Bug 390825 – dev-lang/R-2.10.1 extra/xdr - ./rpc/types.h:63:14: error: conflicting types for 'malloc'

• Status: RESOLVED DUPLICATE of bug 378439
• Product: Gentoo Linux

[Description pisto 2011-11-17 12:19:12 UTC]

dev-lang/R-2.10.1 extra/xdr compile problem

Reproducible: Always

Steps to Reproduce:
1.emerge R
Actual Results:  
emerge failed

Expected Results:  
Software should be sucessfuly installed

Found a workaround: #define _X86_, and comment extern char *malloc();
 in /var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr/rpc/types.h


Portage 2.1.10.11 (default/linux/x86/10.0, gcc-4.5.3, glibc-2.14-r0, 2.6.32-gentoo-r29 i686)
=================================================================
System uname: Linux-2.6.32-gentoo-r29-i686-Intel-R-_Pentium-R-_CPU_E6700_@_3.20GHz-with-gentoo-2.0.3
Timestamp of tree: Tue, 15 Nov 2011 18:15:01 +0000
ccache version 2.4 [disabled]
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.6.6-r2, 2.7.1-r1, 3.1.3-r1
dev-util/ccache:          2.4-r9
dev-util/cmake:           2.8.4-r1
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:       2.20.1-r1
sys-devel/gcc:            4.4.5, 4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.36.1 (virtual/os-headers)
sys-libs/glibc:           2.14
Repositories: gentoo wirelay sunrise pure-funtoo x-portage
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=prescott -O2 -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=prescott -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://mirror.yandex.ru/gentoo-distfiles/"
LANG="ru_RU.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="ru"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/wirelay /var/lib/layman/sunrise /var/lib/layman/pure-funtoo /usr/local/portage"
SYNC="rsync://mirror.yandex.ru/gentoo-portage"
USE="X acl berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 jpeg modules mudflap ncurses nls nptl nptlonly openmp pam pcre png pppd readline session ssl svg sysfs tcpd truetype unicode x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ru" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 pisto 2011-11-17 12:22:20 UTC]

Created attachment 292879 [details]
build log

[Comment 2 Jeroen Roovers (RETIRED) 2011-11-17 15:48:01 UTC]

Comment on attachment 292879 [details]
build log

Please attach a build log created with LC_ALL=C.

[Comment 3 pisto 2011-11-17 16:25:34 UTC]

Created attachment 292911 [details]
build log

[Comment 4 Jeroen Roovers (RETIRED) 2011-11-17 17:15:04 UTC]

*** This bug has been marked as a duplicate of bug 378439 ***