* Package: sci-misc/h5utils-1.13.1 * Repository: gentoo * Maintainer: sci@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc hdf kernel_linux octave userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking h5utils-1.13.1.tar.gz to /var/tmp/portage/sci-misc/h5utils-1.13.1/work >>> Source unpacked in /var/tmp/portage/sci-misc/h5utils-1.13.1/work >>> Preparing source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ... * Applying h5utils-1.13.1-automagic.patch ... [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' ... * Running 'aclocal --system-acdir=/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/aclocal' ... [ ok ] * Running 'autoconf --force' ... [ ok ] * Running 'autoheader' ... [ ok ] * Running 'automake --add-missing --copy --foreign --force-missing' ... [ ok ] * Running elibtoolize in: h5utils-1.13.1/ >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ... * econf: updating h5utils-1.13.1/config.sub with /usr/share/gnuconfig/config.sub * econf: updating h5utils-1.13.1/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/h5utils-1.13.1 --htmldir=/usr/share/doc/h5utils-1.13.1/html --libdir=/usr/lib64 --without-v5d --with-octave --with-hdf checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-pc-linux-gnu-gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for sin in -lm... yes checking for snprintf... yes checking for inflate in -lz... yes checking for png_create_write_struct in -lpng... yes checking for evaluator_get_variables in -lmatheval... no configure: WARNING: can't find libmatheval: won't be able to compile h5math checking for hdf.h... yes checking for hdf/hdf.h... no checking for jpeg_start_compress in -ljpeg... yes checking for DFSDgetdata in -ldf... yes checking for H5Fopen in -lhdf5... yes checking for mkoctfile... mkoctfile checking for octave... octave checking for octave-config... octave-config checking where octave plugins go... /usr/lib64/octave/6.4.0/site/oct/x86_64-pc-linux-gnu checking for arpa/inet.h... yes checking for netinet/in.h... yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for uint16_t... yes checking for uint32_t... yes checking for htons... yes checking size of float... 4 checking for htonl... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/man/h5topng.1 config.status: creating config.h config.status: executing depfiles commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ... make -j4 make all-am make[1]: Entering directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5totxt.o h5totxt.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o arrayh5.o arrayh5.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5utils.o h5utils.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5fromtxt.o h5fromtxt.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5tovtk.o h5tovtk.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h4fromh5.o h4fromh5.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o arrayh4.o arrayh4.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5fromh4.o h5fromh4.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5topng.o h5topng.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o writepng.o writepng.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -pipe -march=native -fno-diagnostics-color -O2 -c -o h5cyl2cart.o h5cyl2cart.c x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5totxt h5totxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromtxt h5fromtxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5tovtk h5tovtk.o arrayh5.o h5utils.o -lhdf5 -lz -lm x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h4fromh5 h4fromh5.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromh4 h5fromh4.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm mkoctfile -DHAVE_CONFIG_H ./h5read.cc ./arrayh5.c -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -lhdf5 -lz -lm x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5cyl2cart h5cyl2cart.o arrayh5.o h5utils.o -lhdf5 -lz -lm x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -loctinterp: No such file or directory /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -loctave: No such file or directory collect2: error: ld returned 1 exit status make[1]: *** [Makefile:1112: h5read.oct] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' make: *** [Makefile:406: all] Error 2 * ERROR: sci-misc/h5utils-1.13.1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-misc/h5utils-1.13.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-misc/h5utils-1.13.1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-misc:h5utils-1.13.1:20220406-170038.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/environment'. * Working directory: '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' * S: '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'