104 | energyhistory_t() : nsteps(0), nsum(0), nsteps_sim(0), nsum_sim(0), ener_sum_sim(0) {} | ^~~~~~~~~~ /var/tmp/portage/sci-chemistry/gromacs-2024.2/work/gromacs-2024.2/src/gromacs/mdtypes/energyhistory.h:104:60: error: class energyhistory_t does not have any field named nsum_sim 104 | energyhistory_t() : nsteps(0), nsum(0), nsteps_sim(0), nsum_sim(0), ener_sum_sim(0) {} | ^~~~~~~~ /var/tmp/portage/sci-chemistry/gromacs-2024.2/work/gromacs-2024.2/src/gromacs/mdtypes/energyhistory.cpp: In member function void energyhistory_t::doCheckpoint(gmx::CheckpointData<operation>): /var/tmp/portage/sci-chemistry/gromacs-2024.2/work/gromacs-2024.2/src/gromacs/mdtypes/energyhistory.cpp:117:27: error: nsum was not declared in this scope 117 | bool useCheckpoint = (nsum <= 0 && nsum_sim <= 0); | ^~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_no_multilib_hardened_systemd-20240809-132509 UNMASKED: Please re-assign to toolchain@ if you get a test failure in C, C++, or Fortran code which makes no sense. <sys-devel/gcc-15.0.9999:15 Requested by sam ~dev-libs/icu-75.1 ~dev-libs/icu-layoutex-75.1 Block bug #35155 if this looks like a parallel build issue. The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle" gcc-config -l: [1] x86_64-pc-linux-gnu-15 * clang/llvm (if any): Python 3.12.5 Available Ruby profiles: [1] ruby31 (with Rubygems) [2] ruby32 (with Rubygems) [3] ruby33 (with Rubygems) * Available Rust versions: [1] rust-bin-1.79.0 * The following VMs are available for generation-2: *) Eclipse Temurin JDK 21.0.4_p7 [openjdk-bin-21] Available Java Virtual Machines: [1] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): [1] php8.3 * go version go1.22.6 linux/amd64 HEAD of ::gentoo commit 164e201b4207c13a68cd048e872368342b710ee4 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sat Aug 10 08:04:33 2024 +0000 2024-08-10 08:04:33 UTC emerge -qpvO =sci-chemistry/gromacs-2024.2 [ebuild N ] sci-chemistry/gromacs-2024.2 USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive opencl openmp single-precision threads tng -blas -build-manual -clang -clang-cuda -cuda -double-precision -lapack -mkl -mpi (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_12 -python3_10 -python3_11"
Created attachment 899750 [details] emerge-info.txt
Created attachment 899751 [details] emerge-history.txt
Created attachment 899752 [details] environment
Created attachment 899753 [details] etc.portage.tar.xz
Created attachment 899754 [details] qlist-info.txt
Created attachment 899755 [details] sci-chemistry:gromacs-2024.2:20240810-084619.log.xz
Created attachment 899756 [details] temp.tar.xz
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=534ae4eb830063aa768bca0cb6832159cec1d2d9 commit 534ae4eb830063aa768bca0cb6832159cec1d2d9 Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2024-11-21 08:13:09 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2024-11-21 08:13:37 +0000 sci-chemistry/gromacs: Fix build with gcc-15 Closes: https://bugs.gentoo.org/937696 Closes: https://bugs.gentoo.org/939006 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> sci-chemistry/gromacs/files/gromacs-gcc-15.patch | 36 ++++++++++++++++++++++++ sci-chemistry/gromacs/gromacs-2024.3.ebuild | 2 ++ sci-chemistry/gromacs/gromacs-2024.4.ebuild | 2 ++ sci-chemistry/gromacs/gromacs-2025.0_beta.ebuild | 2 ++ 4 files changed, 42 insertions(+)
