too long lines were shrinked: 16 | class NoPosPlusRecord : public Record { | ^~~~~~~~~~~~~~~ * compiling src/utils/general/CompressionTools.cpp x86_64-pc-linux-gnu-g++ -Wall -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -D_FILE_OFFSET_BITS=64 -DWITH_HTS_CB_API -Isrc/annotateBed -Isrc/bamToBed -Isrc/bamToFastq -Isrc/bedToBam -Isrc/bedpeToBam -Isrc/bedToIgv -Isrc/bed12ToBed6 -Isrc/closestFile -Isrc/clusterBed -Isrc/complementFile In file included from src/utils/general/ParseTools.cpp:1: src/utils/general/ParseTools.h: In function 'void int2str(U, T&, bool)': src/utils/general/ParseTools.h:55:9: error: 'uint32_t' was not declared in this scope 55 | uint32_t n; | ^~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no_multilib-j4-20230218-230029 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-13 * clang/llvm (if any): clang version 15.0.7 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/15/bin Configuration file: /etc/clang/clang.cfg /usr/lib/llvm/15 15.0.7 Python 3.10.10 Available Rust versions: [1] rust-1.67.1 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.18_p10 [openjdk-bin-11] *) Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17] 3) Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): HEAD of ::gentoo commit f86fa8f9ffe61663407dff34bbc41fddc56379b6 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Wed Feb 22 08:02:04 2023 +0000 2023-02-22 08:02:03 UTC emerge -qpvO sci-biology/bedtools [ebuild N ] sci-biology/bedtools-2.30.0 USE="-test"
Created attachment 853850 [details] emerge-info.txt
Created attachment 853852 [details] emerge-history.txt.bz2
Created attachment 853854 [details] environment
Created attachment 853856 [details] etc.clang.tar.bz2
Created attachment 853858 [details] etc.portage.tar.bz2
Created attachment 853860 [details] sci-biology:bedtools-2.30.0:20230222-082931.log.bz2
Created attachment 853862 [details] temp.tar.bz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0f6ed95b2b57ae7f9978b1a3b1620c3dcb06256e commit 0f6ed95b2b57ae7f9978b1a3b1620c3dcb06256e Author: David Seifert <soap@gentoo.org> AuthorDate: 2023-04-18 10:04:37 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2023-04-18 10:04:37 +0000 sci-biology/bedtools: fix gcc 13 build Closes: https://bugs.gentoo.org/895860 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/bedtools/bedtools-2.30.0.ebuild | 1 + .../bedtools/files/bedtools-2.30.0-gcc13.patch | 25 ++++++++++++++++++++++ 2 files changed, 26 insertions(+)