Upgraded portage to 2.0_rc11 and now emerge is broken: emerge portage -pv These are the packages that would be merged, in order: Calculating dependencies -Traceback (most recent call last): File "/usr/bin/emerge", line 18, in <module> retval = _emerge.emerge_main() File "/usr/lib64/portage/pym/_emerge/__init__.py", line 13879, in emerge_main myopts, myaction, myfiles, spinner) File "/usr/lib64/portage/pym/_emerge/__init__.py", line 12789, in action_build retval, favorites = mydepgraph.select_files(myfiles) File "/usr/lib64/portage/pym/_emerge/__init__.py", line 5126, in select_files self.altlist() File "/usr/lib64/portage/pym/_emerge/__init__.py", line 6044, in altlist self._resolve_conflicts() File "/usr/lib64/portage/pym/_emerge/__init__.py", line 6077, in _resolve_conflicts if not self.validate_blockers(): File "/usr/lib64/portage/pym/_emerge/__init__.py", line 5883, in validate_blockers blocker = Blocker(atom=portage.dep.Atom(myatom), File "/usr/lib64/portage/pym/portage/dep.py", line 470, in __call__ instance = super(_AtomCache, cls).__call__(s) File "/usr/lib64/portage/pym/portage/dep.py", line 506, in __init__ raise InvalidAtom(s) portage.exception.InvalidAtom: !build Happens with any package. Reproducible: Always gcc-config -l: [1] x86_64-pc-linux-gnu-3.4.2 [2] x86_64-pc-linux-gnu-3.4.2-hardened [3] x86_64-pc-linux-gnu-3.4.2-hardenednossp [4] x86_64-pc-linux-gnu-3.4.5 [5] x86_64-pc-linux-gnu-3.4.5-hardened [6] x86_64-pc-linux-gnu-3.4.5-hardenednopie [7] x86_64-pc-linux-gnu-3.4.5-hardenednopiessp [8] x86_64-pc-linux-gnu-3.4.5-hardenednossp [9] x86_64-pc-linux-gnu-4.1.1 * emerge --info: Portage 2.2_rc11 (default/linux/amd64/2008.0, gcc-4.1.1, glibc-2.7-r1, 2.6.23-gentoo-r6 x86_64) ================================================================= System uname: Linux-2.6.23-gentoo-r6-x86_64-AMD_Athlon-tm-_Dual_Core_Processor_4850e-with-glibc2.2.5 Timestamp of tree: Sat, 27 Sep 2008 02:08:01 +0000 app-shells/bash: 3.2_p39 dev-java/java-config: 1.3.0-r2, 2.0.26-r4 dev-lang/python: 2.4.4-r4, 2.5.2-r7 dev-python/pycrypto: 2.0.1-r6 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.2.5 sys-apps/sandbox: 1.2.18.1-r3 sys-devel/autoconf: 2.13, 2.62-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=k8 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/gentoo-release /etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo /etc/udev/rules.d" CXXFLAGS="-march=k8 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="cvs distlocks parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch userpriv" GENTOO_MIRRORS="http://mirror.gentoo.se" LDFLAGS="-Wl,-O1" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X aac acl acpi alsa amd64 avahi bash-completion berkdb bitmap-fonts bzip2 cdr cli cracklib cups dbus dri dts dvd dvdr emacs evo exif ffmpeg firefox flac foomaticdb fortran gdbm gif glitz gnome hal iconv ipv6 isdnlog jack joystick jpeg lesstif lirc mad matroska midi mmx mono moznomail mozsvg mp3 mudflap multilib musepack ncurses nls nntp nptl nptlonly ogg oggvorbis openmp oss pam pcre pdf perl ppds pppd python readline reflection sdl session spl sse sse2 ssl svg sysfs tcpd theora tiff truetype truetype-fonts type1-fonts unicode vorbis xine xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIRC_DEVICES="hauppauge" USERLAND="GNU" VIDEO_CARDS="nv nvidia" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY My /etc/portage is empty.
Created attachment 166943 [details, diff] handle the InvalidAtom exception If this patch is saved as /tmp/invalid_atom.patch, then it can be applied as follows: patch /usr/lib/portage/pym/_emerge/__init__.py /tmp/invalid_atom.patch
Thanks. It now doesn't crash, but a emerge -upD world gives: !!! Invalid or corrupt dependency specification: Invalid Atom: !build ('installed', '/', 'sys-devel/gcc-3.4.2-r2', 'nomerge') virtual/libc >=sys-devel/gcc-config-1.3.1 >=sys-libs/zlib-1.1.4 !sys-devel/hardened-gcc !uclibc? ( >=sys-libs/glibc-2.3.3_pre20040420-r1 hardened? ( >=sys-libs/glibc-2.3.3_pre20040529 ) ) amd64? ( multilib? ( >=app-emulation/emul-linux-x86-glibc-1.1 ) ) !build? ( gcj? ( gtk? ( >=x11-libs/gtk+-2.2 ) >=media-libs/libart_lgpl-2.1 ) >=sys-libs/ncurses-5.2-r2 nls? ( sys-devel/gettext ) ) >=sys-apps/texinfo-4.2-r4 >=sys-devel/bison-1.875 >=sys-devel/binutils-2.14.90.0.8-r1 amd64? ( >=sys-devel/binutils-2.15.90.0.1.1-r1 ) !bootstrap? ( sys-devel/patch ) !bootstrap? ( sys-devel/patch ) !bootstrap? ( sys-devel/patch ) sys-devel/gnuconfig !bootstrap? ( sys-devel/patch ) virtual/libc >=sys-devel/gcc-config-1.3.1 >=sys-libs/zlib-1.1.4 !sys-devel/hardened-gcc !uclibc? ( >=sys-libs/glibc-2.3.3_pre20040420-r1 hardened? ( >=sys-libs/glibc-2.3.3_pre20040529 ) ) amd64? ( multilib? ( >=app-emulation/emul-linux-x86-glibc-1.1 ) ) !build? ( gcj? ( gtk? ( >=x11-libs/gtk+-2.2 ) >=media-libs/libart_lgpl-2.1 ) >=sys-libs/ncurses-5.2-r2 nls? ( sys-devel/gettext ) ) sys-devel/gcc-config !nocxx? ( !n32? ( !n64? ( !uclibc? ( !build ( sys-libs/libstdc++-v3 ) ) ) ) ) Portage is unable to process the dependencies of the 'sys-devel/gcc-3.4.2-r2' package. In order to correct this problem, the package should be uninstalled, reinstalled, or upgraded. As a temporary workaround, the --nodeps option can be used to ignore all dependencies. For reference, the problematic dependencies can be found in the *DEPEND files located in '/var/db/pkg/sys-devel/gcc-3.4.2-r2/'. Thought you might find that interesting.
Somewhere in /var/db/pkg/sys-devel/gcc-3.4.2-r2/*DEPEND you've got "!build" which is supposed to be "!build?". These commands should correct it: sed 's:!build :!build? :g' -i /var/db/pkg/sys-devel/gcc-3.4.2-r2/*DEPEND touch /var/db/pkg/sys-devel/gcc-3.4.2-r2 rm /var/cache/edb/vdb_blockers.pickle
This is fixed in 2.2_rc12.
