| %ld x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o fasta_format.o fasta_format.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o msa_format.o msa_format.c fasta_format.c: In function read_fasta: fasta_format.c:48:9: error: implicit declaration of function stringptr_cat_pos; did you mean stringptr_cat? [-Werror=implicit-function-declaration] 48 | stringptr_cat_pos(&tmp_seq,line,&length); | ^~~~~~~~~~~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_plasma_systemd-j4-20221002-192609 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12.2.0 * clang/llvm (if any): clang version 15.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/15/bin /usr/lib/llvm/15 15.0.1 Python 3.10.7 Available Ruby profiles: [1] ruby27 (with Rubygems) [2] ruby30 (with Rubygems) * Available Rust versions: [1] rust-bin-1.64.0 * The following VMs are available for generation-2: 1) IcedTea JDK 3.16.0 [icedtea-bin-8] 2) OpenJDK 17.0.5_p5 [openjdk-17] *) Eclipse Temurin JDK 17.0.4.1_p1 [openjdk-bin-17] 4) Eclipse Temurin JDK 8.345_p01 [openjdk-bin-8] Available Java Virtual Machines: [1] icedtea-bin-8 [2] openjdk-17 [3] openjdk-bin-8 [4] openjdk-bin-17 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): GNU Make 4.3 HEAD of ::gentoo commit 9f618b8c2264f1184e219c8eec46be18af4ea9cb Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Oct 4 09:33:57 2022 +0000 2022-10-04 09:33:56 UTC emerge -qpvO sci-biology/poa [ebuild N ] sci-biology/poa-2-r1
Created attachment 819487 [details] emerge-info.txt
Created attachment 819490 [details] emerge-history.txt
Created attachment 819493 [details] environment
Created attachment 819496 [details] etc.portage.tar.bz2
Created attachment 819499 [details] sci-biology:poa-2-r1:20221004-100428.log
Created attachment 819502 [details] temp.tar.bz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fa0ac988b12a27a62fa356dd2db95528534bea20 commit fa0ac988b12a27a62fa356dd2db95528534bea20 Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-10-23 19:18:06 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-10-23 19:18:06 +0000 sci-biology/poa: fix clang 16 build Closes: https://bugs.gentoo.org/875038 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/poa/files/poa-2-clang16.patch | 74 +++++++++++++++++++++++++++++++ sci-biology/poa/poa-2-r1.ebuild | 3 +- 2 files changed, 76 insertions(+), 1 deletion(-)