Created attachment 419008 [details] emerge-info The install step for lapack-reference fails, stating it can't create a directory, If I manually create the directory prior to the emerge the install fails because the directory already exists. * ACCESS DENIED: mkdir: /etc/env.d/alternatives/lapack/reference mkdir: cannot create directory ‘/etc/env.d/alternatives/lapack/reference’: Permission denied !!! Error: Failed to create /etc/env.d/alternatives/lapack/reference Call stack: * alternatives_do_add (alternatives-common.bash:288) * do_add (alternatives.eselect:147) * check_do (core.bash:24) * do_action (core.bash:105) * main (eselect:309) exiting * ERROR: sci-libs/lapack-reference-3.6.0-r1::science failed (install phase): * (no error message) * * Call stack: * ebuild.sh, line 90: Called src_install * environment, line 4642: Called numeric-int64-multibuild_install_alternative 'lapack' 'reference' * environment, line 3400: Called numeric-int64-multibuild_foreach_int_abi 'pc_install' 'lapack' 'reference' * environment, line 3370: Called multibuild_foreach_variant 'numeric-int64-multibuild_multilib_wrapper' 'pc_install' 'lapack' 'reference' * environment, line 2868: Called _multibuild_run 'numeric-int64-multibuild_multilib_wrapper' 'pc_install' 'lapack' 'reference' * environment, line 2866: Called numeric-int64-multibuild_multilib_wrapper 'pc_install' 'lapack' 'reference' * environment, line 3409: Called pc_install 'lapack' 'reference' * environment, line 3397: Called alternatives_for 'lapack' 'reference' '0' '/usr/lib64/pkgconfig/lapack.pc' 'reflapack.pc' * environment, line 865: Called die * The specific snippet of code: * ALTERNATIVESDIR_ROOT="${D%/}" eselect alternatives add ${@} || die; * * If you need support, post the output of `emerge --info '=sci-libs/lapack-reference-3.6.0-r1::science'`, * the complete build log and the output of `emerge -pqv '=sci-libs/lapack-reference-3.6.0-r1::science'`. * The complete build log is located at '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/work/lapack-3.6.0' * S: '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/work/lapack-3.6.0' * --------------------------- ACCESS VIOLATION SUMMARY --------------------------- * LOG FILE: "/var/log/sandbox/sandbox-11574.log" * VERSION 1.0 FORMAT: F - Function called FORMAT: S - Access Status FORMAT: P - Path as passed to function FORMAT: A - Absolute Path (not canonical) FORMAT: R - Canonical Path FORMAT: C - Command Line F: mkdir S: deny P: reference A: /etc/env.d/alternatives/lapack/reference R: /etc/env.d/alternatives/lapack/reference C: mkdir -p /etc/env.d/alternatives/lapack/reference * -------------------------------------------------------------------------------- >>> Failed to emerge sci-libs/lapack-reference-3.6.0-r1, Log file: >>> '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/temp/build.log' * Messages for package sci-libs/lapack-reference-3.6.0-r1: * ERROR: sci-libs/lapack-reference-3.6.0-r1::science failed (install phase): * (no error message) * * Call stack: * ebuild.sh, line 90: Called src_install * environment, line 4642: Called numeric-int64-multibuild_install_alternative 'lapack' 'reference' * environment, line 3400: Called numeric-int64-multibuild_foreach_int_abi 'pc_install' 'lapack' 'reference' * environment, line 3370: Called multibuild_foreach_variant 'numeric-int64-multibuild_multilib_wrapper' 'pc_install' 'lapack' 'reference' * environment, line 2868: Called _multibuild_run 'numeric-int64-multibuild_multilib_wrapper' 'pc_install' 'lapack' 'reference' * environment, line 2866: Called numeric-int64-multibuild_multilib_wrapper 'pc_install' 'lapack' 'reference' * environment, line 3409: Called pc_install 'lapack' 'reference' * environment, line 3397: Called alternatives_for 'lapack' 'reference' '0' '/usr/lib64/pkgconfig/lapack.pc' 'reflapack.pc' * environment, line 865: Called die * The specific snippet of code: * ALTERNATIVESDIR_ROOT="${D%/}" eselect alternatives add ${@} || die; * * If you need support, post the output of `emerge --info '=sci-libs/lapack-reference-3.6.0-r1::science'`, * the complete build log and the output of `emerge -pqv '=sci-libs/lapack-reference-3.6.0-r1::science'`. * The complete build log is located at '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/work/lapack-3.6.0' * S: '/var/tmp/portage/sci-libs/lapack-reference-3.6.0-r1/work/lapack-3.6.0'
are you updating from 3.6.0? That version was broken. try eselect alternatives remove lapack reference and reemerge lapack-reference
(In reply to Justin Lecher from comment #1) > are you updating from 3.6.0? That version was broken. > > try > > eselect alternatives remove lapack reference > > and reemerge lapack-reference I uninstalled lapack-reference earlier while trying to troubleshoot it, so right now my system shouldn't have any version present. It looks like I'm trying to emerge in 3.6.0. Here's my emerge output: # emerge -avDN lapack-reference These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild N ~] sci-libs/lapack-reference-3.6.0-r1:0/3.6.0::science USE="deprecated -int64 -static-libs {-test} -xblas" ABI_X86="(64) -32 (-x32)" 0 KiB I ran 'layman -S' and 'emaint -A sync' prior to emerging. Am I picking up the wrong version? Also, I tried 'eselect alternatives remove lapack reference' and got an error: # eselect alternatives remove lapack reference /usr/share/eselect/libs/alternatives-common.bash: line 362: einfo: command not found # equery l eselect * Searching for eselect ... [I--] [??] app-admin/eselect-1.4.5-r102:0
You want to sync that and upgrade to eselect-1.4.5-r103.
(In reply to Francois Bissey from comment #3) > You want to sync that and upgrade to eselect-1.4.5-r103. That was the issue. After upgrading eselect I was able to install lapack-reference. Thank you for your help.
commit e46d6814190a2905159ff9fadb03f2928df9f4c8 Author: Justin Lecher <jlec@gentoo.org> Date: Mon Dec 14 08:52:53 2015 +0100 Raise eselect version requirement Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563292 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568038 Signed-off-by: Justin Lecher <jlec@gentoo.org>
