>>> Unpacking source... >>> Unpacking lapack-3.5.0.tgz to /var/tmp/portage/sci-libs/lapack-reference-3.5.0/work >>> Source unpacked in /var/tmp/portage/sci-libs/lapack-reference-3.5.0/work >>> Preparing source in /var/tmp/portage/sci-libs/lapack-reference-3.5.0/work/lapack-3.5.0 ... !!! Error: Action files unknown exiting Must specify package names on the command line ^[[31;01m*^[[0m ERROR: sci-libs/lapack-reference-3.5.0::science failed (prepare phase): ^[[31;01m*^[[0m lapack-reference requires the pkgbuild module ^[[31;01m*^[[0m ^[[31;01m*^[[0m Call stack: ^[[31;01m*^[[0m ebuild.sh, line 90: Called src_prepare ^[[31;01m*^[[0m environment, line 3440: Called fortran-int64_ensure_blas ^[[31;01m*^[[0m environment, line 1724: Called die Reproducible: Always # emerge --info sci-libs/lapack-reference sci-libs/blas-reference virtual/blas app-eselect/eselect-blas Portage 2.2.23 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop/plasma/systemd, gcc-4.9.3, glibc-2.21-r1, 4.2.2-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.2.2-gentoo-x86_64-8G-with-gentoo-2.2 KiB Mem: 15381444 total, 7318852 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sat, 17 Oct 2015 08:45:01 +0000 sh bash 4.3_p42 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 ccache version 3.2.4 [disabled] app-shells/bash: 4.3_p42::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.22.0::gentoo dev-lang/python: 2.7.10::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo dev-util/ccache: 3.2.4::gentoo dev-util/cmake: 3.3.2-r1::gentoo dev-util/pkgconfig: 0.29::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/sandbox: 2.9::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.2::gentoo (virtual/os-headers) sys-libs/glibc: 2.21-r1::gentoo Repositories: gentoo location: /var/cache/portage/gentoo sync-type: rsync sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage priority: -1000 science location: /var/lib/layman/science sync-type: laymansync sync-uri: git://anongit.gentoo.org/proj/sci.git masters: gentoo priority: 50 aegypius location: /var/lib/layman/aegypius sync-type: laymansync sync-uri: git://github.com/aegypius/overlay.git masters: gentoo priority: 50 kde location: /var/lib/layman/kde sync-type: laymansync sync-uri: git://anongit.gentoo.org/proj/kde.git masters: gentoo priority: 50 sage-on-gentoo location: /var/lib/layman/sage-on-gentoo sync-type: laymansync sync-uri: git://github.com/cschwan/sage-on-gentoo.git masters: gentoo science priority: 50 local location: /var/cache/portage/local masters: gentoo priority: 100 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-pipe -O2 -march=bdver3" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /usr/share/themes/oxygen-gtk/gtk-3.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-pipe -O2 -march=bdver3" DISTDIR="/var/cache/portage/distfiles" EMERGE_DEFAULT_OPTS="--keep-going --nospinner" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildsyspkg compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org" LANG="en_GB.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu" MAKEOPTS="-j5" PKGDIR="/var/cache/portage/packages" PORTAGE_COMPRESS="xz" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac aacplus aacs acl acpi alsa amd64 appindicator audit avahi bash-completion bdplus berkdb bluetooth bluray branding bzip2 cairo caps cdda cddb cdio cdr celt cjk cli conntrack cracklib crypt cups cxx dbus declarative dirac dri dts dvb dvd dvdr egl emboss encode exif fam fax ffmpeg firefox flac fontconfig fortran gdbm gif glamor gles gles2 gmp gpm gstreamer gtk ibus iconv ipv6 jpeg jpeg2k kde kipi ladspa latex lcms ldap libnotify libsecret lua_target_lua5-2 lv2 lz4 lzma lzo mad mmx mmxext mng modemmanager modplug modules mp3 mp4 mpeg mplayer mtp multilib multitarget mysql ncurses netlink networkmanager nls nptl ogg openal opencl openexr opengl openmax openmp opus pam pango pch pcre pdf phonon plasma png policykit ppds pulseaudio qml qt3support qt4 qt5 readline rtmp samba scanner schroedinger sctp sdl seccomp semantic-desktop session speex spell sse sse2 ssl startup-notification subversion svg systemd tcpd theora threads tiff truetype udev udisks unicode upnp upnp-av upower usb v4l vaapi vdpau vorbis vpx wavpack wayland webp widgets x264 x265 xattr xcb xcomposite xinerama xml xrandr xscreensaver xv xvid xz zeroconf zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="stage words flow sheets gemini" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="3dnow 3dnowext mmx mmxext sse sse2 sse3" DRACUT_MODULES="btrfs caps systemd" ELIBC="glibc" ENLIGHTENMENT_MODULES="*" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="coreboot efi-64 pc" INPUT_DEVICES="evdev joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en en_GB ar fa" LIRC_DEVICES="devinput" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu radeon radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= sci-libs/lapack-reference-3.2.1-r1::gentoo was built with the following: USE="(policykit) -doc" ABI_X86="64" sci-libs/blas-reference-20070226-r2::gentoo was built with the following: USE="(policykit) -doc" ABI_X86="64" virtual/blas-2.1-r3::science was built with the following: USE="-doc -int64" ABI_X86="64" CHOST="" app-eselect/eselect-blas-0.1::gentoo was built with the following: USE="(policykit)" ABI_X86="64"
Created attachment 414768 [details] build.log
Do you have blas eselected?
(In reply to Justin Lecher from comment #2) > Do you have blas eselected? # eselect blas list Installed BLAS for library directory lib64 [1] reference *
commit bc36b5406f2bb289a3920ef13d50853a567bc83d Author: Justin Lecher <jlec@gentoo.org> Date: Sat Sep 19 09:14:19 2015 +0200 Large fix of numeric code fortran-int64.eclass code has been splitted into numeric-int64-multibuild.eclass, fortran-2.eclass and numeric.eclass. Gentoo: https://bugs.gentoo.org/show_bug.cgi?id=563292 https://bugs.gentoo.org/show_bug.cgi?id=551764 https://bugs.gentoo.org/show_bug.cgi?id=555302 Github: resolves gentoo-science/sci#438 resolves gentoo-science/sci#443 resolves gentoo-science/sci#447 resolves gentoo-science/sci#450 resolves gentoo-science/sci#467 resolves gentoo-science/sci#492 resolves gentoo-science/sci#507 resolves gentoo-science/sci#508 resolves gentoo-science/sci#522 Signed-off-by: Justin Lecher <jlec@gentoo.org>
I still get the same error ----------------------- >>> Preparing source in /var/tmp/portage/sci-libs/lapack-reference-3.5.0/work/lapack-3.5.0 ... !!! Error: Action files unknown exiting readlink: missing operand Try 'readlink --help' for more information. Please specify at least one package name on the command line. ----------------------- And by the way, after the yesterday's update I cannot 'eselect' any BLAS alternative since they are not listed in 'eselect blas list'. Looks like eselect just does not "see" them.
(In reply to Vladimir from comment #5) > I still get the same error > > ----------------------- > >>> Preparing source in /var/tmp/portage/sci-libs/lapack-reference-3.5.0/work/lapack-3.5.0 ... > !!! Error: Action files unknown > exiting > readlink: missing operand > Try 'readlink --help' for more information. > Please specify at least one package name on the command line. > ----------------------- > > And by the way, after the yesterday's update I cannot 'eselect' any BLAS > alternative since they are not listed in 'eselect blas list'. Looks like > eselect just does not "see" them. do you have eselect-blas installed? if so, it doesn't work. You need to install eselect from the science overlay and not eselect-blas.
(In reply to Justin Lecher from comment #6) > > do you have eselect-blas installed? if so, it doesn't work. You need to > install eselect from the science overlay and not eselect-blas. Yes. This was the case. I removed 'eselect-blas' and now it builds fine. Thank you! This also seems to be true for 'eselect-cblas'.
commit 9d1c943cdf094a96ece61114ef26cc0c5ec4f8d6 Author: Justin Lecher <jlec@gentoo.org> Date: Sun Nov 29 10:45:07 2015 +0100 app-admin/eselect: Block app-eselect/eselect-{blas,lapack} Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563292 Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org> commit 1414229db7dd1693c06825f2d1e911eff5aac042 Author: Justin Lecher <jlec@gentoo.org> Date: Sun Nov 29 10:41:48 2015 +0100 virtual/lapack: Block app-eselect/eselect-lapack Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563292 Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org> commit 89e4b2ab84e5dce42c2c3f2b051705324e238862 Author: Justin Lecher <jlec@gentoo.org> Date: Sun Nov 29 10:40:11 2015 +0100 virtual/blas: Block app-eselect/eselect-blas Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563292 Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e46d6814190a2905159ff9fadb03f2928df9f4c8 Author: Justin Lecher <jlec@gentoo.org> Date: Mon Dec 14 08:52:53 2015 +0100 Raise eselect version requirement Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563292 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568038 Signed-off-by: Justin Lecher <jlec@gentoo.org>
