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Bug 831489 - sci-biology/raxml-7.2.6 fails to compile: evaluatePartialGenericSpecial.c:136:12: error: always_inline function _mm_hadd_pd requires target feature sse3, but would be inlined into function computeVectorGTRCATPROT that is compiled without support for sse3
Summary: sci-biology/raxml-7.2.6 fails to compile: evaluatePartialGenericSpecial.c:136...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-01-19 15:42 UTC by Agostino Sarubbo
Modified: 2024-05-24 08:45 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log (build.log,56.04 KB, text/plain)
2022-01-19 15:42 UTC, Agostino Sarubbo 		Details
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Description Agostino Sarubbo gentoo-dev 2022-01-19 15:42:16 UTC 
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/raxml-7.2.6 fails to compile.
Discovered on: amd64 (internal ref: tinderbox)

NOTE:
This machine uses CLANG as a compiler and LLD as a linker
Comment 1 Agostino Sarubbo gentoo-dev 2022-01-19 15:42:19 UTC 
Created attachment 762644 [details]
build.log

build log and emerge --info
Comment 2 Larry the Git Cow gentoo-dev 2024-05-24 08:45:19 UTC 
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ccce71a38571bf752f650f36417cb50fb69edaa8

commit ccce71a38571bf752f650f36417cb50fb69edaa8
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-05-24 08:44:40 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-05-24 08:44:40 +0000

    sci-biology/raxml: drop 7.2.6
    
    Closes: https://bugs.gentoo.org/822408
    Closes: https://bugs.gentoo.org/831489
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/raxml/Manifest                         |  1 -
 sci-biology/raxml/files/raxml-7.2.6-makefile.patch | 29 -----------------
 sci-biology/raxml/raxml-7.2.6.ebuild               | 37 ----------------------
 3 files changed, 67 deletions(-)

Additionally, it has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=48c3969c6bbd4c14e06285180baf5ca376114835

commit 48c3969c6bbd4c14e06285180baf5ca376114835
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-05-24 08:44:39 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-05-24 08:44:39 +0000

    sci-biology/raxml: add 8.2.13
    
    Bug: https://bugs.gentoo.org/822408
    Bug: https://bugs.gentoo.org/831489
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/raxml/Manifest                         |  1 +
 .../raxml/files/raxml-8.2.13-makefile.patch        | 37 +++++++++++++++++++++
 sci-biology/raxml/metadata.xml                     | 11 ++++---
 sci-biology/raxml/raxml-8.2.13.ebuild              | 38 ++++++++++++++++++++++
 4 files changed, 83 insertions(+), 4 deletions(-)