I am trying to install dev-python/pandas, it requires dev-python/numpy with "lapack" USE flag. During the process, the numpy installation fails with "AttributeError: 'NoneType' object has no attribute 'endswith'" (without lapack numpy works). Here is the Error: copying numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/f2py/tests/src/array_from_pyobj creating /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/f2py/tests/src/common copying numpy/f2py/tests/src/common/block.f -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/f2py/tests/src/common creating /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/linalg/tests copying numpy/linalg/tests/test_regression.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/linalg/tests/ copying numpy/linalg/tests/test_linalg.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/linalg/tests/ copying numpy/linalg/tests/test_deprecations.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/linalg/tests/ copying numpy/linalg/tests/__init__.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/linalg/tests/ copying numpy/linalg/tests/test_build.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/linalg/tests/ creating /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/compat/tests copying numpy/compat/tests/test_compat.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/compat/tests/ copying numpy/compat/tests/__init__.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/compat/tests/ running install_clib customize UnixCCompiler Traceback (most recent call last): File "setup.py", line 419, in <module> setup_package() File "setup.py", line 411, in setup_package setup(**metadata) File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/core.py", line 171, in setup return old_setup(**new_attr) File "/usr/lib64/python2.7/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/usr/lib64/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install.py", line 62, in run r = self.setuptools_run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install.py", line 36, in setuptools_run return distutils_install.run(self) File "/usr/lib64/python2.7/distutils/command/install.py", line 575, in run self.run_command(cmd_name) File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install_data.py", line 19, in run self.run_command('install_clib') File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install_clib.py", line 34, in run source = os.path.join(build_dir, name) File "/usr/lib64/python2.7/posixpath.py", line 70, in join elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith' * ERROR: dev-python/numpy-1.16.5::gentoo failed (install phase): Reproducible: Always emerge dev-python/pandas --ask --verbose WARNING: One or more repositories have missing repo_name entries: /var/db/repos/localrepo/profiles/repo_name NOTE: Each repo_name entry should be a plain text file containing a unique name for the repository on the first line. These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] dev-python/numpy-1.16.5::gentoo USE="lapack* -doc -test" PYTHON_TARGETS="python2_7 python3_6 -python3_7" 0 KiB [ebuild N ] dev-python/numexpr-2.6.9::gentoo USE="-mkl" PYTHON_TARGETS="python3_6 -python3_7" 0 KiB [ebuild N ] sci-libs/scipy-1.1.0::gentoo USE="-doc -sparse -test" PYTHON_TARGETS="python2_7 python3_6 -python3_7" 0 KiB [ebuild N ] dev-python/bottleneck-1.2.1-r1::gentoo USE="-test" PYTHON_TARGETS="python3_6 -python3_7" 0 KiB [ebuild N ] dev-python/pandas-0.24.2::gentoo USE="X (-doc) -full-support -minimal -test" PYTHON_TARGETS="python3_6 -python3_7" 0 KiB Total: 5 packages (4 new, 1 reinstall), Size of downloads: 0 KiB $ emerge --info WARNING: One or more repositories have missing repo_name entries: /var/db/repos/localrepo/profiles/repo_name NOTE: Each repo_name entry should be a plain text file containing a unique name for the repository on the first line. Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.1/desktop, gcc-9.2.0, glibc-2.29-r7, 5.4.28-gentoo x86_64) ================================================================= System uname: Linux-5.4.28-gentoo-x86_64-Intel-R-_Core-TM-_i7-4720HQ_CPU_@_2.60GHz-with-gentoo-2.6 KiB Mem: 16306228 total, 11238216 free KiB Swap: 16777212 total, 16777212 free Timestamp of repository gentoo: Tue, 14 Apr 2020 07:00:01 +0000 Head commit of repository gentoo: 990a108c6aaae27d968207b6b75da9eb5a9d0cd9 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.33.1 p2) 2.33.1 app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.17-r2::gentoo, 3.6.10-r1::gentoo, 3.7.7-r1::gentoo dev-util/cmake: 3.16.5::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.42.1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.33.1-r1::gentoo sys-devel/gcc: 9.2.0-r2::gentoo sys-devel/gcc-config: 2.2.1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r7::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes localrepo location: /var/db/repos/localrepo masters: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/var/cache/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="ru_RU.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli crypt cups dbus dri dts dvd dvdr elogind emboss encode exif flac fortran gdbm gif gpm gtk iconv icu ipv6 jpeg lcms ldap libnotify libtirpc mad mng mp3 mp4 mpeg mtp multilib ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt5 readline sdl seccomp spell split-usr ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="synaptics libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Thank you for the report. We need to have all information at hand before ticket assignment. That is why I ask you to * attach the logs as described on https://wiki.gentoo.org/wiki/Attach_the_logs_to_the_bug_ticket
Created attachment 632950 [details] build.log
Created attachment 632984 [details] build failure I'm attaching a build failure that appears to be the same, except I don't compile with +lapack. I ran into this while rebuilding world; numpy was otherwise previously installed fine with the same version.
I think a clue to the problem is given at the beginning. /usr/lib64/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) Note that the build also fails with python3.7 with the same warning. numpy-1.17.4-r2 builds without issue. I am not completely sure why 'define_macros' is unrecognised though.
possible duplicate of https://bugs.gentoo.org/717706
*** This bug has been marked as a duplicate of bug 717706 ***
