https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/ Issue: sci-biology/pysam-0.17.0 fails tests on MUSL. Discovered on: amd64 (internal ref: tinderbox_musl) NOTE: This machine uses MUSL libc
Created attachment 768917 [details] build.log build log and emerge --info
Error(s) that match a know pattern in addition to what has been reported in the summary: /var/tmp/portage/sci-biology/pysam-0.17.0/temp/environment: line 1867: 6062 Segmentation fault "${@}" Fatal Python error: Segmentation fault Fatal Python error: Segmentation fault
tinderbox_musl has reproduced this issue with version 0.19.1 - Updating summary.
Could you try with epytest -s?
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a46d8d048179a0c699775baa9eb4157949e4671c commit a46d8d048179a0c699775baa9eb4157949e4671c Author: David Seifert <soap@gentoo.org> AuthorDate: 2023-04-06 18:10:36 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2023-04-06 18:10:36 +0000 sci-biology/pysam: add 0.21.0 Bug: https://bugs.gentoo.org/836857 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/pysam/Manifest | 1 + sci-biology/pysam/pysam-0.21.0.ebuild | 66 +++++++++++++++++++++++++++++++++++ 2 files changed, 67 insertions(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1cea5dc52d7f3cb7f2451d8e58bef8908b8df687 commit 1cea5dc52d7f3cb7f2451d8e58bef8908b8df687 Author: David Seifert <soap@gentoo.org> AuthorDate: 2023-04-06 19:29:06 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2023-04-06 19:29:06 +0000 sci-biology/pysam: drop 0.20.0 Closes: https://bugs.gentoo.org/836857 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/pysam/Manifest | 1 - sci-biology/pysam/pysam-0.20.0.ebuild | 69 ----------------------------------- 2 files changed, 70 deletions(-)
