https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/ Issue: sci-biology/picard-1.103 fails tests. Discovered on: amd64 (internal ref: tinderbox)
Created attachment 691482 [details] build.log.xz build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
Possible context of error(s): [exec] Execute failed: java.io.IOException: Cannot run program "svnversion" (in directory "/var/tmp/portage/sci-biology/picard-1.103/work/picard-1.103"): error=2, No such file or directory [exec] Execute failed: java.io.IOException: Cannot run program "svnversion" (in directory "/var/tmp/portage/sci-biology/picard-1.103/work/picard-1.103"): error=2, No such file or directory [testng] INFO 2021-03-15 00:55:45 CheckIlluminaDirectory Could not find a format with available files for the following data types: Position, RawIntensities [testng] Ignoring SAM validation error: ERROR: Tag value 4294967295 too large to store as signed integer.
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1aa6122f56334850d1168c1da91af91af58175b3 commit 1aa6122f56334850d1168c1da91af91af58175b3 Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-12-06 11:40:53 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-12-06 11:40:53 +0000 profiles: last-rite sci-biology/picard Bug: https://bugs.gentoo.org/572142 Bug: https://bugs.gentoo.org/580176 Bug: https://bugs.gentoo.org/776298 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 6 ++++++ 1 file changed, 6 insertions(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8c4dc835b136a9585d825da398339774c16b7c43 commit 8c4dc835b136a9585d825da398339774c16b7c43 Author: Jakov Smolić <jsmolic@gentoo.org> AuthorDate: 2022-01-08 10:28:27 +0000 Commit: Jakov Smolić <jsmolic@gentoo.org> CommitDate: 2022-01-08 10:32:29 +0000 sci-biology/picard: treeclean Closes: https://bugs.gentoo.org/776298 Closes: https://bugs.gentoo.org/580176 Closes: https://bugs.gentoo.org/572142 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> profiles/package.mask | 6 -- sci-biology/picard/Manifest | 1 - sci-biology/picard/files/1.103-gentoo.patch | 131 ---------------------------- sci-biology/picard/metadata.xml | 11 --- sci-biology/picard/picard-1.103.ebuild | 69 --------------- 5 files changed, 218 deletions(-)
