* CPV: sci-mathematics/scilab-5.2.1 * REPO: science * USE: amd64 elibc_glibc gui hdf5 kernel_linux matio multilib nls tk umfpack userland_GNU >>> Unpacking source... >>> Unpacking scilab-5.2.1-src.tar.gz to /var/tmp/portage/sci-mathematics/scilab-5.2.1/work >>> Source unpacked in /var/tmp/portage/sci-mathematics/scilab-5.2.1/work >>> Preparing source in /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1 ... * Applying scilab-5.2.1-no-redef-exp10.patch ...  [ ok ] * Checking for at least 512MBytes RAM ...  [ ok ] * Applying scilab-5.2.1-java-heap.patch ...  [ ok ] * Applying scilab-5.2.1-hdf-java-2.6.patch ...  [ ok ] * Applying scilab-5.2.1-scilib-fix.patch ...  [ ok ] * Applying scilab-5.2.1-nojavacheckversion.patch ...  [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1' ... * Running aclocal -I m4/ ...  [ ok ] * Running libtoolize --copy --force --install --automake ...  [ ok ] * Running aclocal -I m4/ ...  [ ok ] * Running autoconf ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy --foreign ...  [ ok ] * Running elibtoolize in: scilab-5.2.1/modules/dynamic_link/src/scripts * Applying portage-1.5.10.patch ... * Applying max_cmd_len-1.5.20.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-1.5.patch ... * Running elibtoolize in: scilab-5.2.1/config * Applying portage-2.2.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-2.2.6.patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-mathematics/scilab-5.2.1/work/scilab-5.2.1 ... * econf: updating scilab-5.2.1/modules/dynamic_link/src/scripts/config.sub with /usr/share/gnuconfig/config.sub * econf: updating scilab-5.2.1/modules/dynamic_link/src/scripts/config.guess with /usr/share/gnuconfig/config.guess * econf: updating scilab-5.2.1/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating scilab-5.2.1/config/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-rpath --without-pvm --disable-build-help --enable-nls --enable-build-localization --without-fftw --with-gui --with-javasci --with-hdf5 --with-matio --with-umfpack --with-tk --without-scicos checking whether ln -s works... yes checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for a BSD-compatible install... /usr/bin/install -c checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for ld used by GCC... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for shared library path variable... LD_LIBRARY_PATH checking whether to activate relocatable installation... no checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for shared library run path origin... done checking whether to enable maintainer-specific portions of Makefiles... no checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for x86_64-pc-linux-gnu-pkg-config... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for x86_64-pc-linux-gnu-g77... no checking for x86_64-pc-linux-gnu-xlf... no checking for x86_64-pc-linux-gnu-f77... no checking for x86_64-pc-linux-gnu-frt... no checking for x86_64-pc-linux-gnu-pgf77... no checking for x86_64-pc-linux-gnu-cf77... no checking for x86_64-pc-linux-gnu-fort77... no checking for x86_64-pc-linux-gnu-fl32... no checking for x86_64-pc-linux-gnu-af77... no checking for x86_64-pc-linux-gnu-xlf90... no checking for x86_64-pc-linux-gnu-f90... no checking for x86_64-pc-linux-gnu-pgf90... no checking for x86_64-pc-linux-gnu-pghpf... no checking for x86_64-pc-linux-gnu-epcf90... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking if x86_64-pc-linux-gnu-gfortran is a fortran 90 compatible compiler... yes checking size of int... 4 checking size of long... 8 checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes checking whether x86_64-pc-linux-gnu-gfortran understands -c and -o together... yes checking for nm... nm checking for leading underscores with Fortran (name-mangling scheme)... no checking for trailing underscores with Fortran (name-mangling scheme)... yes checking use of the sharpsign in CPP... yes Define C2F with Trailing Underscore and Sharp Sign checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fopen in -lhdf5... yes checking JAVA_HOME variable... JAVA_HOME variable found, use it as JVM root directory checking for zip or jar files to include on CLASSPATH... checking to see if the java compiler works... yes Using JAVAC=/opt/icedtea6-bin-1.7.1/bin/javac Java found in /opt/icedtea6-bin-1.7.1 checking type of jvm... jdk checking java API version... 1.5 Using the following JNI include flags -I/opt/icedtea6-bin-1.7.1/include -I/opt/icedtea6-bin-1.7.1/include/linux checking if jni.h can be included... yes Looking for JNI libs with x86_64 as machine hardware name Looking for /opt/icedtea6-bin-1.7.1/jre/lib/x86_64/libjava.so Looking for /opt/icedtea6-bin-1.7.1/jre/lib/amd64/libjava.so Found /opt/icedtea6-bin-1.7.1/jre/lib/amd64/libjava.so Using the following JNI library flags -L/opt/icedtea6-bin-1.7.1/jre/lib/amd64 -ljava -lverify -L/opt/icedtea6-bin-1.7.1/jre/lib/amd64/server -ljvm Using the following runtime library path /opt/icedtea6-bin-1.7.1/jre/lib/amd64:/opt/icedtea6-bin-1.7.1/jre/lib/amd64/server checking to see if we can link a JNI application... yes checking for zip or jar files to include on CLASSPATH... checking for java... /opt/icedtea6-bin-1.7.1/bin/java checking for java_g... no checking for javah... /opt/icedtea6-bin-1.7.1/bin/javah checking for jar... /opt/icedtea6-bin-1.7.1/bin/jar checking for jdb... /opt/icedtea6-bin-1.7.1/bin/jdb checking for ant... /usr/bin/ant checking jgraphx... /usr/share/jgraphx/lib/jgraphx.jar checking flexdock... /usr/share/flexdock/lib/flexdock.jar checking looks... /usr/share/jgoodies-looks-2.0/lib/looks.jar checking skinlf... /usr/share/skinlf/lib/skinlf.jar checking jogl... /usr/share/jogl/lib/jogl.jar checking for glTexParameterf in -ljogl... yes checking gluegen-rt... /usr/share/gluegen/lib/gluegen-rt.jar checking for Java_com_sun_gluegen_runtime_UnixDynamicLinkerImpl_dlclose__J in -lgluegen-rt... yes checking jhall... /usr/share/javahelp/lib/jhall.jar checking jrosetta-API... /usr/share/jrosetta/lib/jrosetta-API.jar checking jrosetta-engine... /usr/share/jrosetta/lib/jrosetta-engine.jar checking jeuclid-core... /usr/share/jeuclid-core/lib/jeuclid-core.jar checking fop... /usr/share/fop/lib/fop.jar checking batik-all... /usr/share/batik-1.7/lib/batik-all.jar checking commons-io... /usr/share/commons-io-1/lib/commons-io.jar checking xmlgraphics-commons... /usr/share/xmlgraphics-commons-1.3/lib/xmlgraphics-commons.jar checking avalon-framework... /usr/share/avalon-framework-4.2/lib/avalon-framework.jar checking xml-apis-ext... /usr/share/xml-commons-external-1.3/lib/xml-apis-ext.jar checking jhdf5... /usr/share/hdf-java/lib/jhdf5.jar checking commons-logging... /usr/share/commons-logging/lib/commons-logging.jar checking jlatexmath... /usr/share/jlatexmath/lib/jlatexmath.jar checking checkstyle... no configure: WARNING: Could not find or use the Java package/jar checkstyle used by Checkstyle - code checking (looking for package com.puppycrawl.tools.checkstyle.CheckStyleTask) checking commons-beanutils... no configure: WARNING: Could not find or use the Java package/jar commons-beanutils used by Bean utility (looking for package org.apache.commons.beanutils.Converter) checking antlr... /usr/share/antlr/lib/antlr.jar checking for sleep... yes checking for usleep... yes checking for dup2... yes checking for getcwd... yes checking for getpagesize... yes checking for getpass... yes checking for rmdir... yes checking for getwd... yes checking for regcomp... yes checking for atexit... yes checking for putenv... yes checking for setenv... yes checking for bzero... yes checking for memmove... yes checking for memset... yes checking for strcasecmp... yes checking for strerror... yes checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for select... yes checking for endpwent... yes checking for gethostbyaddr... yes checking for gethostbyname... yes checking for gethostname... yes checking for gettimeofday... yes checking for isascii... yes checking for iswprint... yes checking for mkdir... yes checking for munmap... yes checking for cos in -lm... yes checking for pow... no checking for sqrt... no checking for finite... yes checking for floor... no checking for exp10... no checking for isinf... yes checking for re_comp... yes checking for socket... yes checking for uname... yes checking for setlocale... yes checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking values.h usability... yes checking values.h presence... yes checking for values.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking nlist.h usability... no checking nlist.h presence... no checking for nlist.h... no checking sgtty.h usability... yes checking sgtty.h presence... yes checking for sgtty.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking term.h usability... yes checking term.h presence... yes checking for term.h... yes checking termcap.h usability... yes checking termcap.h presence... yes checking for termcap.h... yes checking termio.h usability... yes checking termio.h presence... yes checking for termio.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking whether time.h and sys/time.h may both be included... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for struct stat.st_blksize... yes checking for struct stat.st_rdev... yes checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/gmsgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc checking whether closedir returns void... no checking return type of signal handlers... void checking whether struct tm is in sys/time.h or time.h... time.h checking for struct stat.st_blocks... yes checking for main in -lcurses... yes checking for library containing tgetent... none required checking ncurses.h usability... yes checking ncurses.h presence... yes checking for ncurses.h... yes checking curses.h usability... yes checking curses.h presence... yes checking for curses.h... yes checking for dlopen in -ldl... yes checking for library containing pthread_join... -lpthread checking for xml2-config... xml2-config checking for xmlReaderForFile in -lxml2... yes checking for bind_textdomain_codeset... yes checking for msgcat... /usr/bin/msgcat checking if BLAS, ATLAS or MKL is available... checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lpthread -ldl -lcurses -lgfortranbegin -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lmkl... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes Generic Blas found checking if LAPACK is available... checking for cheev_ in -llapack -lblas ... yes LAPACK_LIBS env variable found checking suitesparse/umfpack.h usability... no checking suitesparse/umfpack.h presence... no checking for suitesparse/umfpack.h... no checking umfpack.h usability... yes checking umfpack.h presence... yes checking for umfpack.h... yes checking for amd_info in -lamd... yes checking for umf_divcomplex in -lumfpack... yes checking for pcre-config... pcre-config checking for pcre_compile in -lpcre... yes checking for regexec in -lpcreposix... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking for X... libraries , headers checking for gethostbyname... (cached) yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for main in -ldl... yes checking for header file tcl.h... found in /usr/include checking if tcl is version 8.4 or later... (8.5) yes checking for tcl library tcl8.5... found /usr/lib/libtcl8.5.so using -L/usr/lib -ltcl8.5 checking for Tcl_DoOneEvent in -ltcl8.5... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for header file tk.h... found in /usr/include checking if tk is version 8.4 or later... (8.5) yes checking for tk library tk8.5... found /usr/lib/libtk8.5.so using -L/usr/lib -ltk8.5 checking for Tk_BindEvent in -ltk8.5... yes checking for MATIO... yes checking matio.h usability... yes checking matio.h presence... yes checking for matio.h... yes checking matioConfig.h usability... yes checking matioConfig.h presence... yes checking for matioConfig.h... yes checking for Mat_Open in -lmatio... yes checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... nm checking the name lister (nm) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking command to parse nm output from x86_64-pc-linux-gnu-gcc object... ok checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3 checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes checking for objdir... .libs checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for an ANSI C-conforming const... yes checking for inline... inline checking for splint... no configure: creating ./config.status config.status: creating libs/MALLOC/Makefile config.status: creating libs/dynamiclibrary/Makefile config.status: creating libs/doublylinkedlist/Makefile config.status: creating libs/hashtable/Makefile config.status: creating libs/libst/Makefile config.status: creating contrib/Makefile config.status: creating modules/helptools/Makefile config.status: creating modules/helptools/macros/xmlfiletohtml.sci config.status: creating modules/data_structures/Makefile config.status: creating modules/differential_equations/Makefile config.status: creating modules/optimization/Makefile config.status: creating modules/elementary_functions/Makefile