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Bug 822408 - sci-biology/raxml-7.2.6 fails to compile: pmmintrin.h:86:1: error: inlining failed in call to ‘always_inline’ ‘_mm_hadd_pd’: target specific option mismatch
Summary: sci-biology/raxml-7.2.6 fails to compile: pmmintrin.h:86:1: error: inlining f...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-11-08 08:02 UTC by Agostino Sarubbo
Modified: 2024-05-24 08:45 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,47.43 KB, text/plain)
2021-11-08 08:02 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2021-11-08 08:02:22 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/raxml-7.2.6 fails to compile.
Discovered on: amd64 (internal ref: tinderbox)

NOTE:
If you think this is a GCC-11 related issue, please block bug 732706.
Comment 1 Agostino Sarubbo gentoo-dev 2021-11-08 08:02:24 UTC
Created attachment 749499 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2021-11-08 08:02:25 UTC
Possible context of error(s):

/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include/pmmintrin.h:86:1: error: inlining failed in call to ‘always_inline’ ‘_mm_hadd_pd’: target specific option mismatch
Comment 3 Larry the Git Cow gentoo-dev 2024-05-24 08:45:18 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ccce71a38571bf752f650f36417cb50fb69edaa8

commit ccce71a38571bf752f650f36417cb50fb69edaa8
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-05-24 08:44:40 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-05-24 08:44:40 +0000

    sci-biology/raxml: drop 7.2.6
    
    Closes: https://bugs.gentoo.org/822408
    Closes: https://bugs.gentoo.org/831489
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/raxml/Manifest                         |  1 -
 sci-biology/raxml/files/raxml-7.2.6-makefile.patch | 29 -----------------
 sci-biology/raxml/raxml-7.2.6.ebuild               | 37 ----------------------
 3 files changed, 67 deletions(-)

Additionally, it has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=48c3969c6bbd4c14e06285180baf5ca376114835

commit 48c3969c6bbd4c14e06285180baf5ca376114835
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-05-24 08:44:39 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-05-24 08:44:39 +0000

    sci-biology/raxml: add 8.2.13
    
    Bug: https://bugs.gentoo.org/822408
    Bug: https://bugs.gentoo.org/831489
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/raxml/Manifest                         |  1 +
 .../raxml/files/raxml-8.2.13-makefile.patch        | 37 +++++++++++++++++++++
 sci-biology/raxml/metadata.xml                     | 11 ++++---
 sci-biology/raxml/raxml-8.2.13.ebuild              | 38 ++++++++++++++++++++++
 4 files changed, 83 insertions(+), 4 deletions(-)