https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/ Issue: sci-biology/hmmer-2.3.2-r5 has implicit function declarations in configure logs (GCC-13-SYSTEM). Discovered on: amd64 (internal ref: gcc13_tinderbox) NOTE: (GCC-13-SYSTEM) in the summary means that the bug was found on a machine that runs gcc-13 but this bug MAY or MAY NOT BE related to the new compiler See also: https://bugs.gentoo.org/898488#c4.
Created attachment 856951 [details] build.log build log and emerge --info
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4919e107f95d762348df57ca9a8e75307d9222bc commit 4919e107f95d762348df57ca9a8e75307d9222bc Author: NHOrus <jy6x2b32pie9@yahoo.com> AuthorDate: 2024-05-08 09:30:27 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2024-05-09 01:09:05 +0000 sci-biology/hmmer: Add missing include into configure There are no autotools source files, so we can't just autoreconf the problem out of existence [sam: Revbump.] Closes: https://bugs.gentoo.org/900551 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Closes: https://github.com/gentoo/gentoo/pull/36599 Signed-off-by: Sam James <sam@gentoo.org> .../hmmer-2.3.2-fix-missing-include-in-configure.patch | 18 ++++++++++++++++++ .../{hmmer-2.3.2-r5.ebuild => hmmer-2.3.2-r6.ebuild} | 3 ++- 2 files changed, 20 insertions(+), 1 deletion(-)
