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Bug 780345 - sci-biology/biopython-1.77 fails tests
Summary: sci-biology/biopython-1.77 fails tests
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-04-05 09:44 UTC by Agostino Sarubbo
Modified: 2021-12-30 18:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,719.20 KB, text/plain)
2021-04-05 09:44 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2021-04-05 09:44:33 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/biopython-1.77 fails tests.
Discovered on: amd64 (internal ref: ci)
Comment 1 Agostino Sarubbo gentoo-dev 2021-04-05 09:44:36 UTC
Created attachment 697725 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2021-04-05 09:44:37 UTC
Possible context of error(s):

Check error: Parse a flawed PDB file in strict mode. ... ok
Comment 3 Andreas Sturmlechner gentoo-dev 2021-04-05 09:45:54 UTC
Unrelated to my change.
Comment 4 Larry the Git Cow gentoo-dev 2021-12-20 13:32:59 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=de858ae7cf457b2ef508edce83f809403346ac0f

commit de858ae7cf457b2ef508edce83f809403346ac0f
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-12-20 13:32:52 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-12-20 13:32:52 +0000

    sci-biology/biopython: add 1.79
    
    Bug: https://bugs.gentoo.org/757867
    Bug: https://bugs.gentoo.org/780345
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/biopython/Manifest              |  1 +
 sci-biology/biopython/biopython-1.79.ebuild | 62 +++++++++++++++++++++++++++++
 2 files changed, 63 insertions(+)
Comment 5 Larry the Git Cow gentoo-dev 2021-12-30 18:12:17 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ca7e670a753666e8f51fc8f34f038bf18e07a69

commit 3ca7e670a753666e8f51fc8f34f038bf18e07a69
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-12-30 18:12:11 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-12-30 18:12:11 +0000

    sci-biology/biopython: drop 1.77
    
    Closes: https://bugs.gentoo.org/757867
    Closes: https://bugs.gentoo.org/780345
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/biopython/Manifest              |  1 -
 sci-biology/biopython/biopython-1.77.ebuild | 61 -----------------------------
 2 files changed, 62 deletions(-)