* Package: dev-lang/R-2.10.1  * Repository: gentoo  * Maintainer: sci-mathematics@gentoo.org  * USE: X elibc_glibc jpeg kernel_linux nls png readline userland_GNU x86  * FEATURES: sandbox shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Unpacking source... >>> Unpacking R-2.10.1.tar.gz to /var/tmp/portage/dev-lang/R-2.10.1/work >>> Source unpacked in /var/tmp/portage/dev-lang/R-2.10.1/work shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Preparing source in /var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1 ... >>> Source prepared. shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Configuring source in /var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1 ... * econf: updating R-2.10.1/tools/config.sub with /usr/share/gnuconfig/config.sub * econf: updating R-2.10.1/tools/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-rpath --enable-R-profiling --enable-memory-profiling --enable-R-shlib --enable-linux-lfs --with-system-zlib --with-system-bzlib --with-system-pcre --with-blas=-lblas --docdir=/usr/share/doc/R-2.10.1 rdocdir=/usr/share/doc/R-2.10.1 --enable-nls --disable-threads --without-lapack --without-tcltk --with-jpeglib --with-recommended-packages --with-libpng --with-readline --without-cairo --with-x configure: loading site script /usr/share/config.site configure: loading site script /usr/share/crossdev/include/site/linux configure: loading site script /usr/share/crossdev/include/site/i686-linux-gnu checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu loading site script 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works... yes checking whether Java compiler works for version 1.4... yes checking whether Java interpreter works... yes checking Java environment... /opt/icedtea6-bin-1.10.3/jre checking for cached Java settings... no checking whether JNI programs can be compiled... yes checking for i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether i686-pc-linux-gnu-gfortran accepts -g... yes checking for i686-pc-linux-gnu-gfortran... 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(cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 2.4.3, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... (cached) yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for shared library run path origin... done checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile.in config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/bzip2/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/pcre/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/extra/xz/Makefile config.status: creating src/extra/zlib/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/modules/vfonts/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/Rdiff config.status: creating src/scripts/Rprof config.status: creating src/scripts/Sd2Rd config.status: creating src/scripts/build config.status: creating src/scripts/check config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tests/Native/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing po-directories commands config.status: creating po/POTFILES config.status: creating po/Makefile config.status: executing stamp-h commands R is now configured for i686-pc-linux-gnu Source directory: . Installation directory: /usr C compiler: i686-pc-linux-gnu-gcc -std=gnu99 -march=prescott -O2 -pipe -fomit-frame-pointer Fortran 77 compiler: i686-pc-linux-gnu-gfortran C++ compiler: i686-pc-linux-gnu-g++ -march=prescott -O2 -pipe -fomit-frame-pointer Fortran 90/95 compiler: i686-pc-linux-gnu-gfortran Obj-C compiler: i686-pc-linux-gnu-gcc Interfaces supported: X11 External libraries: readline, BLAS(generic), ICU, lzma Additional capabilities: PNG, JPEG, TIFF, NLS Options enabled: shared R library, R profiling, memory profiling, Java Recommended packages: yes configure: WARNING: you cannot build DVI versions of the R manuals configure: WARNING: you cannot build DVI versions of all the help pages configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of all the help pages >>> Source configured. shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Compiling source in /var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1 ... make -j5 make[1]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/m4' make[1]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/tools' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/tools' make[1]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/doc' make[2]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/doc/html' make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/doc/html' make[2]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/doc/manual' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/doc/manual' make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/doc' make[1]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/etc' make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/etc' make[1]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/share' make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/share' make[1]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src' make[2]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/scripts' creating src/scripts/R.fe make[3]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/scripts' make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/scripts' make[2]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/include' mkdir -p -- ../../include make[3]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/include/R_ext' make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/include' make[2]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra' make[3]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/tre' make[3]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr' making xdr.d from xdr.c make[4]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/tre' making regcomp.d from regcomp.c making xdr_float.d from xdr_float.c making xdr_mem.d from xdr_mem.c making regerror.d from regerror.c making xdr_stdio.d from xdr_stdio.c making regexec.d from regexec.c make[4]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr' making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making xdr_stdio.d from xdr_stdio.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr' make[4]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr' i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c xdr.c -o xdr.o making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c xdr_float.c -o xdr_float.o making xmalloc.d from xmalloc.c i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o In file included from xdr_float.c:57:0: ./rpc/types.h:63:14: warning: conflicting types for built-in function 'malloc' i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o In file included from xdr.c:61:0: ./rpc/types.h:63:14: error: conflicting types for 'malloc' xdr_float.c: In function 'xdr_float': xdr_float.c:115:21: error: storage size of 'is' isn't known xdr_float.c:116:20: error: storage size of 'vs' isn't known xdr_float.c:126:8: error: dereferencing pointer to incomplete type xdr_float.c:127:21: error: 'sgl_limits' undeclared (first use in this function) xdr_float.c:127:21: note: each undeclared identifier is reported only once for each function it appears in xdr_float.c:128:34: error: invalid application of 'sizeof' to incomplete type 'struct sgl_limits' xdr_float.c:129:12: error: increment of pointer to unknown structure xdr_float.c:129:4: error: arithmetic on pointer to an incomplete type xdr_float.c:130:28: error: dereferencing pointer to incomplete type xdr_float.c:131:19: error: dereferencing pointer to incomplete type xdr_float.c:132:25: error: dereferencing pointer to incomplete type xdr_float.c:133:13: error: dereferencing pointer to incomplete type xdr_float.c:137:21: error: 'VAX_SNG_BIAS' undeclared (first use in this function) xdr_float.c:137:36: error: 'IEEE_SNG_BIAS' undeclared (first use in this function) xdr_float.c:152:34: error: invalid application of 'sizeof' to incomplete type 'struct sgl_limits' xdr_float.c:153:12: error: increment of pointer to unknown structure xdr_float.c:153:4: error: arithmetic on pointer to an incomplete type xdr_float.c:154:22: error: dereferencing pointer to incomplete type xdr_float.c:155:24: error: dereferencing pointer to incomplete type xdr_float.c:156:5: error: dereferencing pointer to incomplete type xdr_float.c:156:15: error: dereferencing pointer to incomplete type xdr_float.c:160:6: error: dereferencing pointer to incomplete type xdr_float.c:161:6: error: dereferencing pointer to incomplete type xdr_float.c:162:6: error: dereferencing pointer to incomplete type xdr_float.c:164:6: error: dereferencing pointer to incomplete type xdr_float.c: In function 'xdr_double': xdr_float.c:221:21: error: storage size of 'id' isn't known xdr_float.c:222:20: error: storage size of 'vd' isn't known xdr_float.c:233:8: error: dereferencing pointer to incomplete type xdr_float.c:234:21: error: 'dbl_limits' undeclared (first use in this function) xdr_float.c:235:34: error: invalid application of 'sizeof' to incomplete type 'struct dbl_limits' xdr_float.c:236:12: error: increment of pointer to unknown structure xdr_float.c:236:4: error: arithmetic on pointer to an incomplete type xdr_float.c:237:28: error: dereferencing pointer to incomplete type xdr_float.c:238:25: error: dereferencing pointer to incomplete type xdr_float.c:239:25: error: dereferencing pointer to incomplete type xdr_float.c:240:25: error: dereferencing pointer to incomplete type xdr_float.c:241:19: error: dereferencing pointer to incomplete type xdr_float.c:242:13: error: dereferencing pointer to incomplete type xdr_float.c:246:21: error: 'VAX_DBL_BIAS' undeclared (first use in this function) xdr_float.c:246:36: error: 'IEEE_DBL_BIAS' undeclared (first use in this function) xdr_float.c:248:3: warning: implicit declaration of function 'MASK' xdr_float.c:273:34: error: invalid application of 'sizeof' to incomplete type 'struct dbl_limits' xdr_float.c:274:12: error: increment of pointer to unknown structure xdr_float.c:274:4: error: arithmetic on pointer to an incomplete type xdr_float.c:275:28: error: dereferencing pointer to incomplete type xdr_float.c:276:25: error: dereferencing pointer to incomplete type xdr_float.c:277:19: error: dereferencing pointer to incomplete type xdr_float.c:278:13: error: dereferencing pointer to incomplete type make[4]: *** [xdr.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: *** [xdr_float.o] Error 1 In file included from xdr_stdio.c:93:0: ./rpc/types.h:63:14: warning: conflicting types for built-in function 'malloc' make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/tre' In file included from xdr_mem.c:103:0: ./rpc/types.h:63:14: error: conflicting types for 'malloc' make[4]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/tre' i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c regcomp.c -o regcomp.o xdr_mem.c: In function 'xdrmem_getlong': xdr_mem.c:161:2: warning: implicit declaration of function 'ntohl' i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c regerror.c -o regerror.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c regexec.c -o regexec.o xdr_stdio.c: In function 'xdrstdio_getlong': xdr_stdio.c:160:2: warning: implicit declaration of function 'ntohl' make[4]: *** [xdr_mem.o] Error 1 i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-ast.c -o tre-ast.o make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr' make[3]: *** [R] Error 2 make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/xdr' make[2]: *** [make.xdr] Error 2 make[2]: *** Waiting for unfinished jobs.... i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-compile.c -o tre-compile.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-mem.c -o tre-mem.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-parse.c -o tre-parse.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-stack.c -o tre-stack.o i686-pc-linux-gnu-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -march=prescott -O2 -pipe -fomit-frame-pointer -fvisibility=hidden -c xmalloc.c -o xmalloc.o rm -f libtre.a ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o i686-pc-linux-gnu-ranlib libtre.a make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/tre' make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra/tre' make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/extra' make[1]: *** [R] Error 1 make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src' make: *** [R] Error 1 emake failed * ERROR: dev-lang/R-2.10.1 failed (compile phase): * emake failed * * Call stack: * ebuild.sh, line 56: Called src_compile * environment, line 2987: Called die * The specific snippet of code: * emake || die "emake failed"; * * If you need support, post the output of 'emerge --info =dev-lang/R-2.10.1', * the complete build log and the output of 'emerge -pqv =dev-lang/R-2.10.1'. * The complete build log is located at '/var/tmp/portage/dev-lang/R-2.10.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-lang/R-2.10.1/temp/environment'. * S: '/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1' shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory