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Bug 895204 - sci-biology/augustus-3.4.0-r3 - ../.../sqliteDB.hh: error: uint64_t has not been declared
Summary: sci-biology/augustus-3.4.0-r3 - ../.../sqliteDB.hh: error: uint64_t has not b...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: gcc-13 920140
  Show dependency tree
 
Reported: 2023-02-18 08:38 UTC by Toralf Förster
Modified: 2024-01-17 01:43 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,20.00 KB, text/plain)
2023-02-18 08:38 UTC, Toralf Förster
Details
emerge-history.txt.bz2 (emerge-history.txt.bz2,68.05 KB, application/x-bzip)
2023-02-18 08:38 UTC, Toralf Förster
Details
environment (environment,64.94 KB, text/plain)
2023-02-18 08:38 UTC, Toralf Förster
Details
etc.clang.tar.bz2 (etc.clang.tar.bz2,707 bytes, application/x-bzip)
2023-02-18 08:38 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,37.10 KB, application/x-bzip)
2023-02-18 08:39 UTC, Toralf Förster
Details
sci-biology:augustus-3.4.0-r3:20230218-010129.log (sci-biology:augustus-3.4.0-r3:20230218-010129.log,14.62 KB, text/plain)
2023-02-18 08:39 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,17.94 KB, application/x-bzip)
2023-02-18 08:39 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2023-02-18 08:38:55 UTC
too long lines were shrinked:

x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o exonmodel.o exonmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o orthograph.o orthograph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o train_logReg_param.o train_logReg_param.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/my
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o utrmodel.o utrmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
x86_64-pc-linux-gnu-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -pipe -march=native -fno-diagnostics-color -O2 -o sqliteDB.o sqliteDB.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ 
In file included from sqliteDB.cc:10:
../include/sqliteDB.hh:93:29: error: uint64_t has not been declared
   93 |     void bindInt64(int idx, uint64_t x);
      |                             ^~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma_systemd-j4-20230214-230019

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
gcc-config -l:
 [1] x86_64-pc-linux-gnu-11
 [2] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 15.0.7
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.7
Python 3.10.10
Available Ruby profiles:
  [1]   ruby27 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.67.1 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17]
2)	Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
  [1]   php7.4
  [2]   php8.0
  [3]   php8.2 *

  HEAD of ::gentoo
commit b309713407bd4a43c5a55bd52d11dc6c55f0d685
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Feb 17 23:46:58 2023 +0000

    2023-02-17 23:46:57 UTC

emerge -qpvO sci-biology/augustus
[ebuild  N    ] sci-biology/augustus-3.4.0-r3  USE="-doc"
Comment 1 Toralf Förster gentoo-dev 2023-02-18 08:38:56 UTC
Created attachment 852398 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-02-18 08:38:57 UTC
Created attachment 852400 [details]
emerge-history.txt.bz2
Comment 3 Toralf Förster gentoo-dev 2023-02-18 08:38:58 UTC
Created attachment 852402 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-02-18 08:38:59 UTC
Created attachment 852404 [details]
etc.clang.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2023-02-18 08:39:01 UTC
Created attachment 852406 [details]
etc.portage.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2023-02-18 08:39:02 UTC
Created attachment 852408 [details]
sci-biology:augustus-3.4.0-r3:20230218-010129.log
Comment 7 Toralf Förster gentoo-dev 2023-02-18 08:39:02 UTC
Created attachment 852410 [details]
temp.tar.bz2