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Bug 312609 - [science overlay] sci-mathematics/scilab-5.2.1 fails to compile due to undefined references
Summary: [science overlay] sci-mathematics/scilab-5.2.1 fails to compile due to undefi...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: High normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL:
Whiteboard: Science overlay
Keywords:
Depends on:
Blocks:
 
Reported: 2010-04-01 13:09 UTC by Groggy
Modified: 2012-05-25 22:06 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (build.log,23.62 KB, text/plain)
2010-04-01 13:11 UTC, Groggy
Details

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Description Groggy 2010-04-01 13:09:58 UTC
Emerge scilab-5.2.1 fails when linking some library :

libtool: link: x86_64-pc-linux-gnu-gcc -march=core2 -O2 -pipe -DNDEBUG -I./modules/core/includes/ -I./libs/MALLOC/includes/ -I./modules/localization/includes/ -Wl,-O1 -Wl,--sort-common -o .libs/scilab-bin scilab_bin-mainscic.o  -Wl,--as-needed ./modules/shell/.libs/libscishell.so -L/usr/lib64 ./modules/core/.libs/libscicore.so ./modules/completion/.libs/libscicompletion.so ./modules/localization/.libs/libscilocalization.so ./modules/io/.libs/libsciio.so -L/usr/lib ./modules/.libs/libscilab.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/call_scilab/.libs/libscicall_scilab.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/double/.libs/libscidouble.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/boolean/.libs/libsciboolean.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/intersci/.libs/libsciintersci.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/localization/.libs/libscilocalization.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/special_functions/.libs/libscispecial_functions.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/statistics/.libs/libscistatistics.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/time/.libs/libscitime.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/windows_tools/.libs/libsciwindows_tools.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/pvm/.libs/libscipvm.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/sparse/.libs/libscisparse.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/io/.libs/libsciio.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/polynomials/.libs/libscipolynomials.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/cacsd/.libs/libscicacsd.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/mexlib/.libs/libmx.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/mexlib/.libs/libmat.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/differential_equations/.libs/libscidifferential_equations.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/mexlib/.libs/libmex.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/data_structures/.libs/libscidata_structures.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/integer/.libs/libsciinteger.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/linear_algebra/.libs/libscilinear_algebra.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/dynamic_link/.libs/libscidynamic_link.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/completion/.libs/libscicompletion.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/fftw/.libs/libscifftw.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/hdf5/.libs/libscihdf5.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/functions/.libs/libscifunctions.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/graphics/.libs/libscigraphics.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/libs/hashtable/.libs/libscihashtable.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/tclsci/.libs/libscitclsci.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/gui/.libs/libscigui.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/renderer/.libs/libscirenderer.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/libs/doublylinkedlist/.libs/libscidoublylinkedlist.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/graphic_export/.libs/libscigraphic_export.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/console/.libs/libsciconsole.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/shell/.libs/libscishell.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/action_binding/.libs/libsciaction_binding.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/history_manager/.libs/libscihistory_manager.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/jvm/.libs/libscijvm.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/fileio/.libs/libscifileio.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/string/.libs/libscistring.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/elementary_functions/.libs/libscielementary_functions.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/arnoldi/.libs/libsciarnoldi.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/api_scilab/.libs/libsciapi_scilab.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/libs/libst/.libs/libscilibst.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/libs/dynamiclibrary/.libs/libscidynamiclibrary.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/xcos/.libs/libscixcos.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/xpad/.libs/libscixpad.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/core/.libs/libscicore.so /usr/lib64/libxml2.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/libs/MALLOC/.libs/libscimalloc.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/output_stream/.libs/libscioutput_stream.so /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/hdf5/.libs/libscihdf5-forceload.so /usr/lib64/libhdf5.so /usr/lib64/libsz.so -llapack -lblas -ltk8.5 -ltcl8.5 -lpcreposix -lpcre -lpthread -ldl -lcurses -lz -lm -Wl,-rpath -Wl,/usr/lib64/scilab
/var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/arnoldi/.libs/libsciarnoldi.so: undefined reference to `zunm2r_'
./modules/core/.libs/libscicore.so: undefined reference to `zzledt_'
/var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/arnoldi/.libs/libsciarnoldi.so: undefined reference to `dsteqr_'
/var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/elementary_functions/.libs/libscielementary_functions.so: undefined reference to `shrslv_'
/var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1/modules/arnoldi/.libs/libsciarnoldi.so: undefined reference to `zlartg_'
...
collect2: ld returned 1 exit status
make[1]: *** [scilab-bin] Erreur 1
make[1]: quittant le répertoire « /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1 »
make: *** [all-recursive] Erreur 1

Reproducible: Always

Steps to Reproduce:
1.emerge scilab
2.
3.




$ emerge --info scilab
Portage 2.2_rc67 (default/linux/amd64/10.0/desktop, gcc-4.3.3, glibc-2.9_p20081201-r2, 2.6.33-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.33-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T5450_@_1.66GHz-with-gentoo-2.1.6
Timestamp of tree: Wed, 31 Mar 2010 05:30:23 +0000
app-shells/bash:     4.0_p35
dev-java/java-config: 2.1.10
dev-lang/python:     2.6.5-r1
dev-util/cmake:      2.8.1
sys-apps/baselayout: 2.1.6
sys-apps/openrc:     0.6.0
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65
sys-devel/automake:  1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.19.1-r1
sys-devel/gcc:       4.3.3-r2
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.29
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-march=core2 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="ftp://gentoo.imj.fr/pub/gentoo/ http://mirrors.linuxant.fr/distfiles.gentoo.org/ ftp://mirrors.linuxant.fr/distfiles.gentoo.org/ http://gentoo.modulix.net/gentoo/ ftp://mirror.ovh.net/gentoo-distfiles/ http://mirror.ovh.net/gentoo-distfiles/"
LANG="fr_FR.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--sort-common -Wl,--as-needed"
LINGUAS="fr"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/java-overlay /var/lib/layman/kde /var/lib/layman/sabayon /var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/devnull /usr/portage"
SYNC="rsync://rsync.fr.gentoo.org"
USE="X a52 aac acl acpi alac alsa amd64 apache2 apm bash-completion berkdb blender-game bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups cvs cxx dbus dell device-mapper dhcpcd disk-partition dri dts dvd dvdr dvdread emboss encode evo exif faac faad fam fbcondecor ffmpeg firefox firefox3 flac fortran fuse gdbm gif git gpm hal hddtemp hg iconv ipv6 java jpeg kde kde4 kerberos konqueror lame laptop lcms lm_sensors mad mercurial mikmod mmx mmxext mng modules mozilla mp3 mp4 mpeg mudflap multilib ncurses networkmanager nls nptl nptlonly ogg openal openexr opengl openmp pam pango pascal pcre pdf perl phonon player png policykit ppds pppd python qt-experimental qt3support qt4 quicktime readline reflection samba sdl semantic-desktop session smbclient spell spl sse sse2 sse3 ssl ssse3 startup-notification subversion suid svg svn sysfs taglib tcpd thunar tiff truetype unicode usb vdpau verse vim vim-pager vim-syntax vim-with-x vorbis wavpack winbind x264 xcb xine xml xmlrpc xorg xscreensaver xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="fr" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv nouveau" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Groggy 2010-04-01 13:11:22 UTC
Created attachment 226111 [details]
build log
Comment 2 Sébastien Fabbro (RETIRED) gentoo-dev 2012-05-25 22:06:53 UTC
was fixed with forcing no-as-needed. scilab support for as-needed is hard to get.