Numpy fails compiling and throws the aforementioned error. Please find the attached logs. Thanks. Reproducible: Always Steps to Reproduce: 1. Emerge dev-python/numpy. 2. Failure after the byte-compilation stage. Actual Results: ... copying numpy/compat/tests/test_compat.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/compat/tests/ copying numpy/compat/tests/__init__.py -> /var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7/usr/lib64/python2.7/site-packages/numpy/compat/tests/ running install_clib customize UnixCCompiler Traceback (most recent call last): File "setup.py", line 419, in <module> setup_package() File "setup.py", line 411, in setup_package setup(**metadata) File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/core.py", line 171, in setup return old_setup(**new_attr) File "/usr/lib64/python2.7/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/usr/lib64/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install.py", line 62, in run r = self.setuptools_run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install.py", line 36, in setuptools_run return distutils_install.run(self) File "/usr/lib64/python2.7/distutils/command/install.py", line 575, in run self.run_command(cmd_name) File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install_data.py", line 19, in run self.run_command('install_clib') File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/var/tmp/portage/dev-python/numpy-1.16.5/work/numpy-1.16.5/numpy/distutils/command/install_clib.py", line 34, in run source = os.path.join(build_dir, name) File "/usr/lib64/python2.7/posixpath.py", line 70, in join elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith' * ERROR: dev-python/numpy-1.16.5::gentoo failed (install phase): * (no error message) * * Call stack: * ebuild.sh, line 125: Called src_install * environment, line 3560: Called distutils-r1_src_install * environment, line 1511: Called _distutils-r1_run_foreach_impl 'python_install' * environment, line 462: Called python_foreach_impl 'distutils-r1_run_phase' 'python_install' * environment, line 3049: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_install' * environment, line 2488: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_install' * environment, line 2486: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_install' * environment, line 1046: Called distutils-r1_run_phase 'python_install' * environment, line 1481: Called python_install * environment, line 3203: Called distutils-r1_python_install * environment, line 1395: Called esetup.py 'install' '--skip-build' '--root=/var/tmp/portage/dev-python/numpy-1.16.5/image/_python2.7' * environment, line 1898: Called die * The specific snippet of code: * "${@}" || die "${die_args[@]}"; ... Expected Results: Emerged successfully. `emerge --info` output: Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.1/desktop, gcc-9.2.0, glibc-2.29-r7, 5.4.28-gentoo-x86_64 x86_64) ================================================================= System uname: Linux-5.4.28-gentoo-x86_64-x86_64-Intel-R-_Core-TM-_i5-7300HQ_CPU_@_2.50GHz-with-gentoo-2.6 KiB Mem: 7919060 total, 3090808 free KiB Swap: 8151036 total, 8151036 free Timestamp of repository gentoo: Thu, 16 Apr 2020 05:00:01 +0000 Head commit of repository gentoo: 7ffd39f547c65e3ff9a409ec1b205089fdbf474a sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.33.1 p2) 2.33.1 app-shells/bash: 4.4_p23-r1::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.17-r2::gentoo, 3.6.10-r1::gentoo, 3.7.7-r1::gentoo dev-util/cmake: 3.16.5::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.42.1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.33.1-r1::gentoo sys-devel/gcc: 9.2.0-r2::gentoo sys-devel/gcc-config: 2.2.1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r7::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/cache/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-march=native -O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="https://mirror.bytemark.co.uk/gentoo/ http://mirror.bytemark.co.uk/gentoo/ rsync://mirror.bytemark.co.uk/gentoo/ http://mirrors.evowise.com/gentoo/ https://mirrors.evowise.com/gentoo/ ftp://mirror.bytemark.co.uk/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli connman corefonts crypt cuda cups dbus djvu dri dts dvd dvdr elogind emboss encode exif flac fontconfig fortran gdbm gif gpm gtk iconv icu ipv6 jpeg lcms ldap libnotify libtirpc lm-sensors mad mng mp3 mp4 mpeg multilib ncurses nls nptl offensive ogg opengl openmp pam pango pcre pdf png policykit ppds qt5 readline sdl seccomp spell split-usr ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wifi wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel i965 nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, MAKEOPTS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 633236 [details] Build log.
I also get this breakage now :/
I can reproduce the issue on an ~amd64 system with python3.7.
Issue does not occur with dev-python/numpy-1.17.4-r2.
the same failure bumping locally to 1.16.6 :/
It is also caused by https://gitweb.gentoo.org/repo/gentoo.git/commit/eclass/distutils-r1.eclass?id=180fa85d7d00aea463c399f70348beaad9166eb7 like bug 717594
without "--skip-build" it compiles fine
OK, this is: https://github.com/numpy/numpy/issues/13265 Fixed by upstream: https://github.com/numpy/numpy/commit/9839f301d21c7dc6e9c64ca635e702c0943367f2 just tested and it works
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ec5de2845d7ccd00188c7a46a32e5a992d7ef03d commit ec5de2845d7ccd00188c7a46a32e5a992d7ef03d Author: Mike Gilbert <floppym@gentoo.org> AuthorDate: 2020-04-16 17:43:42 +0000 Commit: Mike Gilbert <floppym@gentoo.org> CommitDate: 2020-04-16 17:43:42 +0000 dev-python/numpy: fix build with recent distutils-r1 change Closes: https://bugs.gentoo.org/717706 Signed-off-by: Mike Gilbert <floppym@gentoo.org> ...-1.16.5-setup.py-install-skip-build-fails.patch | 23 ++++++++++++++++++++++ dev-python/numpy/numpy-1.16.5.ebuild | 1 + 2 files changed, 24 insertions(+)
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=81bcae35ca3f42bc92c1cbf977f5d08d4ea4409c commit 81bcae35ca3f42bc92c1cbf977f5d08d4ea4409c Author: Mike Gilbert <floppym@gentoo.org> AuthorDate: 2020-04-16 17:46:30 +0000 Commit: Mike Gilbert <floppym@gentoo.org> CommitDate: 2020-04-16 17:46:30 +0000 dev-python/numpy-python2: fix install with recent distutils-r1 change Bug: https://bugs.gentoo.org/717706 Signed-off-by: Mike Gilbert <floppym@gentoo.org> ...-1.16.5-setup.py-install-skip-build-fails.patch | 23 ++++++++++++++++++++++ .../numpy-python2/numpy-python2-1.16.5.ebuild | 1 + 2 files changed, 24 insertions(+)
*** Bug 717448 has been marked as a duplicate of this bug. ***
