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Bug 649930 - sci-biology/ncbi-tools-2.2.26-r2 : /.../ld: cannot find -lXp
Summary: sci-biology/ncbi-tools-2.2.26-r2 : /.../ld: cannot find -lXp
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-03-08 18:03 UTC by Toralf Förster
Modified: 2019-03-15 08:09 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.79 KB, text/plain)
2018-03-08 18:03 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,170.16 KB, text/plain)
2018-03-08 18:03 UTC, Toralf Förster
Details
environment (environment,88.80 KB, text/plain)
2018-03-08 18:03 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,12.23 KB, application/x-bzip)
2018-03-08 18:03 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,868 bytes, application/x-bzip)
2018-03-08 18:03 UTC, Toralf Förster
Details
sci-biology:ncbi-tools-2.2.26-r2:20180308-061447.log (sci-biology:ncbi-tools-2.2.26-r2:20180308-061447.log,219.92 KB, text/plain)
2018-03-08 18:03 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2018-03-08 18:03:01 UTC
                 PRINTID_REPORT, sizeof (id_txt) - 50);
                                 ^~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lXp
collect2: error: ld returned 1 exit status
make: *** [makenet.unx:1421: Psequin] Error 1
FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 2

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-desktop-gnome-systemd_20180304-095202

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.0 *

Available Python interpreters, in order of preference:
  [1]   python3.5
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby22 (with Rubygems)
  [2]   ruby23 (with Rubygems) *



emerge -qpv sci-biology/ncbi-tools
[ebuild  N    ] sci-biology/ncbi-tools-2.2.26-r2  USE="X -doc -static-libs" 

!!! The following installed packages are masked:
- media-video/qt-recordmydesktop-0.3.8-r3::gentoo (masked by: package.mask)
/usr/portage/profiles/package.mask:
# Michael Palimaka <kensington@gentoo.org> (07 Mar 2018)
# Depends on deprecated Qt 4. Dead upstream.
# Masked for removal in 30 days. Bug #649116.

For more information, see the MASKED PACKAGES section in the emerge
man page or refer to the Gentoo Handbook.
Comment 1 Toralf Förster gentoo-dev 2018-03-08 18:03:04 UTC
Created attachment 522958 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2018-03-08 18:03:07 UTC
Created attachment 522960 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2018-03-08 18:03:11 UTC
Created attachment 522962 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2018-03-08 18:03:14 UTC
Created attachment 522964 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2018-03-08 18:03:17 UTC
Created attachment 522966 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2018-03-08 18:03:20 UTC
Created attachment 522968 [details]
sci-biology:ncbi-tools-2.2.26-r2:20180308-061447.log
Comment 7 Juergen Rose 2018-11-16 08:49:38 UTC
I have the same issue. Is there not any patch.
Comment 8 Juergen Rose 2019-03-15 08:09:49 UTC
Almost one year after the first repport it still fails.