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Bug 836945 - sci-misc/h5utils-1.13.1 - /.../ld: cannot find -loctinterp: No such file or directory
Summary: sci-misc/h5utils-1.13.1 - /.../ld: cannot find -loctinterp: No such file or d...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords: PATCH
Depends on: 858554
Blocks:
  Show dependency tree
 
Reported: 2022-04-06 20:21 UTC by Toralf Förster
Modified: 2022-07-17 10:21 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.62 KB, text/plain)
2022-04-06 20:21 UTC, Toralf Förster
Details
emerge-history.txt.bz2 (emerge-history.txt.bz2,70.83 KB, application/x-bzip)
2022-04-06 20:21 UTC, Toralf Förster
Details
environment (environment,72.78 KB, text/plain)
2022-04-06 20:21 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,30.10 KB, application/x-bzip)
2022-04-06 20:21 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,6.05 KB, application/x-bzip)
2022-04-06 20:21 UTC, Toralf Förster
Details
sci-misc:h5utils-1.13.1:20220406-170038.log (sci-misc:h5utils-1.13.1:20220406-170038.log,8.53 KB, text/plain)
2022-04-06 20:22 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,21.04 KB, application/x-bzip)
2022-04-06 20:22 UTC, Toralf Förster
Details
h5utils-1.13.1-missing-octave-linker-flags.patch (h5utils-1.13.1-missing-octave-linker-flags.patch,528 bytes, patch)
2022-05-03 16:33 UTC, Attila Tóth
Details | Diff

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Description Toralf Förster gentoo-dev 2022-04-06 20:21:54 UTC
too long lines were shrinked:

x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromh4 h5fromh4.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm 
mkoctfile -DHAVE_CONFIG_H  ./h5read.cc ./arrayh5.c -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5cyl2cart h5cyl2cart.o arrayh5.o h5utils.o  -lhdf5 -lz -lm 
x86_64-pc-linux-gnu-gcc  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm 
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -loctinterp: No such file or directory
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -loctave: No such file or directory
collect2: error: ld returned 1 exit status

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-j4_test-20220330-230006

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.1 *
clang/llvm (if any):
clang version 14.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/14/bin
/usr/lib/llvm/14
14.0.0
Python 3.9.12
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems)
  [3]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.59.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 11.0.14_p9 [openjdk-bin-11]
2)	Eclipse Temurin JDK 8.322_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:
  [1]   php7.4
  [2]   php8.0 *
  [3]   php8.1

  HEAD of ::gentoo
commit d4d59aa9175b676a8dfc8b7737a34ccabf4c433f
Merge: cb8d3702e879 e3f1518df1c4
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Apr 6 14:34:27 2022 +0000

    Merge updates from master

emerge -qpvO sci-misc/h5utils
[ebuild  N    ] sci-misc/h5utils-1.13.1  USE="hdf octave"
Comment 1 Toralf Förster gentoo-dev 2022-04-06 20:21:55 UTC
Created attachment 769073 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2022-04-06 20:21:56 UTC
Created attachment 769076 [details]
emerge-history.txt.bz2
Comment 3 Toralf Förster gentoo-dev 2022-04-06 20:21:57 UTC
Created attachment 769079 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2022-04-06 20:21:59 UTC
Created attachment 769082 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2022-04-06 20:21:59 UTC
Created attachment 769085 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2022-04-06 20:22:00 UTC
Created attachment 769088 [details]
sci-misc:h5utils-1.13.1:20220406-170038.log
Comment 7 Toralf Förster gentoo-dev 2022-04-06 20:22:01 UTC
Created attachment 769091 [details]
temp.tar.bz2
Comment 8 Attila Tóth 2022-05-03 16:33:40 UTC
Created attachment 776465 [details, diff]
h5utils-1.13.1-missing-octave-linker-flags.patch

Dirty workaround.
Comment 9 Alessandro Barbieri 2022-05-05 02:43:25 UTC
see also https://bugs.gentoo.org/show_bug.cgi?id=835021