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Bug 681640 - sci-biology/mothur-1.27.0-r1 : classifyseqscommand.cpp:571:17: error: MPI_MODE_CREATE was not declared in this scope
Summary: sci-biology/mothur-1.27.0-r1 : classifyseqscommand.cpp:571:17: error: MPI_MOD...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-03-24 10:44 UTC by Toralf Förster
Modified: 2019-03-24 10:44 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.28 KB, text/plain)
2019-03-24 10:44 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,77.49 KB, text/plain)
2019-03-24 10:44 UTC, Toralf Förster
Details
environment (environment,88.22 KB, text/plain)
2019-03-24 10:44 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,11.41 KB, application/x-bzip)
2019-03-24 10:44 UTC, Toralf Förster
Details
sci-biology:mothur-1.27.0-r1:20190323-225202.log (sci-biology:mothur-1.27.0-r1:20190323-225202.log,11.85 KB, text/plain)
2019-03-24 10:44 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,22.75 KB, application/x-bzip)
2019-03-24 10:44 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2019-03-24 10:44:20 UTC
mpicxx -O2 -pipe -march=native -DRELEASE_DATE="\"8/8/2012\"" -DVERSION="\"1.27.0\"" -DUSE_READLINE -DUSE_MPI -I.  -DBIT_VERSION  -c -o classifyseqscommand.o classifyseqscommand.cpp
classifyseqscommand.cpp: In member function ‘virtual int ClassifySeqsCommand::execute()’:
classifyseqscommand.cpp:571:17: error: ‘MPI_MODE_CREATE’ was not declared in this scope
     int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY;
                 ^~~~~~~~~~~~~~~
classifyseqscommand.cpp:571:17: note: suggested alternative: ‘MPI_MODE_NOPUT’

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-no-multilib_libressl_20190322-132156

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-8.3.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems)
  [3]   ruby26 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.32.0 *



emerge -qpvO sci-biology/mothur
[ebuild  N    ] sci-biology/mothur-1.27.0-r1  USE="mpi readline"
Comment 1 Toralf Förster gentoo-dev 2019-03-24 10:44:23 UTC
Created attachment 570574 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-03-24 10:44:26 UTC
Created attachment 570576 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2019-03-24 10:44:28 UTC
Created attachment 570578 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2019-03-24 10:44:31 UTC
Created attachment 570580 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2019-03-24 10:44:34 UTC
Created attachment 570582 [details]
sci-biology:mothur-1.27.0-r1:20190323-225202.log
Comment 6 Toralf Förster gentoo-dev 2019-03-24 10:44:37 UTC
Created attachment 570584 [details]
temp.tbz2