Numpy fails to build on prefix. Build output: ``` >>> Emerging (1 of 1) dev-python/numpy-1.17.4::gentoo * numpy-1.17.4.zip BLAKE2B SHA512 size ;-) ... [ ok ] * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran >>> Unpacking source... >>> Unpacking numpy-1.17.4.zip to /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work >>> Source unpacked in /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work >>> Preparing source in /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4 ... * Applying numpy-1.17.4-no-hardcode-blas.patch ... patching file numpy/distutils/system_info.py [ ok ] >>> Source prepared. >>> Configuring source in /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4 ... >>> Source configured. >>> Compiling source in /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4 ... * python3_6: running distutils-r1_run_phase python_compile python3.6 setup.py build -j 1 config_fc --noopt --noarch --fcompiler=gnu95 blas_opt_info: system_info: NOT AVAILABLE accelerate_info: NOT AVAILABLE blas_info: customize UnixCCompiler customize UnixCCompiler C compiler: x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fomit-frame-pointer -O2 -pipe -O2 -pipe -fomit-frame-pointer -fno-strict-aliasing -fPIC creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp/portage creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4 creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp creating /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y compile options: '-I -I/srv/scratch/entrup/gentoo/usr/include -c' x86_64-pc-linux-gnu-gcc: /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/source.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fomit-frame-pointer /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/source.o -L/srv/scratch/entrup/gentoo/usr/lib64 -lblas -lcblas -o /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/tmp34092y0y/a.out FOUND: libraries = [['blas', 'cblas']] library_dirs = ['/srv/scratch/entrup/gentoo/usr/lib64'] include_dirs = ['', '/srv/scratch/entrup/gentoo/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] libraries = [['blas', 'cblas']] library_dirs = ['/srv/scratch/entrup/gentoo/usr/lib64'] include_dirs = ['', '/srv/scratch/entrup/gentoo/usr/include'] language = c lapack_opt_info: flame_info: customize UnixCCompiler libraries flame not found in ['/srv/scratch/entrup/gentoo/usr/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/'] NOT AVAILABLE lapack_info: customize UnixCCompiler FOUND: libraries = ['lapack'] library_dirs = ['/srv/scratch/entrup/gentoo/usr/lib64'] language = f77 FOUND: libraries = ['lapack', ['blas', 'cblas']] library_dirs = ['/srv/scratch/entrup/gentoo/usr/lib64'] language = c define_macros = [('NO_ATLAS_INFO', 1), ('HAVE_CBLAS', None)] include_dirs = ['', '/srv/scratch/entrup/gentoo/usr/include'] running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options Running from numpy source directory. /srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4/numpy/distutils/system_info.py:669: UserWarning: Optimized (vendor) Blas libraries are not found. Falls back to netlib Blas library which has worse performance. A better performance should be easily gained by switching Blas library. self.calc_info() /srv/scratch/entrup/gentoo/usr/lib64/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) error: second element of each tuple in 'libraries' must be a dictionary (build info) * ERROR: dev-python/numpy-1.17.4::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 125: Called src_compile * environment, line 3502: Called distutils-r1_src_compile * environment, line 1227: Called _distutils-r1_run_foreach_impl 'python_compile' * environment, line 456: Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile' * environment, line 2917: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 2223: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 2221: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' * environment, line 850: Called distutils-r1_run_phase 'python_compile' * environment, line 1220: Called python_compile * environment, line 2522: Called distutils-r1_python_compile 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95' * environment, line 1088: Called esetup.py 'build' '-j' '1' 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95' * environment, line 1626: Called die * The specific snippet of code: * "${@}" || die "${die_args[@]}"; * * If you need support, post the output of `emerge --info '=dev-python/numpy-1.17.4::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/numpy-1.17.4::gentoo'`. * The complete build log is located at '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/build.log'. * The ebuild environment file is located at '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/environment'. * Working directory: '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4' * S: '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4' >>> Failed to emerge dev-python/numpy-1.17.4, Log file: >>> '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/build.log' * Messages for package dev-python/numpy-1.17.4: * ERROR: dev-python/numpy-1.17.4::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 125: Called src_compile * environment, line 3502: Called distutils-r1_src_compile * environment, line 1227: Called _distutils-r1_run_foreach_impl 'python_compile' * environment, line 456: Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile' * environment, line 2917: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 2223: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' * environment, line 2221: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' * environment, line 850: Called distutils-r1_run_phase 'python_compile' * environment, line 1220: Called python_compile * environment, line 2522: Called distutils-r1_python_compile 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95' * environment, line 1088: Called esetup.py 'build' '-j' '1' 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95' * environment, line 1626: Called die * The specific snippet of code: * "${@}" || die "${die_args[@]}"; * * If you need support, post the output of `emerge --info '=dev-python/numpy-1.17.4::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/numpy-1.17.4::gentoo'`. * The complete build log is located at '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/build.log'. * The ebuild environment file is located at '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/temp/environment'. * Working directory: '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4' * S: '/srv/scratch/entrup/gentoo/var/tmp/portage/dev-python/numpy-1.17.4/work/numpy-1.17.4' ``` Reproducible: Always Steps to Reproduce: 1. emerge numpy[lapack]
Created attachment 598932 [details] environment
Is not a problem of prefix. I have the same error on a local gentoo machine.
Also experiencing this. Note that numpy-1.16.5 builds fine, but numpy-1.17.4 does not.
Not sure how it affects other configurations but reverting a hunk from numpy-1.17.4-no-hardcode-blas.patch by this patch worked for me. diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py index 09db18e..c6370be 100644 --- a/numpy/distutils/system_info.py +++ b/numpy/distutils/system_info.py @@ -1818,7 +1818,7 @@ class blas_info(system_info): lib = self.get_cblas_libs(info) if lib is not None: info['language'] = 'c' - info['libraries'] = [lib] + info['libraries'] = lib info['define_macros'] = [('HAVE_CBLAS', None)] self.set_info(**info)
+1, also experiencing this.
Same problem here and I need the lapack use flag to install scipy.
Same problem here. I edited the file numpy-1.17.4-no-hardcode-blas.patch and just deleted the last entry: @@ -1842,7 +1818,7 @@ class blas_info(system_info): lib = self.get_cblas_libs(info) if lib is not None: info['language'] = 'c' - info['libraries'] = lib + info['libraries'] = [lib] info['define_macros'] = [('HAVE_CBLAS', None)] self.set_info(**info) as this is essentially what https://bugs.gentoo.org/702328#c4 was undoing.
fixed via https://bugs.gentoo.org/700848 (same issue)
*** This bug has been marked as a duplicate of bug 700848 ***
