Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 836857 - sci-biology/pysam-0.17.0 fails tests on MUSL: Fatal Python error: Segmentation fault
Summary: sci-biology/pysam-0.17.0 fails tests on MUSL: Fatal Python error: Segmentatio...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-04-05 20:15 UTC by Agostino Sarubbo
Modified: 2022-04-05 20:15 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,857.38 KB, text/plain)
2022-04-05 20:15 UTC, Agostino Sarubbo
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Agostino Sarubbo gentoo-dev 2022-04-05 20:15:18 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/pysam-0.17.0 fails tests on MUSL.
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
This machine uses MUSL libc
Comment 1 Agostino Sarubbo gentoo-dev 2022-04-05 20:15:21 UTC
Created attachment 768917 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2022-04-05 20:15:21 UTC
Error(s) that match a know pattern in addition to what has been reported in the summary:


/var/tmp/portage/sci-biology/pysam-0.17.0/temp/environment: line 1867:  6062 Segmentation fault      "${@}"
Fatal Python error: Segmentation fault
Fatal Python error: Segmentation fault