'emerge world' fails with: root@impala:/usr/local/portage/sci-biology(314)# emerge -uvND world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] sci-biology/embassy-domalign-0.1.0-r5 [0.1.0-r4] USE="X mysql%* pdf%* png postgres%* -static-libs%" 0 kB [0=>1] ... >>> Starting parallel fetch >>> Emerging (1 of 15) sci-biology/embassy-domalign-0.1.0-r5 from science * Fetching files in the background. To view fetch progress, run * `tail -f /var/log/emerge-fetch.log` in another terminal. !!! Fetched file: embassy-domalign-0.1.0-r5.tar.gz VERIFY FAILED! !!! Reason: Insufficient data for checksum verification !!! Got: !!! Expected: MD5 RMD160 SHA1 SHA256 SHA512 WHIRLPOOL * Fetch failed for 'sci-biology/embassy-domalign-0.1.0-r5', Log file: * '/var/tmp/portage/sci-biology/embassy-domalign-0.1.0-r5/temp/build.log' There is not any embassy-domalign-* in /usr/portage/distfiles/: root@impala:/usr/local/portage/sci-biology(316)# ll /usr/portage/distfiles/embassy-domalign-* /bin/ls: cannot access /usr/portage/distfiles/embassy-domalign-*: No such file or directory
Created attachment 296853 [details] An embassy-domalign ebuild which solved the issue. The SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.0.tar.gz" was added to the ebuild and the patch was disabled, because it does work. So the question remains, whether this is embassy-domalign-0.1.0-r5.ebuild or embassy-domalign-0.1.0.ebuild
*** Bug 395895 has been marked as a duplicate of this bug. ***
# Justin Lecher <jlec@gentoo.org> (20 Feb 2012) # They are broken in one or the other way # Need to be bumped to emboss-6.4.0 sci-biology/emboss::science sci-biology/embassy::science sci-biology/embassy-cbstools::science sci-biology/embassy-domainatrix::science sci-biology/embassy-domalign::science sci-biology/embassy-domsearch::science sci-biology/embassy-emnu::science sci-biology/embassy-esim4::science sci-biology/embassy-hmmer::science sci-biology/embassy-iprscan::science sci-biology/embassy-mse::science sci-biology/embassy-phylipnew::science sci-biology/embassy-signature::science sci-biology/embassy-structure::science sci-biology/embassy-topo::science sci-biology/embassy-vienna::science