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Bug 185916 - [science overlay] sci-mathematics/maxima-5.12.0 emerge can't find file gcl_collectfn.data
Summary: [science overlay] sci-mathematics/maxima-5.12.0 emerge can't find file gcl_co...
Status: RESOLVED DUPLICATE of bug 192449
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: High normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2007-07-19 21:11 UTC by Mark
Modified: 2007-09-13 19:12 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
proposed maxima's ebuild's diff (maxima-5.13.diff,336 bytes, patch)
2007-08-31 14:34 UTC, Panagiotis Christopoulos (RETIRED)
Details | Diff
maxima-5.13.0 build.log (build.log,347.34 KB, text/plain)
2007-08-31 14:36 UTC, Panagiotis Christopoulos (RETIRED)
Details
my emerge --info output (emerge_info.log,2.63 KB, text/plain)
2007-08-31 14:37 UTC, Panagiotis Christopoulos (RETIRED)
Details

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Description Mark 2007-07-19 21:11:07 UTC
maxima emerge generates the error:
Error in PROGN [or a callee]: Can't open file "/usr/lib/gcl-2.6.7/xgcl-2/../cmpnew/gcl_collectfn.data"

Reproducible: Always

Steps to Reproduce:
1. layman -a science
2. layman --sync ALL
3. emerge --sync
4. emerge -av maxima
Actual Results:  
These are the packages that would be merged, in order:

Calculating dependencies  ..... ..... ...... done!
[ebuild  N    ] sci-mathematics/maxima-5.12.0  USE="nls tetex unicode -clisp (-cmucl) -emacs -gcl -sbcl -tk" LINGUAS="-es -pt -pt_BR" 0 kB [2] 

Total: 1 package (1 new), Size of downloads: 0 kB
Portage overlays:
 [1] /usr/portage/local/layman/enlightenment
 [2] /usr/portage/local/layman/science

>>> Verifying ebuild Manifests...

>>> Emerging (1 of 1) sci-mathematics/maxima-5.12.0 to /
 * maxima-5.12.0.tar.gz MD5 ;-) ...                                       [ ok ]
 * maxima-5.12.0.tar.gz RMD160 ;-) ...                                    [ ok ]
 * maxima-5.12.0.tar.gz SHA1 ;-) ...                                      [ ok ]
 * maxima-5.12.0.tar.gz SHA256 ;-) ...                                    [ ok ]
 * maxima-5.12.0.tar.gz size ;-) ...                                      [ ok ]
 * checking ebuild checksums ;-) ...                                      [ ok ]
 * checking auxfile checksums ;-) ...                                     [ ok ]
 * checking miscfile checksums ;-) ...                                    [ ok ]
 * checking maxima-5.12.0.tar.gz ;-) ...                                  [ ok ]
>>> Unpacking source...
>>> Unpacking maxima-5.12.0.tar.gz to /var/tmp/portage/sci-mathematics/maxima-5.12.0/work
 * Applying maxima-5.12.0-xdg-utils.patch ...
  [ ok ]
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-mathematics/maxima-5.12.0/work/maxima-5.12.0 ...
 * Running eautoreconf in '/var/tmp/portage/sci-mathematics/maxima-5.12.0/work/maxima-5.12.0' ...
 * Running aclocal ...
  [ ok ]
 * Running autoconf ...
  [ ok ]
 * Running automake --add-missing --copy ...
  [ ok ]
 * econf: updating maxima-5.12.0/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating maxima-5.12.0/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-cmucl --disable-clisp --disable-sbcl --enable-gcl --with-wish=none --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for gcl... true
checking for iconv... true
checking for recode... false
checking POSIX shell to see that it contains getopts... trying /bin/sh
POSIX shell is /bin/sh
configure: creating ./config.status
config.status: creating Makefile
config.status: creating maxima-local
config.status: creating xmaxima-local
config.status: creating maxima.spec
config.status: creating maxima.iss
config.status: creating src/Makefile
config.status: creating src/maxima
config.status: creating src/maxima.bat
config.status: creating src/rmaxima
config.status: creating src/autoconf-variables.lisp
config.status: creating lisp-utils/Makefile
config.status: creating tests/Makefile
config.status: creating doc/Makefile
config.status: creating doc/emaxima/Makefile
config.status: creating doc/info/Makefile
config.status: creating doc/info/es/Makefile
config.status: creating doc/info/es.utf8/Makefile
config.status: creating doc/info/pt/Makefile
config.status: creating doc/info/pt.utf8/Makefile
config.status: creating doc/info/pt_BR/Makefile
config.status: creating doc/info/pt_BR.utf8/Makefile
config.status: creating doc/intromax/Makefile
config.status: creating doc/man/Makefile
config.status: creating doc/man/maxima.1
config.status: creating doc/share/Makefile
config.status: creating interfaces/Makefile
config.status: creating interfaces/emacs/Makefile
config.status: creating interfaces/emacs/emaxima/Makefile
config.status: creating interfaces/emacs/misc/Makefile
config.status: creating interfaces/xmaxima/Makefile
config.status: creating interfaces/xmaxima/autoconf-variables.tcl
config.status: creating interfaces/xmaxima/Tkmaxima/Header.tcl
config.status: creating interfaces/xmaxima/doc/Makefile
config.status: creating interfaces/xmaxima/doc/figures/Makefile
config.status: creating interfaces/xmaxima/msgs/Makefile
config.status: creating interfaces/xmaxima/win32/Makefile
config.status: creating plotting/mgnuplot
config.status: creating share/Makefile
config.status: creating demo/Makefile
config.status: creating plotting/Makefile

Summary:
GCL enabled. Executable name: "gcl"
default lisp: gcl
wish executable name: "none"
Making all in src
make[1]: Entering directory `/var/tmp/portage/sci-mathematics/maxima-5.12.0/work/maxima-5.12.0/src'
test -d binary-gcl || mkdir binary-gcl
test -d binary-gcl/numerical || mkdir binary-gcl/numerical
test -d binary-gcl/numerical/slatec || mkdir binary-gcl/numerical/slatec
gcl -batch -eval '(progn (load "../lisp-utils/defsystem.lisp") (compiler::emit-fn t) (funcall (intern (symbol-name :operate-on-system) :mk) "maxima" :compile :verbose t) (compiler::make-all-proclaims "*/*.fn" "*/*/*/*.fn"))' && \
	gcl -batch -eval '(progn (load "../lisp-utils/defsystem.lisp") (funcall (intern (symbol-name :operate-on-system) :mk) "maxima" :load :verbose t) (when (fboundp (quote si::sgc-on))(si::sgc-on t)) (si:save-system "binary-gcl/maxima"))'

Warning:
REQUIRE is being redefined.
Error in PROGN [or a callee]: Can't open file "/usr/lib/gcl-2.6.7/xgcl-2/../cmpnew/gcl_collectfn.data"

Fast links are on: do (use-fast-links nil) for debugging
Broken at PROGN.  Type :H for Help.
 1 (Continue) Retry loading file "/usr/lib/gcl-2.6.7/xgcl-2/../cmpnew/gcl_collectfn.o".
 2 (Abort) Return to top level.
dbl:>>


this happens wether or not I have the gentooscience.org layout enabeled
Comment 1 Mark 2007-07-19 21:12:52 UTC
magesing@mechpc68 ~ $ emerge --info
Portage 2.1.3_rc8 (default-linux/amd64/2007.0, gcc-4.1.1, glibc-2.5-r0, 2.6.22-g                                                                entoo-r1 x86_64)
=================================================================
System uname: 2.6.22-gentoo-r1 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 4                                                                800+
Gentoo Base System release 1.12.10
Timestamp of tree: Thu, 19 Jul 2007 18:50:01 +0000
dev-java/java-config: 1.3.7, 2.0.33-r1
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.16
sys-devel/libtool:   1.5.24
virtual/os-headers:  2.6.22-r1
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=athlon64 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shu                                                                tdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/revdep-rebuild                                                                 /etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-march=athlon64 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks metadata-transfer sandbox sfperms strict unmerge-orphans"
GENTOO_MIRRORS="http://gentoo.mirrors.tera-byte.com/ http://distfiles.gentoo.org                                                                 http://www.ibiblio.org/pub/Linux/distributions/gentoo"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress                                                                 --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/di                                                                stfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/enlightenment /usr/portage/local/laym                                                                an/science"
SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage"
USE="X acl alsa amd64 bash-completion beagle berkdb bitmap-fonts bzip2 cdr cli c                                                                racklib crypt cups doc dri dvd dvdr dvdread fortran gd gdbm gif gnome gpm gtk ic                                                                onv imagemagick ipv6 isdnlog java jpeg libg++ midi mmx mono mp3 mudflap ncurses                                                                 nls nptl nptlonly nsplugin ogg opengl openmp pam pcre pdf perl png pppd python q                                                                t3 quicktime readline reflection samba session smp spell spl sse sse2 ssl tcpd t                                                                est tetex tiff truetype truetype-fonts type1-fonts unicode usb vim-syntax vorbis                                                                 xinerama xorg xvid zlib" ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym                                                                 copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat li                                                                near meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INP                                                                UT_DEVICES="evdev keyboard mouse wacom" KERNEL="linux" LCD_DEVICES="bayrad cfont                                                                z cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_                                                                CARDS="nvidia nv vesa"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGU                                                                AS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 2 Jakub Moc (RETIRED) gentoo-dev 2007-07-19 21:18:54 UTC
Nothing critical here at all.
Comment 3 Juergen Rose 2007-08-30 07:26:09 UTC
I get almost the same error with maxima-5.13.0. I had no problem with maxima-5.13.0. The message is:

make[1]: Entering directory `/var/tmp/portage/sci-mathematics/maxima-5.13.0/work/maxima-5.13.0/src'
test -d binary-gcl || mkdir binary-gcl
test -d binary-gcl/numerical || mkdir binary-gcl/numerical
test -d binary-gcl/numerical/slatec || mkdir binary-gcl/numerical/slatec
gcl -batch -eval '(progn (load "../lisp-utils/defsystem.lisp") (compiler::emit-fn t) (funcall (intern (symbol-name :operate-on-system) :mk) "maxima" :compile :verbose t) (compiler::make-all-proclaims "*/*.fn" "*/*/*/*.fn"))' && \
        gcl -batch -eval '(progn (load "../lisp-utils/defsystem.lisp") (funcall (intern (symbol-name :operate-on-system) :mk) "maxima" :load :verbose t) (when (fboundp (quote si::sgc-on))(si::sgc-on t)) (si:save-system "binary-gcl/maxima"))'

Warning:
REQUIRE is being redefined.
Error in PROGN [or a callee]: Can't open file "/usr/lib/gcl-2.6.7/xgcl-2/../cmpnew/gcl_collectfn.data"

Fast links are on: do (use-fast-links nil) for debugging
Broken at PROGN.  Type :H for Help.
 1 (Continue) Retry loading file "/usr/lib/gcl-2.6.7/xgcl-2/../cmpnew/gcl_collectfn.o".
 2 (Abort) Return to top level.

This happened also after a fresh emerge of gcl-2.6.7-r2.

Comment 4 Juergen Rose 2007-08-30 10:44:29 UTC
And it also happened of one x86_64 system with the old gcl-2.6.7-r2 without and with the patch to gcl-2.6.7-34, compare bug 190631 (http://bugs.gentoo.org/show_bug.cgi?id=190631).

On a second x86_64 system I had no problem to emerge maxima-5.13.0.
Comment 5 Panagiotis Christopoulos (RETIRED) gentoo-dev 2007-08-31 14:34:25 UTC
Created attachment 129688 [details, diff]
proposed maxima's ebuild's diff

This issue can be fixed by adding "--enable-gcl-alt-link" in maxima's ebuilds when gcl is enabled. After that fix, emake starts to compile many lisp sources, produces objects etc. and fails again, with error:

<...>
binary-gcl/nregex.o:/var/tmp/portage/sci-mathematics/maxima-5.13.0/work/maxima-5.13.0/src/binary-gcl/nregex.c:5200: first defined here
binary-gcl/openmath.o: In function `init_code':
/var/tmp/portage/sci-mathematics/maxima-5.13.0/work/maxima-5.13.0/src/binary-gcl/openmath.c:5200: multiple definition of `init_code'
binary-gcl/nregex.o:/var/tmp/portage/sci-mathematics/maxima-5.13.0/work/maxima-5.13.0/src/binary-gcl/nregex.c:5200: first defined here
collect2: ld returned 1 exit status
sh: ./binary-gcl/raw_maxima: No such file or directory
Error in LET* [or a callee]: Cannot delete the file #p"./binary-gcl/raw_maxima": "No such file or directory".

Fast links are on: do (use-fast-links nil) for debugging
Broken at DELETE-FILE.  Type :H for Help.
 1 (Abort) Return to top level.
dbl:>>

This error is reproducable on every maxima's version I tried from 5.11 and on(5.11,5.12,5.13,cvs). The gcl version I used, is the upcoming gcl-2.6.7-r3(which is based on debian's gcl_2.6.7-34 diff.) It's strange, because "binary-gcl/raw_maxima" file gets removed the time when the error happens. I didn't manage to find more, yet, but I don't think that it's a gcl's bug. On the other side, every version of maxima, compiles flawlesly with sbcl.

The build.log and my emerge --info output, will follow.

I hope I helped, 
Panagiotis
Comment 6 Panagiotis Christopoulos (RETIRED) gentoo-dev 2007-08-31 14:36:38 UTC
Created attachment 129690 [details]
maxima-5.13.0 build.log
Comment 7 Panagiotis Christopoulos (RETIRED) gentoo-dev 2007-08-31 14:37:22 UTC
Created attachment 129691 [details]
my emerge --info output
Comment 8 Jakub Moc (RETIRED) gentoo-dev 2007-09-13 19:12:51 UTC

*** This bug has been marked as a duplicate of bug 192449 ***