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Bug 909570 - sci-mathematics/polymake-4.9 - ERROR: sci-mathematics/polymake-4.9::gentoo failed (configure phase):
Summary: sci-mathematics/polymake-4.9 - ERROR: sci-mathematics/polymake-4.9::gentoo fa...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL: https://forum.polymake.org/viewtopic....
Whiteboard:
Keywords:
Depends on:
Blocks: perl-5.38
  Show dependency tree
 
Reported: 2023-07-03 18:32 UTC by Toralf Förster
Modified: 2023-11-13 22:19 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.75 KB, text/plain)
2023-07-03 18:32 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,59.79 KB, text/plain)
2023-07-03 18:32 UTC, Toralf Förster
Details
environment (environment,78.88 KB, text/plain)
2023-07-03 18:32 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,780 bytes, application/x-xz)
2023-07-03 18:32 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,11.36 KB, application/x-xz)
2023-07-03 18:32 UTC, Toralf Förster
Details
sci-mathematics:polymake-4.9:20230703-182803.log (sci-mathematics:polymake-4.9:20230703-182803.log,2.98 KB, text/plain)
2023-07-03 18:32 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,19.52 KB, application/x-xz)
2023-07-03 18:32 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2023-07-03 18:32:26 UTC
You can install a custom perl version in your home directory using perlbrew
(https://perlbrew.pl). Make sure to append '-Duseshrplib' to the install
command if you want to use libpolymake (e.g. for the jupyter interface) and to
install all required perl modules which are listed after running configure
again with the new perl.
 * ERROR: sci-mathematics/polymake-4.9::gentoo failed (configure phase):
 *   (no error message)
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_systemd_merged_usr-20230702-220152

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 16.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/16/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/16
16.0.6
Python 3.11.4
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.69.0
  [2]   rust-1.69.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 17.0.7_p7 [openjdk-bin-17]
2)	Eclipse Temurin JDK 8.372_p07 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17  system-vm

php cli (if any):
go version go1.20.5 linux/amd64

  HEAD of ::gentoo
commit 43e2f353f58ca987b5ef4d71b74c840ca5d0a3eb
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Mon Jul 3 15:32:06 2023 +0000

    2023-07-03 15:32:05 UTC

emerge -qpvO sci-mathematics/polymake
[ebuild  N    ] sci-mathematics/polymake-4.9  USE="bliss cdd flint normaliz ppl singular -libpolymake -lrs -nauty"
Comment 1 Toralf Förster gentoo-dev 2023-07-03 18:32:27 UTC
Created attachment 865109 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-07-03 18:32:29 UTC
Created attachment 865110 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2023-07-03 18:32:30 UTC
Created attachment 865111 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-07-03 18:32:31 UTC
Created attachment 865112 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2023-07-03 18:32:32 UTC
Created attachment 865113 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2023-07-03 18:32:32 UTC
Created attachment 865114 [details]
sci-mathematics:polymake-4.9:20230703-182803.log
Comment 7 Toralf Förster gentoo-dev 2023-07-03 18:32:33 UTC
Created attachment 865115 [details]
temp.tar.xz
Comment 9 Michael Orlitzky gentoo-dev 2023-08-23 12:54:24 UTC
I'll go ahead and mask it. It doesn't look like there's much hope for a fix.
Comment 10 Larry the Git Cow gentoo-dev 2023-08-23 13:26:35 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=60a2005dab7f232a7b64cf2a417636378403f76c

commit 60a2005dab7f232a7b64cf2a417636378403f76c
Author:     Michael Orlitzky <mjo@gentoo.org>
AuthorDate: 2023-08-23 12:57:35 +0000
Commit:     Michael Orlitzky <mjo@gentoo.org>
CommitDate: 2023-08-23 13:24:34 +0000

    profiles: mask sci-mathematics/polymake
    
    It's not compatible with perl-5.38 and no short-term fix is pending.
    
    Bug: https://bugs.gentoo.org/909570
    Signed-off-by: Michael Orlitzky <mjo@gentoo.org>

 profiles/base/package.use.mask | 4 ++++
 profiles/package.mask          | 5 +++++
 2 files changed, 9 insertions(+)
Comment 11 Larry the Git Cow gentoo-dev 2023-09-23 00:58:32 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=152ef9448562ed6e385380fa31bc647bc78311ce

commit 152ef9448562ed6e385380fa31bc647bc78311ce
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2023-09-23 00:56:44 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2023-09-23 00:56:44 +0000

    sci-mathematics/polymake: treeclean
    
    Closes: https://bugs.gentoo.org/909570
    Closes: https://bugs.gentoo.org/883153
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/arch/powerpc/ppc32/package.use.mask       |   4 -
 profiles/arch/x86/package.use.mask                 |   8 --
 profiles/package.mask                              |   5 -
 sci-mathematics/polymake/Manifest                  |   2 -
 .../polymake/files/polymake-4.6-perl-5.36.patch    |  15 ---
 sci-mathematics/polymake/metadata.xml              |  55 ---------
 sci-mathematics/polymake/polymake-4.6-r1.ebuild    | 124 ---------------------
 sci-mathematics/polymake/polymake-4.9.ebuild       | 122 --------------------
 8 files changed, 335 deletions(-)
Comment 12 Larry the Git Cow gentoo-dev 2023-11-13 22:19:22 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c5e5ffa9e5052ad286c2ed2e5fee818bd9630686

commit c5e5ffa9e5052ad286c2ed2e5fee818bd9630686
Author:     Michael Orlitzky <mjo@gentoo.org>
AuthorDate: 2023-11-13 19:36:06 +0000
Commit:     Michael Orlitzky <mjo@gentoo.org>
CommitDate: 2023-11-13 22:17:04 +0000

    sci-mathematics/polymake: new old package, add 4.11
    
    This is back from the dead after being removed for lack of perl-5.38
    support. Only a month ago, upstream's opinion was that "any hacks we
    would try here will be in vain," but it looks like they've decided to
    adopt a short-term fix for perl-5.38. We bring it back, and make use
    of $NINJA_DEPEND while we're at it (samurai works fine).
    
    The new patch (and a short explanation from upstream) can be found
    on Debian bug 1042521.
    
    Bug: https://bugs.gentoo.org/909570
    Closes: https://bugs.gentoo.org/917155
    Signed-off-by: Michael Orlitzky <mjo@gentoo.org>

 sci-mathematics/polymake/Manifest                  |   1 +
 .../files/polymake-4.11-singular-sat.patch         |  53 +++++++++
 sci-mathematics/polymake/metadata.xml              |  54 +++++++++
 sci-mathematics/polymake/polymake-4.11.ebuild      | 124 +++++++++++++++++++++
 4 files changed, 232 insertions(+)