Created attachment 885002 [details] ebuild log emerge --info sci-libs/pcl Portage 3.0.61 (python 3.11.8-final-0, default/linux/amd64/17.1, gcc-13, glibc-2.38-r10, 6.7.4-gentoo-std x86_64) ================================================================= System Settings ================================================================= System uname: Linux-6.7.4-gentoo-std-x86_64-Intel-R-_Core-TM-_i3-6100_CPU_@_3.70GHz-with-glibc2.38 KiB Mem: 3933672 total, 1260532 free KiB Swap: 65535996 total, 65534704 free Timestamp of repository gentoo: Wed, 14 Feb 2024 23:15:01 +0000 Head commit of repository gentoo: 8ba2bff67eee79c0342063107fc910f7d92a643e sh bash 5.1_p16-r6 ld GNU ld (Gentoo 2.41 p4) 2.41.0 distcc 3.4 x86_64-pc-linux-gnu [disabled] app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.1_p16-r6::gentoo dev-build/autoconf: 2.13-r8::gentoo, 2.71-r6::gentoo dev-build/automake: 1.16.5-r2::gentoo dev-build/cmake: 3.27.9::gentoo dev-build/libtool: 2.4.7-r1::gentoo dev-build/make: 4.4.1-r1::gentoo dev-build/meson: 1.3.1-r1::gentoo dev-java/java-config: 2.3.3-r1::gentoo dev-lang/perl: 5.38.2-r1::gentoo dev-lang/python: 2.7.18_p16-r2::gentoo, 3.10.13_p3::gentoo, 3.11.8_p1::gentoo dev-lang/rust: 1.76.0::pg_overlay sys-apps/baselayout: 2.14-r2::gentoo sys-apps/openrc: 0.53::gentoo sys-apps/sandbox: 2.38::gentoo sys-devel/binutils: 2.41-r3::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 15.0.7-r3::gentoo, 16.0.6::gentoo, 17.0.6::gentoo sys-devel/gcc: 10.5.0::gentoo, 11.4.1_p20231214::gentoo, 12.3.1_p20240112::gentoo, 13.2.1_p20240113-r1::gentoo sys-devel/gcc-config: 2.11::gentoo sys-devel/lld: 15.0.7::gentoo, 17.0.6::gentoo sys-devel/llvm: 15.0.7-r3::gentoo, 16.0.6::gentoo, 17.0.6::gentoo sys-kernel/linux-headers: 6.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.38-r10::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage priority: -1000 volatile: False sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 local location: /var/db/repos/local masters: gentoo priority: 10000 volatile: False ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" AR="gcc-ar" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.9/conf" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--alert y --alphabetical --ask-enter-invalid --autounmask y --autounmask-only n --autounmask-unrestricted-atoms y --autounmask-write y --complete-graph y --misspell-suggestions n --noconfmem --nospinner --tree --with-bdeps y" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-elog strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-march=core2 -mtune=native -O2 -pipe -Wa,-mbranches-within-32B-boundaries " GENTOO_MIRRORS="http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://ftp.halifax.rwth-aachen.de/gentoo/ http://ftp.free.fr/mirrors/ftp.gentoo.org/ http://mirrors.soeasyto.com/distfiles.gentoo.org/ http://gentoo.mirrors.ovh.net/gentoo-distfiles/ http://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/ http://mirror.leaseweb.com/gentoo/ http://www.mirrorservice.org/sites/distfiles.gentoo.org/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://mirror.bytemark.co.uk/gentoo/" LANG="fr_FR.utf8" LDFLAGS="-Wl,-O1 -Wl,-fuse-ld=bfd " LEX="flex" LINGUAS="fr" MAKEOPTS="-j1 -l1" NM="gcc-nm" PKGDIR="/var/cache/binpkgs" PORTAGE_COMPRESS="lzma" PORTAGE_COMPRESS_FLAGS="-9" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" RANLIB="gcc-ranlib" SHELL="/bin/bash" USE="amd64 asm custom-cflags emacs eselect-ldso fortran gentoo-vm gtk-doc minimal ocamlopt split-usr test-rust verify-sig" ABI_X86="64" ALSA_CARDS="hda-intel" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput" KERNEL="linux" L10N="fr" LUA_SINGLE_TARGET="lua5-4" LUA_TARGETS="lua5-4" PHP_TARGETS="php8-1" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" QEMU_USER_TARGETS="aarch64" RUBY_TARGETS="ruby31" VIDEO_CARDS="intel" Unset: ADDR2LINE, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ================================================================= Package Settings ================================================================= sci-libs/pcl-1.12.1-r2::gentoo was built with the following: USE="(-cuda) -doc opengl -openni openni2 -pcap -png -qhull qt5 -test -tutorials usb vtk" ABI_X86="(64)" CPU_FLAGS_X86="sse" CFLAGS="-march=core2 -mtune=native -O2 -flto -fuse-linker-plugin -fno-fat-lto-objects -pipe -Wa,-mbranches-within-32B-boundaries" CXXFLAGS="-march=core2 -mtune=native -O2 -flto -fuse-linker-plugin -fno-fat-lto-objects -pipe -Wa,-mbranches-within-32B-boundaries" FEATURES="merge-sync assume-digests usersync config-protect-if-modified userfetch pid-sandbox binpkg-multi-instance split-elog unknown-features-warn usersandbox binpkg-docompress pkgdir-index-trusted unmerge-logs buildpkg binpkg-logs binpkg-dostrip multilib-strict parallel-fetch ipc-sandbox strict userpriv distlocks sfperms unmerge-orphans compress-build-logs protect-owned qa-unresolved-soname-deps network-sandbox buildpkg-live ebuild-locks fixlafiles sandbox news preserve-libs"
Title edited because unsure if new boost is source of failure along with being source of rebuild: !!! existing preserved libs: >>> package: dev-libs/boost-1.84.0-r3 * - /usr/lib64/libboost_atomic.so.1.82.0 * used by /usr/bin/pcl_add_gaussian_noise (sci-libs/pcl-1.12.1-r2) * used by /usr/bin/pcl_boundary_estimation (sci-libs/pcl-1.12.1-r2) * used by /usr/bin/pcl_cluster_extraction (sci-libs/pcl-1.12.1-r2) * used by 141 other files * - /usr/lib64/libboost_filesystem.so.1.82.0 * used by /usr/bin/0ad (games-strategy/0ad-0.0.26_alpha-r1) * used by /usr/bin/pcl_add_gaussian_noise (sci-libs/pcl-1.12.1-r2) * used by /usr/bin/pcl_boundary_estimation (sci-libs/pcl-1.12.1-r2) * used by 142 other files * - /usr/lib64/libboost_iostreams.so.1.82.0 * used by /usr/bin/pcl_add_gaussian_noise (sci-libs/pcl-1.12.1-r2) * used by /usr/bin/pcl_boundary_estimation (sci-libs/pcl-1.12.1-r2) * used by /usr/bin/pcl_cluster_extraction (sci-libs/pcl-1.12.1-r2) * used by 87 other files * - /usr/lib64/libboost_system.so.1.82.0 * used by /usr/bin/0ad (games-strategy/0ad-0.0.26_alpha-r1) * used by /usr/bin/pcl_outofcore_print (sci-libs/pcl-1.12.1-r2) * used by /usr/bin/pcl_outofcore_process (sci-libs/pcl-1.12.1-r2) * used by 56 other files Use emerge @preserved-rebuild to rebuild packages using these libraries
The "pcl-1.13.1-boost-1.84.patch" (included for sci-libs/pcl-1.13.1) will also fix sci-libs/pcl-1.12.1-r2 One can add as a custom patch by dropping the patch into /etc/portage/patches/sci-libs/pcl-1.12.1-r2
Currently testing under root account: mkdir --parents /etc/portage/patches/sci-libs/pcl-1.12.1-r2 cp /var/db/repos/gentoo/sci-libs/pcl/files/pcl-1.13.1-boost-1.84.patch /etc/portage/patches/sci-libs/pcl-1.12.1-r2 emerge -1 sci-libs/pcl
*** This bug has been marked as a duplicate of bug 921289 ***
