* Package: sci-biology/poa-2-r1:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking poaV2.tar.gz to /var/tmp/portage/sci-biology/poa-2-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/poa-2-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... * Applying poa-2-respect-flags.patch ... [ ok ] * Applying poa-2-fno-common.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... make -j4 poa x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_score.o align_score.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o main.o main.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o black_flag.o black_flag.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o seq_util.o seq_util.c In file included from black_flag.c:4: black_flag.c: In function ‘black_flag_init_args’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int black_flag.c:109:3: note: in expansion of macro ‘CALLOC’ 109 | CALLOC(Program_name,len,char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld In file included from lpo.h:6, from main.c:3: main.c: In function ‘main’: ./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int main.c:183:3: note: in expansion of macro ‘CALLOC’ 183 | CALLOC (input_seqs, max_input_seqs, LPOSequence_T *); | ^~~~~~ ./default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int main.c:221:9: note: in expansion of macro ‘REALLOC’ 221 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); | ^~~~~~~ ./default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld In file included from ./default.h:16: main.c:225:30: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘FILE *’ [-Wformat=] 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 | po_list_file),"$Revision: 1.2.2.9 $"); | ~~~~~~~~~~~~ | | | FILE * ./black_flag.h:212:10: note: in definition of macro ‘WARN_MSG’ 212 | (sprintf MESSAGE,\ | ^~~~~~~ main.c:225:59: note: format string is defined here 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", | ~^ | | | char * ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int main.c:254:9: note: in expansion of macro ‘REALLOC’ 254 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); | ^~~~~~~ ./default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld In file included from seq_util.c:2: seq_util.c: In function ‘read_score_matrix’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int seq_util.c:170:3: note: in expansion of macro ‘CALLOC’ 170 | CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int seq_util.c:171:3: note: in expansion of macro ‘CALLOC’ 171 | CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o fasta_format.o fasta_format.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o msa_format.o msa_format.c fasta_format.c: In function ‘read_fasta’: fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration] 48 | stringptr_cat_pos(&tmp_seq,line,&length); | ^~~~~~~~~~~~~~~~~ | stringptr_cat cc1: some warnings being treated as errors In file included from msa_format.h:17, from msa_format.c:17: msa_format.c: In function ‘read_clustal’: make: *** [: fasta_format.o] Error 1 make: *** Waiting for unfinished jobs.... default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:169:7: note: in expansion of macro ‘REALLOC’ 169 | REALLOC (seq_names, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:171:7: note: in expansion of macro ‘REALLOC’ 171 | REALLOC (seq_titles, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:174:7: note: in expansion of macro ‘REALLOC’ 174 | REALLOC (aln_mat, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:176:7: note: in expansion of macro ‘REALLOC’ 176 | REALLOC (aln_lengths, n_seqs, int); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ | ~~~~~ | | | size_t {aka long unsigned int} default.h:184:22: note: in definition of macro ‘REALLOC’ 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ default.h:184:68: note: format string is defined here 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ msa_format.c:185:5: note: in expansion of macro ‘REALLOC’ 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:34: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:185:5: note: in expansion of macro ‘REALLOC’ 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c: In function ‘read_pir’: default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:248:7: note: in expansion of macro ‘REALLOC’ 248 | REALLOC (seq_names, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:250:7: note: in expansion of macro ‘REALLOC’ 250 | REALLOC (seq_titles, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:252:7: note: in expansion of macro ‘REALLOC’ 252 | REALLOC (aln_mat, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:254:7: note: in expansion of macro ‘REALLOC’ 254 | REALLOC (aln_lengths, n_seqs, int); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ | ~~~~~ default.h:184:22: note: in definition of macro ‘REALLOC’ 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ default.h:184:68: note: format string is defined here 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ msa_format.c:268:7: note: in expansion of macro ‘REALLOC’ 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:34: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:268:7: note: in expansion of macro ‘REALLOC’ 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c: In function ‘lpo_from_aln_mat’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:318:3: note: in expansion of macro ‘CALLOC’ 318 | CALLOC (column_ids, n_seqs+1, int *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:319:3: note: in expansion of macro ‘CALLOC’ 319 | CALLOC (res_ids, n_seqs+1, int *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:326:5: note: in expansion of macro ‘CALLOC’ 326 | CALLOC (column_ids[i], max_aln_length, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:327:5: note: in expansion of macro ‘CALLOC’ 327 | CALLOC (res_ids[i], max_aln_length, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:334:3: note: in expansion of macro ‘CALLOC’ 334 | CALLOC (consens_row, max_aln_length, char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:347:3: note: in expansion of macro ‘CALLOC’ 347 | CALLOC (lposeq, 1, LPOSequence_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:351:3: note: in expansion of macro ‘CALLOC’ 351 | CALLOC (lposeq->sequence, max_aln_length+1, char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:369:3: note: in expansion of macro ‘REALLOC’ 369 | REALLOC (lposeq->sequence, len+1, char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:375:5: note: in expansion of macro ‘CALLOC’ 375 | CALLOC (curr_seq, 1, LPOSequence_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:380:5: note: in expansion of macro ‘CALLOC’ 380 | CALLOC (curr_seq->sequence, aln_lengths[i]+1, char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:398:5: note: in expansion of macro ‘REALLOC’ 398 | REALLOC (curr_seq->sequence, len+1, char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c:404:5: error: implicit declaration of function ‘build_seq_to_po_index’ [-Werror=implicit-function-declaration] 404 | build_seq_to_po_index (lposeq); | ^~~~~~~~~~~~~~~~~~~~~ default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:406:5: note: in expansion of macro ‘CALLOC’ 406 | CALLOC (al_x, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:407:5: note: in expansion of macro ‘CALLOC’ 407 | CALLOC (al_y, lposeq->length, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c:428:5: error: implicit declaration of function ‘fuse_ring_identities’ [-Werror=implicit-function-declaration] 428 | fuse_ring_identities (lposeq->length, lposeq->letter, | ^~~~~~~~~~~~~~~~~~~~ msa_format.c: In function ‘filter_sequence_set’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:485:3: note: in expansion of macro ‘CALLOC’ 485 | CALLOC (keep_seq, n_seqs, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld cc1: some warnings being treated as errors make: *** [: msa_format.o] Error 1 * ERROR: sci-biology/poa-2-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/poa-2-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/poa-2-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:poa-2-r1:20221004-100428.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2' * S: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2'