363
    Bug: https://bugs.gentoo.org/873025
    Signed-off-by: Alfred Wingate <parona@protonmail.com>
    Closes: https://github.com/gentoo/gentoo/pull/40521
    Signed-off-by: Sam James <sam@gentoo.org>

 sci-biology/augustus/Manifest              |  1 +
 sci-biology/augustus/augustus-3.5.0.ebuild | 93 ++++++++++++++++++++++++++++++
 2 files changed, 94 insertions(+)