114097 – An ebuild for the science program: RepeatMasker

Bug 114097 - An ebuild for the science program: RepeatMasker

Summary: An ebuild for the science program: RepeatMasker

Status:	RESOLVED DUPLICATE of bug 114096

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	New packages (show other bugs)
Hardware:	All Linux

Importance:	High enhancement (vote)
Assignee:	Gentoo Linux bug wranglers

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2005-11-30 19:11 UTC by Brady Catherman
Modified:	2005-12-01 00:10 UTC (History)
CC List:	0 users

See Also:
Package list:
Runtime testing required:	---

Attachments
Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.

Description Brady Catherman 2005-11-30 19:11:33 UTC

I have no clue what this program does. I was asked to install it on our cluster
so I went ahead and made an ebuild for it.

This package has a fetch restriction.

(From the packages webpage)
RepeatMasker is a program that screens DNA sequences for interspersed repeats
and low complexity DNA sequences. The output of the program is a detailed
annotation of the repeats that are present in the query sequence as well as a
modified version of the query sequence in which all the annotated repeats have
been masked (default: replaced by Ns). It requiers an executable called
cross_match to run. Cross_match can be found in another application called
Phrap. Both Repeatmasker and Phrap have limited availablty.

(Phrap was submitted a bit ago)

Comment 1 Jakub Moc (RETIRED) gentoo-dev

2005-12-01 00:10:15 UTC


*** This bug has been marked as a duplicate of 114096 ***