13978 | PRINTID_REPORT, sizeof (id_txt) - 50); | ^~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lXp collect2: error: ld returned 1 exit status make: *** [makenet.unx:1421: Psequin] Error 1 FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 2 ####### ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_plasma_systemd-j3-20210622-144814 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-11.1.0 * clang version 12.0.0 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/12/bin /usr/lib/llvm/12 12.0.0 Python 3.9.5 Available Ruby profiles: [1] ruby26 (with Rubygems) [2] ruby30 (with Rubygems) * Available Rust versions: [1] rust-bin-1.53.0 * The following VMs are available for generation-2: *) AdoptOpenJDK 8.292_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.10.4 HEAD of ::gentoo commit 70f05d0c823e4cd9860ebe9ea3678031f0360b28 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Wed Jun 23 14:36:33 2021 +0000 2021-06-23 14:36:32 UTC emerge -qpvO sci-biology/ncbi-tools [ebuild N ] sci-biology/ncbi-tools-2.2.26-r3 USE="X -doc -static-libs"
Created attachment 718071 [details] emerge-info.txt
Created attachment 718074 [details] emerge-history.txt
Created attachment 718077 [details] environment
Created attachment 718080 [details] etc.portage.tar.bz2
Created attachment 718083 [details] logs.tar.bz2
Created attachment 718086 [details] sci-biology:ncbi-tools-2.2.26-r3:20210623-154104.log
Dupe of #649930
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1ea2b7dd4ff7d430b2f8789a28a34d7c3532a621 commit 1ea2b7dd4ff7d430b2f8789a28a34d7c3532a621 Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-08-01 12:01:12 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-08-01 12:01:12 +0000 profiles: last-rite sci-biology/ncbi-tools and rdeps Closes: https://github.com/gentoo/gentoo/pull/21853 Bug: https://bugs.gentoo.org/798015 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 10 ++++++++++ 1 file changed, 10 insertions(+)
*** This bug has been marked as a duplicate of bug 649930 ***
It is still developed, see https://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/2021/Aug_18_2021/README.html , albeit in c++. However, for those of use who have issues on some hosts to get that compiled, we were happy to use an older implementation in C. Why didn't you just just go the --without-x or --disable-x way? Why dropping the whole bundle? Please restore the package.
(In reply to Martin Mokrejš from comment #10) > It is still developed, see > https://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/2021/Aug_18_2021/ > README.html , albeit in c++. However, for those of use who have issues on > some hosts to get that compiled, we were happy to use an older > implementation in C. > > Why didn't you just just go the --without-x or --disable-x way? Why dropping > the whole bundle? > > Please restore the package. Please see https://bugs.gentoo.org/701340#c13
