I noticed that Portage doesn't seem to be applying package moves for my arm64 cross root. This manifests as file collisions when packages get reinstalled to satisfy dependencies. Portage 3.0.66.1-22+gc990345eb (python 3.13.1-final-0, default/linux/arm64/23.0/systemd, gcc-14, glibc-2.40-r5, 6.6.60-dist x86_64) ================================================================= System uname: Linux-6.6.60-dist-x86_64-AMD_Phenom-tm-_II_X6_1055T_Processor-with-glibc2.40 KiB Mem: 32856332 total, 20275944 free KiB Swap: 33554428 total, 33147520 free Head commit of repository gentoo: 718747ac737d148419fa6bce1f09563a3e84bbb1 sh bash 5.2_p37 ld GNU ld (Gentoo 2.43 p3) 2.43.1 distcc 3.4 x86_64-pc-linux-gnu [disabled] ccache version 4.10.2 [disabled] app-misc/pax-utils: 1.3.8::gentoo app-shells/bash: 5.2_p37::gentoo dev-build/make: 4.4.1-r100::gentoo dev-lang/python: 3.12.7_p1::gentoo sys-apps/baselayout: 2.17::gentoo sys-apps/sandbox: 2.39::gentoo sys-apps/systemd: 256.7::gentoo sys-devel/binutils: 2.42-r2::gentoo, 2.43-r2::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/gcc: 14.2.1_p20241116::gentoo sys-devel/gcc-config: 2.11::gentoo sys-kernel/linux-headers: 6.6-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.40-r5::gentoo Repositories: gentoo location: /home/floppym/repos/gentoo sync-type: git sync-uri: ssh://git@git.gentoo.org/repo/gentoo.git priority: -1000 volatile: True ACCEPT_KEYWORDS="arm64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="aarch64-unknown-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/data/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LEX="flex" PKGDIR="/data/cache/binpkgs-arm64" PORTAGE_CONFIGROOT="/usr/aarch64-unknown-linux-gnu/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/x/arm64" SHELL="/bin/zsh" USE="acl arm64 bzip2 crypt gdbm iconv ipv6 libtirpc ncurses nls pam pcre readline seccomp ssl systemd test-rust udev unicode xattr zlib" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_ARM="edsp v8 vfp vfp-d32 vfpv3 vfpv4" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres16" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12" RUBY_TARGETS="ruby32" VIDEO_CARDS="fbdev dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
I think you can use ROOT=/some/root emaint --fix moveinst to apply moves manually, though it would certainly be be nice to automate it (and also update config files including $ROOT/var/lib/portage/world).
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/proj/portage.git/commit/?id=b6a2901f66b6c242bff58e91d600d9529c0732a3 commit b6a2901f66b6c242bff58e91d600d9529c0732a3 Author: Zac Medico <zmedico@gentoo.org> AuthorDate: 2024-12-15 19:49:00 +0000 Commit: Zac Medico <zmedico@gentoo.org> CommitDate: 2024-12-16 02:26:22 +0000 Support cross-root package moves Bug: https://bugs.gentoo.org/946326 Signed-off-by: Zac Medico <zmedico@gentoo.org> NEWS | 2 ++ bin/fixpackages | 4 ++- lib/_emerge/actions.py | 47 +++++++++++++++---------- lib/portage/_global_updates.py | 15 ++++---- lib/portage/emaint/modules/sync/sync.py | 24 +++++++++---- lib/portage/tests/update/test_move_ent.py | 6 ++-- lib/portage/tests/update/test_move_slot_ent.py | 4 +-- lib/portage/tests/update/test_update_dbentry.py | 4 +-- 8 files changed, 67 insertions(+), 39 deletions(-)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=03f41049a0fe0632eabd8cddaaca898e45943201 commit 03f41049a0fe0632eabd8cddaaca898e45943201 Author: Sam James <sam@gentoo.org> AuthorDate: 2025-01-22 00:29:50 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2025-01-22 00:30:02 +0000 sys-apps/portage: add 3.0.67 Closes: https://bugs.gentoo.org/703520 Closes: https://bugs.gentoo.org/707980 Closes: https://bugs.gentoo.org/904702 Closes: https://bugs.gentoo.org/906044 Closes: https://bugs.gentoo.org/923530 Closes: https://bugs.gentoo.org/938164 Closes: https://bugs.gentoo.org/939299 Closes: https://bugs.gentoo.org/940120 Closes: https://bugs.gentoo.org/942512 Closes: https://bugs.gentoo.org/942760 Closes: https://bugs.gentoo.org/945382 Closes: https://bugs.gentoo.org/945861 Closes: https://bugs.gentoo.org/946326 Closes: https://bugs.gentoo.org/947822 Closes: https://bugs.gentoo.org/948067 Closes: https://bugs.gentoo.org/939444 Signed-off-by: Sam James <sam@gentoo.org> sys-apps/portage/Manifest | 1 + sys-apps/portage/portage-3.0.67.ebuild | 231 +++++++++++++++++++++++++++++++++ 2 files changed, 232 insertions(+)